RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-209ENST00000564255 DEFB136Q30KP8 78 aa0.54□□□□□ -2.32
CHD9-209ENST00000564255 DEFB135Q30KP9 77 aa0.54□□□□□ -2.32
CHD9-209ENST00000564255 KRTAP21-1Q3LI58 79 aa0.54□□□□□ -2.32
CHD9-209ENST00000564255 H3BNG1 76 aa0.53□□□□□ -2.32
CHD9-209ENST00000564255 PKD1P98161 4303 aa0.53□□□□□ -2.32
CHD9-209ENST00000564255 DNAH8Q96JB1 4490 aa0.53□□□□□ -2.32
CHD9-209ENST00000564255 LRP1Q07954 4544 aaKnown RBP0.52□□□□□ -2.33
CHD9-209ENST00000564255 MMP24-AS1A0A0U1RRL7 71 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 POLR2KP53803 58 aaKnown RBP0.52□□□□□ -2.33
CHD9-209ENST00000564255 KRTAP19-6Q3LI70 58 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 SPINK6Q6UWN8 80 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 S4R3F8 94 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 USH2AO75445 5202 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 DEFB131AP59861 70 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 RPL39P62891 51 aaKnown RBP0.52□□□□□ -2.33
CHD9-209ENST00000564255 KRTAP19-3Q7Z4W3 81 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 MUC17Q685J3 4493 aa0.52□□□□□ -2.33
CHD9-209ENST00000564255 ARHGAP5-AS1Q96IT6 56 aa0.51□□□□□ -2.33
CHD9-209ENST00000564255 MT1HP80294 61 aa0.5□□□□□ -2.33
CHD9-209ENST00000564255 PRLHP81277 87 aa0.5□□□□□ -2.33
CHD9-209ENST00000564255 RPL39LQ96EH5 51 aaKnown RBP0.5□□□□□ -2.33
CHD9-209ENST00000564255 M0R2T5 61 aa0.49□□□□□ -2.33
CHD9-209ENST00000564255 DEFB4AO15263 64 aa0.48□□□□□ -2.33
CHD9-209ENST00000564255 HTN3P15516 51 aa0.48□□□□□ -2.33
CHD9-209ENST00000564255 LINC01556Q5JQF7 62 aa0.47□□□□□ -2.33
CHD9-209ENST00000564255 NOP10Q9NPE3 64 aaKnown RBP0.47□□□□□ -2.33
CHD9-209ENST00000564255 LINC01590Q5TEZ4 76 aa0.47□□□□□ -2.33
CHD9-209ENST00000564255 CLPSL2Q6UWE3 100 aa0.47□□□□□ -2.33
CHD9-209ENST00000564255 TTTY10Q9BZA0 68 aa0.47□□□□□ -2.33
CHD9-209ENST00000564255 KRTAP19-2Q3LHN2 52 aa0.47□□□□□ -2.33
CHD9-209ENST00000564255 SPRR2EP22531 72 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 SPRR2BP35325 72 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 SPRR2AP35326 72 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 A0A096LPF7 62 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 A8MTW9 85 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 SPRR2DP22532 72 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 LEAP2Q969E1 77 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 RHPN1-AS1Q9BWJ2 59 aa0.46□□□□□ -2.34
CHD9-209ENST00000564255 M0QY20 66 aa0.45□□□□□ -2.34
CHD9-209ENST00000564255 TMEM167AQ8TBQ9 72 aa0.45□□□□□ -2.34
CHD9-209ENST00000564255 PRCDQ00LT1 54 aa0.44□□□□□ -2.34
CHD9-209ENST00000564255 SPINK1P00995 79 aa0.44□□□□□ -2.34
CHD9-209ENST00000564255 PHGR1C9JFL3 82 aa0.43□□□□□ -2.34
CHD9-209ENST00000564255 MT2AP02795 61 aa0.43□□□□□ -2.34
CHD9-209ENST00000564255 RPS29P62273 56 aaKnown RBP0.43□□□□□ -2.34
CHD9-209ENST00000564255 TOMM7Q9P0U1 55 aa0.43□□□□□ -2.34
CHD9-209ENST00000564255 LPAP08519 4548 aa0.42□□□□□ -2.34
CHD9-209ENST00000564255 SPRR2FQ96RM1 72 aa0.42□□□□□ -2.34
CHD9-209ENST00000564255 MUC12Q9UKN1 5478 aa0.41□□□□□ -2.34
CHD9-209ENST00000564255 M0QZ58 72 aa0.41□□□□□ -2.34
CHD9-209ENST00000564255 MT1FP04733 61 aa0.41□□□□□ -2.34
CHD9-209ENST00000564255 K7EIM0 57 aa0.4□□□□□ -2.34
CHD9-209ENST00000564255 APELAP0DMC3 54 aa0.4□□□□□ -2.34
CHD9-209ENST00000564255 RPL39P5Q59GN2 51 aa0.39□□□□□ -2.35
CHD9-209ENST00000564255 KRTAP8-1Q8IUC2 63 aa0.39□□□□□ -2.35
CHD9-209ENST00000564255 A0A096LNI7 61 aa0.38□□□□□ -2.35
CHD9-209ENST00000564255 PRM1P04553 51 aa0.38□□□□□ -2.35
CHD9-209ENST00000564255 C9orf92A6NGG3 77 aa0.38□□□□□ -2.35
CHD9-209ENST00000564255 HTN1P15515 57 aa0.37□□□□□ -2.35
CHD9-209ENST00000564255 TNP1P09430 55 aa0.37□□□□□ -2.35
CHD9-209ENST00000564255 MT4P47944 62 aa0.37□□□□□ -2.35
CHD9-209ENST00000564255 KRTAP19-8Q3LI54 63 aa0.37□□□□□ -2.35
CHD9-209ENST00000564255 FLGP20930 4061 aaPredicted RBP0.37□□□□□ -2.35
CHD9-209ENST00000564255 MT1BP07438 61 aa0.35□□□□□ -2.35
CHD9-209ENST00000564255 DEFB1P60022 68 aa0.35□□□□□ -2.35
CHD9-209ENST00000564255 KRTAP20-2Q3LI61 65 aa0.35□□□□□ -2.35
CHD9-209ENST00000564255 SPRR2GQ9BYE4 73 aa0.34□□□□□ -2.36
CHD9-209ENST00000564255 MT1GP13640 62 aa0.31□□□□□ -2.36
CHD9-209ENST00000564255 MT1AP04731 61 aa0.28□□□□□ -2.36
CHD9-209ENST00000564255 MT1XP80297 61 aa0.28□□□□□ -2.36
CHD9-209ENST00000564255 SYNE1Q8NF91 8797 aaKnown RBP0.28□□□□□ -2.36
CHD9-209ENST00000564255 MT1EP04732 61 aa0.27□□□□□ -2.37
CHD9-209ENST00000564255 MT1MQ8N339 61 aa0.27□□□□□ -2.37
CHD9-209ENST00000564255 KRTAP6-2Q3LI66 62 aa0.27□□□□□ -2.37
CHD9-209ENST00000564255 KRTAP19-5Q3LI72 72 aa0.26□□□□□ -2.37
CHD9-209ENST00000564255 KRTAP19-7Q3SYF9 63 aa0.26□□□□□ -2.37
CHD9-209ENST00000564255 MT1LQ93083 61 aa0.24□□□□□ -2.37
CHD9-209ENST00000564255 KRTAP6-1Q3LI64 71 aa0.18□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 109.2 ms