RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 MDN1Q9NU22 5596 aa4.09□□□□□ -1.75
UPF1-213ENST00000601981 TNP1P09430 55 aa4.09□□□□□ -1.75
UPF1-213ENST00000601981 LCE5AQ5TCM9 118 aa4.07□□□□□ -1.76
UPF1-213ENST00000601981 H3BS24 57 aa4.04□□□□□ -1.76
UPF1-213ENST00000601981 KMT2DO14686 5537 aa4.03□□□□□ -1.76
UPF1-213ENST00000601981 PP632Q6XCG6 107 aa4.02□□□□□ -1.77
UPF1-213ENST00000601981 KRTAP23-1A1A580 65 aa4.01□□□□□ -1.77
UPF1-213ENST00000601981 KRTAP5-9P26371 169 aa4.01□□□□□ -1.77
UPF1-213ENST00000601981 KRTAP10-7P60409 375 aaPredicted RBP3.99□□□□□ -1.77
UPF1-213ENST00000601981 KRTAP10-12P60413 245 aa3.99□□□□□ -1.77
UPF1-213ENST00000601981 KRTAP8-1Q8IUC2 63 aa3.97□□□□□ -1.77
UPF1-213ENST00000601981 KRTAP2-3P0C7H8 128 aa3.93□□□□□ -1.78
UPF1-213ENST00000601981 KRTAP2-4Q9BYR9 128 aa3.93□□□□□ -1.78
UPF1-213ENST00000601981 SPRR2FQ96RM1 72 aa3.9□□□□□ -1.79
UPF1-213ENST00000601981 LCE3AQ5TA76 89 aa3.89□□□□□ -1.79
UPF1-213ENST00000601981 SPRR2EP22531 72 aa3.81□□□□□ -1.8
UPF1-213ENST00000601981 SPRR2BP35325 72 aa3.81□□□□□ -1.8
UPF1-213ENST00000601981 SPRR2AP35326 72 aa3.81□□□□□ -1.8
UPF1-213ENST00000601981 GPR98Q8WXG9 6306 aa3.8□□□□□ -1.8
UPF1-213ENST00000601981 KRTAP2-2Q9BYT5 123 aa3.79□□□□□ -1.8
UPF1-213ENST00000601981 KRTAP2-1Q9BYU5 128 aa3.79□□□□□ -1.8
UPF1-213ENST00000601981 KRTAP5-3Q6L8H2 238 aa3.78□□□□□ -1.8
UPF1-213ENST00000601981 LCE1AQ5T7P2 110 aa3.75□□□□□ -1.81
UPF1-213ENST00000601981 KRTAP12-3P60328 96 aa3.74□□□□□ -1.81
UPF1-213ENST00000601981 KRTAP19-5Q3LI72 72 aa3.72□□□□□ -1.81
UPF1-213ENST00000601981 KRTAP19-7Q3SYF9 63 aa3.72□□□□□ -1.81
UPF1-213ENST00000601981 MT1EP04732 61 aa3.7□□□□□ -1.82
UPF1-213ENST00000601981 SPRR2DP22532 72 aa3.7□□□□□ -1.82
UPF1-213ENST00000601981 KRTAP15-1Q3LI76 137 aa3.68□□□□□ -1.82
UPF1-213ENST00000601981 KRTAP19-3Q7Z4W3 81 aa3.64□□□□□ -1.83
UPF1-213ENST00000601981 DSTQ03001 7570 aaKnown RBP3.63□□□□□ -1.83
UPF1-213ENST00000601981 MT1GP13640 62 aa3.59□□□□□ -1.83
UPF1-213ENST00000601981 SPRR5A0A1B0GTR4 108 aa3.58□□□□□ -1.84
UPF1-213ENST00000601981 MT1LQ93083 61 aa3.58□□□□□ -1.84
UPF1-213ENST00000601981 MT1MQ8N339 61 aa3.51□□□□□ -1.85
UPF1-213ENST00000601981 LCE3CQ5T5A8 94 aa3.5□□□□□ -1.85
UPF1-213ENST00000601981 LUZP6Q538Z0 58 aa3.45□□□□□ -1.86
UPF1-213ENST00000601981 NDUFAF8A1L188 74 aa3.38□□□□□ -1.87
UPF1-213ENST00000601981 HMCN1Q96RW7 5635 aa3.37□□□□□ -1.87
UPF1-213ENST00000601981 AHNAK2Q8IVF2 5795 aa3.37□□□□□ -1.87
UPF1-213ENST00000601981 KRTAP4-3Q9BYR4 195 aa3.37□□□□□ -1.87
