RNA–Protein interactions for RNA: ENST00000557538.5

HIF1A-212, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-212ENST00000557538 DEFB136Q30KP8 78 aa0.48□□□□□ -2.33
HIF1A-212ENST00000557538 LRP2P98164 4655 aa0.48□□□□□ -2.33
HIF1A-212ENST00000557538 DEFB124Q8NES8 71 aa0.47□□□□□ -2.33
HIF1A-212ENST00000557538 SMR3AQ99954 134 aa0.47□□□□□ -2.33
HIF1A-212ENST00000557538 NOP10Q9NPE3 64 aaKnown RBP0.47□□□□□ -2.33
HIF1A-212ENST00000557538 CNTRLQ7Z7A1 2325 aa0.47□□□□□ -2.33
HIF1A-212ENST00000557538 WNK2Q9Y3S1 2297 aa0.47□□□□□ -2.33
HIF1A-212ENST00000557538 HRNRQ86YZ3 2850 aaPredicted RBP0.47□□□□□ -2.33
HIF1A-212ENST00000557538 DEFB108BQ8NET1 73 aa0.46□□□□□ -2.34
HIF1A-212ENST00000557538 Q9Y3F1 56 aa0.46□□□□□ -2.34
HIF1A-212ENST00000557538 HMCN2Q8NDA2 5059 aa0.46□□□□□ -2.34
HIF1A-212ENST00000557538 KRTAP4-1Q9BYQ7 146 aa0.45□□□□□ -2.34
HIF1A-212ENST00000557538 APC2O95996 2303 aa0.45□□□□□ -2.34
HIF1A-212ENST00000557538 CD52P31358 61 aa0.45□□□□□ -2.34
HIF1A-212ENST00000557538 CSPG4Q6UVK1 2322 aa0.45□□□□□ -2.34
HIF1A-212ENST00000557538 AKAP6Q13023 2319 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 A0A096LPF7 62 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 KRTAP8-1Q8IUC2 63 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 U3KQA8 63 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 KNL1Q8NG31 2342 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 ITPR2Q14571 2701 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 H3BNG1 76 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 HTN1P15515 57 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 PKDREJQ9NTG1 2253 aa0.44□□□□□ -2.34
HIF1A-212ENST00000557538 F8P00451 2351 aa0.43□□□□□ -2.34
HIF1A-212ENST00000557538 TGP01266 2768 aa0.43□□□□□ -2.34
HIF1A-212ENST00000557538 CFAP46Q8IYW2 2715 aa0.43□□□□□ -2.34
HIF1A-212ENST00000557538 LINC01556Q5JQF7 62 aa0.43□□□□□ -2.34
HIF1A-212ENST00000557538 A0A096LNI7 61 aa0.43□□□□□ -2.34
HIF1A-212ENST00000557538 KRTAP19-5Q3LI72 72 aa0.43□□□□□ -2.34
HIF1A-212ENST00000557538 ROS1P08922 2347 aa0.42□□□□□ -2.34
HIF1A-212ENST00000557538 CENPEQ02224 2701 aa0.42□□□□□ -2.34
HIF1A-212ENST00000557538 ACACAQ13085 2346 aa0.42□□□□□ -2.34
HIF1A-212ENST00000557538 SMR3BP02814 79 aaPredicted RBP0.41□□□□□ -2.34
HIF1A-212ENST00000557538 RPS29P62273 56 aaKnown RBP0.41□□□□□ -2.34
HIF1A-212ENST00000557538 C9orf92A6NGG3 77 aa0.39□□□□□ -2.35
HIF1A-212ENST00000557538 PRM1P04553 51 aa0.39□□□□□ -2.35
