RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ABCA8O94911 1581 aa-2.91□□□□□ -2.87
SS18-214ENST00000580003 AGLP35573 1532 aa-2.91□□□□□ -2.88
SS18-214ENST00000580003 CFAP74Q9C0B2 1584 aa-2.91□□□□□ -2.88
SS18-214ENST00000580003 TCEAL7Q9BRU2 100 aa-2.92□□□□□ -2.88
SS18-214ENST00000580003 TDRG1Q3Y452 100 aa-2.93□□□□□ -2.88
SS18-214ENST00000580003 DUOX1Q9NRD9 1551 aa-2.94□□□□□ -2.88
SS18-214ENST00000580003 ABCA6Q8N139 1617 aa-2.97□□□□□ -2.89
SS18-214ENST00000580003 H0YGX0 51 aa-2.98□□□□□ -2.89
SS18-214ENST00000580003 H3BVH4 76 aa-2.98□□□□□ -2.89
SS18-214ENST00000580003 APELAP0DMC3 54 aa-2.98□□□□□ -2.89
SS18-214ENST00000580003 C14orf144Q96I85 54 aa-2.98□□□□□ -2.89
SS18-214ENST00000580003 UGGT1Q9NYU2 1555 aa-2.99□□□□□ -2.89
SS18-214ENST00000580003 ATXN8Q156A1 80 aa-2.99□□□□□ -2.89
SS18-214ENST00000580003 CNTLNQ9NXG0 1405 aa-3□□□□□ -2.89
SS18-214ENST00000580003 A0A096LPF7 62 aa-3□□□□□ -2.89
SS18-214ENST00000580003 NDUFA1O15239 70 aa-3□□□□□ -2.89
SS18-214ENST00000580003 TOP2AP11388 1531 aaKnown RBP-3□□□□□ -2.89
SS18-214ENST00000580003 NCMAPQ5T1S8 102 aa-3.01□□□□□ -2.89
SS18-214ENST00000580003 IQGAP1P46940 1657 aa-3.01□□□□□ -2.89
SS18-214ENST00000580003 LINC01549A6NIU2 74 aa-3.02□□□□□ -2.89
SS18-214ENST00000580003 S100A16Q96FQ6 103 aaKnown RBP-3.02□□□□□ -2.89
SS18-214ENST00000580003 ABCA5Q8WWZ7 1642 aa-3.03□□□□□ -2.89
SS18-214ENST00000580003 PYY3Q5JQD4 70 aa-3.03□□□□□ -2.89
SS18-214ENST00000580003 S100ZQ8WXG8 99 aa-3.03□□□□□ -2.89
SS18-214ENST00000580003 ST20Q9HBF5 79 aa-3.03□□□□□ -2.89
SS18-214ENST00000580003 KANTRA0A1W2PQU2 76 aa-3.04□□□□□ -2.9
SS18-214ENST00000580003 IQGAP3Q86VI3 1631 aa-3.04□□□□□ -2.9
SS18-214ENST00000580003 ABCA9Q8IUA7 1624 aa-3.04□□□□□ -2.9
SS18-214ENST00000580003 SERF2P84101 59 aa-3.05□□□□□ -2.9
SS18-214ENST00000580003 H3BUX3 64 aa-3.06□□□□□ -2.9
SS18-214ENST00000580003 HILPDAQ9Y5L2 63 aa-3.06□□□□□ -2.9
SS18-214ENST00000580003 ABCC8Q09428 1581 aa-3.07□□□□□ -2.9
SS18-214ENST00000580003 CCDC18Q5T9S5 1454 aa-3.07□□□□□ -2.9
SS18-214ENST00000580003 PDCD5O14737 125 aa-3.07□□□□□ -2.9
SS18-214ENST00000580003 HTN3P15516 51 aa-3.07□□□□□ -2.9
SS18-214ENST00000580003 ATP7AQ04656 1500 aa-3.09□□□□□ -2.9
SS18-214ENST00000580003 PLNP26678 52 aa-3.11□□□□□ -2.91
SS18-214ENST00000580003 C18orf32Q8TCD1 76 aa-3.11□□□□□ -2.91
SS18-214ENST00000580003 ERICH3Q5RHP9 1530 aa-3.11□□□□□ -2.91
