RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 PRCDQ00LT1 54 aa1.09□□□□□ -2.23
VPS4B-203ENST00000588323 WT1-ASQ06250 92 aa1.09□□□□□ -2.23
VPS4B-203ENST00000588323 KRTAP20-1Q3LI63 56 aa1.09□□□□□ -2.23
VPS4B-203ENST00000588323 MUC12Q9UKN1 5478 aa1.08□□□□□ -2.24
VPS4B-203ENST00000588323 POLR2KP53803 58 aaKnown RBP1.08□□□□□ -2.24
VPS4B-203ENST00000588323 RPL39P62891 51 aaKnown RBP1.08□□□□□ -2.24
VPS4B-203ENST00000588323 MT1HP80294 61 aa1.08□□□□□ -2.24
VPS4B-203ENST00000588323 SPINK9Q5DT21 86 aa1.08□□□□□ -2.24
VPS4B-203ENST00000588323 DEFB105AQ8NG35 78 aa1.08□□□□□ -2.24
VPS4B-203ENST00000588323 PRO0255Q9UI72 69 aa1.08□□□□□ -2.24
VPS4B-203ENST00000588323 DEFB1P60022 68 aa1.07□□□□□ -2.24
VPS4B-203ENST00000588323 RPL39LQ96EH5 51 aaKnown RBP1.07□□□□□ -2.24
VPS4B-203ENST00000588323 HTN1P15515 57 aa1.06□□□□□ -2.24
VPS4B-203ENST00000588323 KRTAP19-2Q3LHN2 52 aa1.06□□□□□ -2.24
VPS4B-203ENST00000588323 FLGP20930 4061 aaPredicted RBP1.05□□□□□ -2.24
VPS4B-203ENST00000588323 KMT2DO14686 5537 aa1.05□□□□□ -2.24
VPS4B-203ENST00000588323 COX6A2Q02221 97 aa1.05□□□□□ -2.24
VPS4B-203ENST00000588323 MDN1Q9NU22 5596 aa1.05□□□□□ -2.24
VPS4B-203ENST00000588323 PRLHP81277 87 aa1.04□□□□□ -2.24
VPS4B-203ENST00000588323 H1FX-AS1Q4G0G2 97 aa1.04□□□□□ -2.24
VPS4B-203ENST00000588323 TOMM7Q9P0U1 55 aa1.04□□□□□ -2.24
VPS4B-203ENST00000588323 GPR98Q8WXG9 6306 aa1.03□□□□□ -2.24
VPS4B-203ENST00000588323 IGLV5-48A0A075B6I7 105 aa1.03□□□□□ -2.24
VPS4B-203ENST00000588323 H0YAA0 97 aa1.03□□□□□ -2.24
VPS4B-203ENST00000588323 KRTAP2-3P0C7H8 128 aa1.02□□□□□ -2.25
VPS4B-203ENST00000588323 KRTAP2-4Q9BYR9 128 aa1.02□□□□□ -2.25
VPS4B-203ENST00000588323 C10orf95Q9H7T3 257 aa1.02□□□□□ -2.25
VPS4B-203ENST00000588323 M0QY20 66 aa1.01□□□□□ -2.25
VPS4B-203ENST00000588323 M0R2T5 61 aa1.01□□□□□ -2.25
VPS4B-203ENST00000588323 KRTAP19-6Q3LI70 58 aa1.01□□□□□ -2.25
VPS4B-203ENST00000588323 SPRR1AP35321 89 aa1□□□□□ -2.25
VPS4B-203ENST00000588323 A0A096LNI7 61 aa0.99□□□□□ -2.25
VPS4B-203ENST00000588323 SPINK1P00995 79 aa0.98□□□□□ -2.25
VPS4B-203ENST00000588323 SPRR1BP22528 89 aa0.98□□□□□ -2.25
VPS4B-203ENST00000588323 KRTAP2-1Q9BYU5 128 aa0.98□□□□□ -2.25
VPS4B-203ENST00000588323 MMP24-AS1A0A0U1RRL7 71 aa0.97□□□□□ -2.25
VPS4B-203ENST00000588323 MT2AP02795 61 aa0.95□□□□□ -2.26
VPS4B-203ENST00000588323 S4R3F8 94 aa0.95□□□□□ -2.26
VPS4B-203ENST00000588323 A0A0D9SG42 100 aa0.94□□□□□ -2.26
