RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 LINC00308Q8TCZ7 52 aa-0.1□□□□□ -2.43
USP3-209ENST00000558925 NMES1Q9C002 83 aa-0.1□□□□□ -2.43
USP3-209ENST00000558925 ABCA5Q8WWZ7 1642 aa-0.1□□□□□ -2.43
USP3-209ENST00000558925 DDX60Q8IY21 1712 aaKnown RBP-0.1□□□□□ -2.43
USP3-209ENST00000558925 H3BUA1 57 aa-0.11□□□□□ -2.43
USP3-209ENST00000558925 TFF3Q07654 80 aa-0.11□□□□□ -2.43
USP3-209ENST00000558925 MT1MQ8N339 61 aa-0.11□□□□□ -2.43
USP3-209ENST00000558925 KAAG1Q9UBP8 84 aa-0.11□□□□□ -2.43
USP3-209ENST00000558925 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.11□□□□□ -2.43
USP3-209ENST00000558925 FAM208AQ9UK61 1670 aaKnown RBP-0.11□□□□□ -2.43
USP3-209ENST00000558925 ATP7AQ04656 1500 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 MMP24-AS1A0A0U1RRL7 71 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 SMIM27A0A1W2PRY6 76 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 TNP1P09430 55 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 MT1GP13640 62 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 SERF2P84101 59 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 WFDC10BQ8IUB3 73 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 TMEM167BQ9NRX6 74 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 DUOX1Q9NRD9 1551 aa-0.12□□□□□ -2.43
USP3-209ENST00000558925 FANCD2Q9BXW9 1451 aa-0.13□□□□□ -2.43
USP3-209ENST00000558925 H0YGX0 51 aa-0.13□□□□□ -2.43
USP3-209ENST00000558925 STATHP02808 62 aa-0.13□□□□□ -2.43
USP3-209ENST00000558925 MT1EP04732 61 aa-0.13□□□□□ -2.43
USP3-209ENST00000558925 PLNP26678 52 aa-0.13□□□□□ -2.43
USP3-209ENST00000558925 NOP10Q9NPE3 64 aaKnown RBP-0.13□□□□□ -2.43
USP3-209ENST00000558925 SYCP2Q9BX26 1530 aa-0.13□□□□□ -2.43
USP3-209ENST00000558925 LINC01546A6NGU7 62 aa-0.14□□□□□ -2.43
USP3-209ENST00000558925 M0QY20 66 aa-0.14□□□□□ -2.43
USP3-209ENST00000558925 ABRACLQ9P1F3 81 aa-0.14□□□□□ -2.43
USP3-209ENST00000558925 ABCC8Q09428 1581 aa-0.15□□□□□ -2.43
USP3-209ENST00000558925 M0QZ58 72 aa-0.15□□□□□ -2.43
USP3-209ENST00000558925 DEFB1P60022 68 aa-0.15□□□□□ -2.43
USP3-209ENST00000558925 CLPSL2Q6UWE3 100 aa-0.15□□□□□ -2.43
USP3-209ENST00000558925 SMIM2Q9BVW6 85 aa-0.15□□□□□ -2.43
USP3-209ENST00000558925 CMC2Q9NRP2 79 aa-0.15□□□□□ -2.43
USP3-209ENST00000558925 TRPM2O94759 1503 aa-0.15□□□□□ -2.43
USP3-209ENST00000558925 TOP2AP11388 1531 aaKnown RBP-0.15□□□□□ -2.43
USP3-209ENST00000558925 A8MTW9 85 aa-0.16□□□□□ -2.44