HIF1A-212ENST00000557538 TNP1P09430 55 aa0.39□□□□□ -2.35
HIF1A-212ENST00000557538 RNF213Q63HN8 5207 aa0.38□□□□□ -2.35
HIF1A-212ENST00000557538 SPINK6Q6UWN8 80 aa0.38□□□□□ -2.35
HIF1A-212ENST00000557538 PHGR1C9JFL3 82 aa0.38□□□□□ -2.35
HIF1A-212ENST00000557538 MT1AP04731 61 aa0.38□□□□□ -2.35
HIF1A-212ENST00000557538 DEFB133Q30KQ1 61 aa0.38□□□□□ -2.35
HIF1A-212ENST00000557538 DEFB135Q30KP9 77 aa0.37□□□□□ -2.35
HIF1A-212ENST00000557538 KRTAP21-1Q3LI58 79 aa0.36□□□□□ -2.35
HIF1A-212ENST00000557538 KRTAP19-2Q3LHN2 52 aa0.36□□□□□ -2.35
HIF1A-212ENST00000557538 M0R2T5 61 aa0.35□□□□□ -2.35
HIF1A-212ENST00000557538 KRTAP19-3Q7Z4W3 81 aa0.35□□□□□ -2.35
HIF1A-212ENST00000557538 SPART-AS1P0CW21 52 aa0.33□□□□□ -2.36
HIF1A-212ENST00000557538 KRTAP6-2Q3LI66 62 aa0.33□□□□□ -2.36
HIF1A-212ENST00000557538 USH2AO75445 5202 aa0.33□□□□□ -2.36
HIF1A-212ENST00000557538 MT1EP04732 61 aa0.32□□□□□ -2.36
HIF1A-212ENST00000557538 DEFB4AO15263 64 aa0.31□□□□□ -2.36
HIF1A-212ENST00000557538 SPRR2GQ9BYE4 73 aa0.31□□□□□ -2.36
HIF1A-212ENST00000557538 MUC12Q9UKN1 5478 aa0.31□□□□□ -2.36
HIF1A-212ENST00000557538 SPRR2DP22532 72 aa0.3□□□□□ -2.36
HIF1A-212ENST00000557538 KRTAP19-6Q3LI70 58 aa0.3□□□□□ -2.36
HIF1A-212ENST00000557538 SPRR2FQ96RM1 72 aa0.3□□□□□ -2.36
HIF1A-212ENST00000557538 SPRR2EP22531 72 aa0.29□□□□□ -2.36
HIF1A-212ENST00000557538 SPRR2BP35325 72 aa0.29□□□□□ -2.36
HIF1A-212ENST00000557538 SPRR2AP35326 72 aa0.29□□□□□ -2.36
HIF1A-212ENST00000557538 MT1XP80297 61 aa0.29□□□□□ -2.36
HIF1A-212ENST00000557538 SYNE1Q8NF91 8797 aaKnown RBP0.28□□□□□ -2.37
HIF1A-212ENST00000557538 KRTAP19-7Q3SYF9 63 aa0.28□□□□□ -2.37
HIF1A-212ENST00000557538 MT1LQ93083 61 aa0.28□□□□□ -2.37
HIF1A-212ENST00000557538 KRTAP19-8Q3LI54 63 aa0.27□□□□□ -2.37
HIF1A-212ENST00000557538 HTN3P15516 51 aa0.26□□□□□ -2.37
HIF1A-212ENST00000557538 MT1HP80294 61 aa0.25□□□□□ -2.37
HIF1A-212ENST00000557538 MT4P47944 62 aa0.25□□□□□ -2.37
HIF1A-212ENST00000557538 MT1BP07438 61 aa0.24□□□□□ -2.37
HIF1A-212ENST00000557538 KRTAP6-1Q3LI64 71 aa0.21□□□□□ -2.38
HIF1A-212ENST00000557538 MT1GP13640 62 aa0.19□□□□□ -2.38
HIF1A-212ENST00000557538 MT1MQ8N339 61 aa0.18□□□□□ -2.38
HIF1A-212ENST00000557538 MT2AP02795 61 aa0.17□□□□□ -2.38
HIF1A-212ENST00000557538 MT1FP04733 61 aa0.17□□□□□ -2.38
HIF1A-212ENST00000557538 MT1HL1P0DM35 61 aa0.16□□□□□ -2.38
HIF1A-212ENST00000557538 KRTAP20-2Q3LI61 65 aa0.11□□□□□ -2.39
Retrieved 77 of 20,778 RNA–protein pairs in 13.8 ms