VPS4B-203ENST00000588323 MT1FP04733 61 aa0.94□□□□□ -2.26
VPS4B-203ENST00000588323 CLPSL2Q6UWE3 100 aa0.94□□□□□ -2.26
VPS4B-203ENST00000588323 RPS29P62273 56 aaKnown RBP0.92□□□□□ -2.26
VPS4B-203ENST00000588323 KRTAP5-10Q6L8G5 202 aa0.9□□□□□ -2.27
VPS4B-203ENST00000588323 AHNAK2Q8IVF2 5795 aa0.9□□□□□ -2.27
VPS4B-203ENST00000588323 SPRR2EP22531 72 aa0.89□□□□□ -2.27
VPS4B-203ENST00000588323 SPRR2BP35325 72 aa0.89□□□□□ -2.27
VPS4B-203ENST00000588323 SPRR2AP35326 72 aa0.89□□□□□ -2.27
VPS4B-203ENST00000588323 DSTQ03001 7570 aaKnown RBP0.87□□□□□ -2.27
VPS4B-203ENST00000588323 SPRR2DP22532 72 aa0.87□□□□□ -2.27
VPS4B-203ENST00000588323 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
VPS4B-203ENST00000588323 M0QZ58 72 aa0.86□□□□□ -2.27
VPS4B-203ENST00000588323 SPRR2FQ96RM1 72 aa0.86□□□□□ -2.27
VPS4B-203ENST00000588323 C9orf92A6NGG3 77 aa0.85□□□□□ -2.27
VPS4B-203ENST00000588323 MT1BP07438 61 aa0.81□□□□□ -2.28
VPS4B-203ENST00000588323 AHNAKQ09666 5890 aaKnown RBP0.81□□□□□ -2.28
VPS4B-203ENST00000588323 MUC5BQ9HC84 5762 aaPredicted RBP0.8□□□□□ -2.28
VPS4B-203ENST00000588323 KRTAP19-8Q3LI54 63 aa0.8□□□□□ -2.28
VPS4B-203ENST00000588323 KRTAP8-1Q8IUC2 63 aa0.79□□□□□ -2.28
VPS4B-203ENST00000588323 TNP1P09430 55 aa0.78□□□□□ -2.28
VPS4B-203ENST00000588323 SPRR2GQ9BYE4 73 aa0.77□□□□□ -2.29
VPS4B-203ENST00000588323 MT4P47944 62 aa0.76□□□□□ -2.29
VPS4B-203ENST00000588323 MUC5ACP98088 5654 aa0.75□□□□□ -2.29
VPS4B-203ENST00000588323 MT1XP80297 61 aa0.72□□□□□ -2.29
VPS4B-203ENST00000588323 KRTAP20-2Q3LI61 65 aa0.69□□□□□ -2.3
VPS4B-203ENST00000588323 KRTAP19-3Q7Z4W3 81 aa0.69□□□□□ -2.3
VPS4B-203ENST00000588323 MT1GP13640 62 aa0.66□□□□□ -2.3
VPS4B-203ENST00000588323 MT1EP04732 61 aa0.65□□□□□ -2.31
VPS4B-203ENST00000588323 KRTAP19-7Q3SYF9 63 aa0.65□□□□□ -2.31
VPS4B-203ENST00000588323 MT1MQ8N339 61 aa0.63□□□□□ -2.31
VPS4B-203ENST00000588323 SYNE1Q8NF91 8797 aaKnown RBP0.62□□□□□ -2.31
VPS4B-203ENST00000588323 PRM1P04553 51 aa0.61□□□□□ -2.31
VPS4B-203ENST00000588323 MT1LQ93083 61 aa0.59□□□□□ -2.31
VPS4B-203ENST00000588323 KRTAP19-5Q3LI72 72 aa0.56□□□□□ -2.32
VPS4B-203ENST00000588323 KRTAP6-2Q3LI66 62 aa0.51□□□□□ -2.33
VPS4B-203ENST00000588323 PHGR1C9JFL3 82 aa0.5□□□□□ -2.33
VPS4B-203ENST00000588323 MT1AP04731 61 aa0.5□□□□□ -2.33
VPS4B-203ENST00000588323 KRTAP6-1Q3LI64 71 aa0.5□□□□□ -2.33
VPS4B-203ENST00000588323 KRTAP21-1Q3LI58 79 aa0.42□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 80.2 ms