USP3-209ENST00000558925 POLR2KP53803 58 aaKnown RBP-0.16□□□□□ -2.44
USP3-209ENST00000558925 RPS29P62273 56 aaKnown RBP-0.16□□□□□ -2.44
USP3-209ENST00000558925 MT1LQ93083 61 aa-0.16□□□□□ -2.44
USP3-209ENST00000558925 TTTY10Q9BZA0 68 aa-0.16□□□□□ -2.44
USP3-209ENST00000558925 SNRPGP15A8MWD9 76 aa-0.17□□□□□ -2.44
USP3-209ENST00000558925 SPART-AS1P0CW21 52 aa-0.17□□□□□ -2.44
USP3-209ENST00000558925 DEFB131AP59861 70 aa-0.17□□□□□ -2.44
USP3-209ENST00000558925 MT1XP80297 61 aa-0.17□□□□□ -2.44
USP3-209ENST00000558925 NDUFA1O15239 70 aa-0.18□□□□□ -2.44
USP3-209ENST00000558925 DEFB4AO15263 64 aa-0.18□□□□□ -2.44
USP3-209ENST00000558925 IQGAP2Q13576 1575 aa-0.19□□□□□ -2.44
USP3-209ENST00000558925 H3BSH0 61 aa-0.19□□□□□ -2.44
USP3-209ENST00000558925 TOMM5Q8N4H5 51 aa-0.2□□□□□ -2.44
USP3-209ENST00000558925 LEAP2Q969E1 77 aa-0.2□□□□□ -2.44
USP3-209ENST00000558925 DEFB108AA8MXU0 73 aa-0.21□□□□□ -2.44
USP3-209ENST00000558925 RPL39P62891 51 aaKnown RBP-0.22□□□□□ -2.44
USP3-209ENST00000558925 DEFB133Q30KQ1 61 aa-0.23□□□□□ -2.45
USP3-209ENST00000558925 TOMM7Q9P0U1 55 aa-0.23□□□□□ -2.45
USP3-209ENST00000558925 HTN3P15516 51 aa-0.24□□□□□ -2.45
USP3-209ENST00000558925 DEFB136Q30KP8 78 aa-0.24□□□□□ -2.45
USP3-209ENST00000558925 RPL39LQ96EH5 51 aaKnown RBP-0.24□□□□□ -2.45
USP3-209ENST00000558925 DEFB108BQ8NET1 73 aa-0.25□□□□□ -2.45
USP3-209ENST00000558925 CD52P31358 61 aa-0.26□□□□□ -2.45
USP3-209ENST00000558925 H3BUX3 64 aa-0.27□□□□□ -2.45
USP3-209ENST00000558925 LINC01556Q5JQF7 62 aa-0.27□□□□□ -2.45
USP3-209ENST00000558925 LINC01590Q5TEZ4 76 aa-0.27□□□□□ -2.45
USP3-209ENST00000558925 A0A096LNI7 61 aa-0.28□□□□□ -2.45
USP3-209ENST00000558925 APELAP0DMC3 54 aa-0.28□□□□□ -2.45
USP3-209ENST00000558925 Q9Y3F1 56 aa-0.28□□□□□ -2.45
USP3-209ENST00000558925 A0A096LPF7 62 aa-0.3□□□□□ -2.46
USP3-209ENST00000558925 HTN1P15515 57 aa-0.3□□□□□ -2.46
USP3-209ENST00000558925 SNRPGP62308 76 aaKnown RBP-0.3□□□□□ -2.46
USP3-209ENST00000558925 RHPN1-AS1Q9BWJ2 59 aa-0.3□□□□□ -2.46
USP3-209ENST00000558925 COX14Q96I36 57 aa-0.31□□□□□ -2.46
USP3-209ENST00000558925 GCC2Q8IWJ2 1684 aa-0.32□□□□□ -2.46
USP3-209ENST00000558925 ARHGAP5-AS1Q96IT6 56 aa-0.33□□□□□ -2.46
USP3-209ENST00000558925 K7EIM0 57 aa-0.34□□□□□ -2.46
USP3-209ENST00000558925 PRCDQ00LT1 54 aa-0.36□□□□□ -2.47
USP3-209ENST00000558925 TMEM167AQ8TBQ9 72 aa-0.39□□□□□ -2.47
USP3-209ENST00000558925 RPL39P5Q59GN2 51 aa-0.4□□□□□ -2.47
Retrieved 78 of 20,778 RNA–protein pairs in 9.1 ms