SS18-214ENST00000580003 ATP6V1G2-DDX39BF2Z307 99 aa-3.12□□□□□ -2.91
SS18-214ENST00000580003 RPL39P62891 51 aaKnown RBP-3.12□□□□□ -2.91
SS18-214ENST00000580003 A0A087WWC5 75 aa-3.14□□□□□ -2.91
SS18-214ENST00000580003 M0R143 59 aa-3.14□□□□□ -2.91
SS18-214ENST00000580003 GNG13Q9P2W3 67 aa-3.15□□□□□ -2.91
SS18-214ENST00000580003 SAMD9LQ8IVG5 1584 aa-3.16□□□□□ -2.91
SS18-214ENST00000580003 CPS1P31327 1500 aa-3.17□□□□□ -2.92
SS18-214ENST00000580003 UGGT2Q9NYU1 1516 aa-3.17□□□□□ -2.92
SS18-214ENST00000580003 H3BSH0 61 aa-3.18□□□□□ -2.92
SS18-214ENST00000580003 PKIAP61925 76 aa-3.18□□□□□ -2.92
SS18-214ENST00000580003 RPL39LQ96EH5 51 aaKnown RBP-3.18□□□□□ -2.92
SS18-214ENST00000580003 ABCA10Q8WWZ4 1543 aa-3.19□□□□□ -2.92
SS18-214ENST00000580003 ADIRFQ15847 76 aa-3.19□□□□□ -2.92
SS18-214ENST00000580003 MROH2BQ7Z745 1585 aa-3.23□□□□□ -2.93
SS18-214ENST00000580003 Q9H521 79 aa-3.24□□□□□ -2.93
SS18-214ENST00000580003 FANCD2Q9BXW9 1451 aa-3.26□□□□□ -2.93
SS18-214ENST00000580003 K7EIM0 57 aa-3.29□□□□□ -2.94
SS18-214ENST00000580003 PRCDQ00LT1 54 aa-3.31□□□□□ -2.94
SS18-214ENST00000580003 S100A13Q99584 98 aa-3.31□□□□□ -2.94
SS18-214ENST00000580003 V9GYS6 101 aa-3.32□□□□□ -2.94
SS18-214ENST00000580003 EFCAB5A4FU69 1503 aa-3.33□□□□□ -2.94
SS18-214ENST00000580003 TMEM167AQ8TBQ9 72 aa-3.33□□□□□ -2.94
SS18-214ENST00000580003 SMCO4Q9NRQ5 59 aa-3.35□□□□□ -2.95
SS18-214ENST00000580003 CMC2Q9NRP2 79 aa-3.37□□□□□ -2.95
SS18-214ENST00000580003 IQGAP2Q13576 1575 aa-3.38□□□□□ -2.95
SS18-214ENST00000580003 Q9Y3F1 56 aa-3.38□□□□□ -2.95
SS18-214ENST00000580003 DEFB108BQ8NET1 73 aa-3.42□□□□□ -2.96
SS18-214ENST00000580003 ARHGAP5-AS1Q96IT6 56 aa-3.42□□□□□ -2.96
SS18-214ENST00000580003 COX14Q96I36 57 aa-3.43□□□□□ -2.96
SS18-214ENST00000580003 SNRPGP15A8MWD9 76 aa-3.49□□□□□ -2.97
SS18-214ENST00000580003 STATHP02808 62 aa-3.49□□□□□ -2.97
SS18-214ENST00000580003 DEFB108AA8MXU0 73 aa-3.56□□□□□ -2.98
SS18-214ENST00000580003 RPL39P5Q59GN2 51 aa-3.57□□□□□ -2.98
SS18-214ENST00000580003 SMIM5Q71RC9 77 aa-3.59□□□□□ -2.98
SS18-214ENST00000580003 GCC2Q8IWJ2 1684 aa-3.67□□□□□ -3
SS18-214ENST00000580003 SNRPGP62308 76 aaKnown RBP-3.68□□□□□ -3
SS18-214ENST00000580003 GNG2P59768 71 aa-3.7□□□□□ -3
SS18-214ENST00000580003 TOMM5Q8N4H5 51 aa-3.87□□□□□ -3.03
SS18-214ENST00000580003 SMIM31A0A1B0GVY4 71 aa-3.94□□□□□ -3.04
Retrieved 78 of 20,778 RNA–protein pairs in 97.5 ms