UPF1-213ENST00000601981 KRTAP9-6A8MVA2 160 aa3.29□□□□□ -1.88
UPF1-213ENST00000601981 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
UPF1-213ENST00000601981 MT4P47944 62 aa3.24□□□□□ -1.89
UPF1-213ENST00000601981 KRTAP5-7Q6L8G8 165 aa3.2□□□□□ -1.9
UPF1-213ENST00000601981 KRTAP5-4Q6L8H1 288 aa3.19□□□□□ -1.9
UPF1-213ENST00000601981 KRTAP5-5Q701N2 237 aaPredicted RBP3.17□□□□□ -1.9
UPF1-213ENST00000601981 KRTAP12-4P60329 112 aa3.11□□□□□ -1.91
UPF1-213ENST00000601981 MT1AP04731 61 aa3.07□□□□□ -1.92
UPF1-213ENST00000601981 SYNE1Q8NF91 8797 aaKnown RBP3.03□□□□□ -1.92
UPF1-213ENST00000601981 A0A0A0MQY5 61 aa3.01□□□□□ -1.93
UPF1-213ENST00000601981 KRTAP20-2Q3LI61 65 aa3.01□□□□□ -1.93
UPF1-213ENST00000601981 KRTAP6-1Q3LI64 71 aa3□□□□□ -1.93
UPF1-213ENST00000601981 AHNAKQ09666 5890 aaKnown RBP2.89□□□□□ -1.95
UPF1-213ENST00000601981 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
UPF1-213ENST00000601981 MUC5BQ9HC84 5762 aaPredicted RBP2.84□□□□□ -1.95
UPF1-213ENST00000601981 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.84□□□□□ -1.95
UPF1-213ENST00000601981 KRTAP5-2Q701N4 177 aa2.84□□□□□ -1.95
UPF1-213ENST00000601981 INE1O15225 51 aa2.83□□□□□ -1.96
UPF1-213ENST00000601981 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
UPF1-213ENST00000601981 MT3P25713 68 aa2.82□□□□□ -1.96
UPF1-213ENST00000601981 KRTAP5-11Q6L8G4 156 aa2.79□□□□□ -1.96
UPF1-213ENST00000601981 OBSCNQ5VST9 7968 aa2.71□□□□□ -1.98
UPF1-213ENST00000601981 KRTAP5-8O75690 187 aa2.71□□□□□ -1.98
UPF1-213ENST00000601981 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
UPF1-213ENST00000601981 LCE3DQ9BYE3 92 aa2.63□□□□□ -1.99
UPF1-213ENST00000601981 LCE3EQ5T5B0 92 aa2.56□□□□□ -2
UPF1-213ENST00000601981 KRTAP5-1Q6L8H4 278 aa2.49□□□□□ -2.01
UPF1-213ENST00000601981 KRTAP4-4Q9BYR3 166 aa2.36□□□□□ -2.03
UPF1-213ENST00000601981 LCE1BQ5T7P3 118 aa2.35□□□□□ -2.03
UPF1-213ENST00000601981 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
UPF1-213ENST00000601981 PRM1P04553 51 aa2.25□□□□□ -2.05
UPF1-213ENST00000601981 LCE1FQ5T754 118 aa2.2□□□□□ -2.06
UPF1-213ENST00000601981 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
UPF1-213ENST00000601981 PHGR1C9JFL3 82 aa1.89□□□□□ -2.11
UPF1-213ENST00000601981 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
UPF1-213ENST00000601981 KRTAP21-1Q3LI58 79 aa1.46□□□□□ -2.18
UPF1-213ENST00000601981 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 89.2 ms