RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 MT3P25713 68 aa3.87□□□□□ -1.79
TDP1-208ENST00000553989 KRTAP12-1P59990 96 aa3.87□□□□□ -1.79
TDP1-208ENST00000553989 KRTAP12-2P59991 146 aa3.85□□□□□ -1.79
TDP1-208ENST00000553989 KMT2DO14686 5537 aa3.84□□□□□ -1.79
TDP1-208ENST00000553989 MDN1Q9NU22 5596 aa3.82□□□□□ -1.8
TDP1-208ENST00000553989 R4GN34 69 aa3.82□□□□□ -1.8
TDP1-208ENST00000553989 KRTAP2-3P0C7H8 128 aa3.81□□□□□ -1.8
TDP1-208ENST00000553989 KRTAP2-4Q9BYR9 128 aa3.81□□□□□ -1.8
TDP1-208ENST00000553989 SPRR2FQ96RM1 72 aa3.8□□□□□ -1.8
TDP1-208ENST00000553989 SPRR2EP22531 72 aa3.79□□□□□ -1.8
TDP1-208ENST00000553989 SPRR2BP35325 72 aa3.79□□□□□ -1.8
TDP1-208ENST00000553989 SPRR2AP35326 72 aa3.79□□□□□ -1.8
TDP1-208ENST00000553989 PRO2289Q9P1D8 64 aa3.77□□□□□ -1.81
TDP1-208ENST00000553989 KRTAP8-1Q8IUC2 63 aa3.73□□□□□ -1.81
TDP1-208ENST00000553989 PLAC4Q8WY50 150 aa3.72□□□□□ -1.81
TDP1-208ENST00000553989 C10orf95Q9H7T3 257 aa3.72□□□□□ -1.81
TDP1-208ENST00000553989 MT1XP80297 61 aa3.69□□□□□ -1.82
TDP1-208ENST00000553989 PP632Q6XCG6 107 aa3.69□□□□□ -1.82
TDP1-208ENST00000553989 KRTAP2-2Q9BYT5 123 aa3.68□□□□□ -1.82
TDP1-208ENST00000553989 KRTAP2-1Q9BYU5 128 aa3.68□□□□□ -1.82
TDP1-208ENST00000553989 SPRR2DP22532 72 aa3.67□□□□□ -1.82
TDP1-208ENST00000553989 CAMK2N1Q7Z7J9 78 aa3.64□□□□□ -1.83
TDP1-208ENST00000553989 KRTAP5-3Q6L8H2 238 aa3.59□□□□□ -1.83
TDP1-208ENST00000553989 TNP1P09430 55 aa3.55□□□□□ -1.84
TDP1-208ENST00000553989 KRTAP10-7P60409 375 aaPredicted RBP3.54□□□□□ -1.84
TDP1-208ENST00000553989 KRTAP10-12P60413 245 aa3.49□□□□□ -1.85
TDP1-208ENST00000553989 LCE1FQ5T754 118 aa3.48□□□□□ -1.85
TDP1-208ENST00000553989 LUZP6Q538Z0 58 aa3.47□□□□□ -1.85
TDP1-208ENST00000553989 GPR98Q8WXG9 6306 aa3.42□□□□□ -1.86
TDP1-208ENST00000553989 DSTQ03001 7570 aaKnown RBP3.41□□□□□ -1.86
TDP1-208ENST00000553989 SPRR5A0A1B0GTR4 108 aa3.33□□□□□ -1.88
TDP1-208ENST00000553989 KRTAP19-3Q7Z4W3 81 aa3.31□□□□□ -1.88
TDP1-208ENST00000553989 MT1EP04732 61 aa3.29□□□□□ -1.88
TDP1-208ENST00000553989 KRTAP19-7Q3SYF9 63 aa3.29□□□□□ -1.88
TDP1-208ENST00000553989 MT4P47944 62 aa3.23□□□□□ -1.89
TDP1-208ENST00000553989 LCE3CQ5T5A8 94 aa3.23□□□□□ -1.89
TDP1-208ENST00000553989 LCE3AQ5TA76 89 aa3.22□□□□□ -1.89
TDP1-208ENST00000553989 MT1GP13640 62 aa3.2□□□□□ -1.9
TDP1-208ENST00000553989 KRTAP19-5Q3LI72 72 aa3.2□□□□□ -1.9
TDP1-208ENST00000553989 MT1MQ8N339 61 aa3.15□□□□□ -1.91
TDP1-208ENST00000553989 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
TDP1-208ENST00000553989 KRTAP12-3P60328 96 aa3.14□□□□□ -1.91
TDP1-208ENST00000553989 MT1LQ93083 61 aa3.11□□□□□ -1.91
TDP1-208ENST00000553989 AHNAK2Q8IVF2 5795 aa3.09□□□□□ -1.91
TDP1-208ENST00000553989 KRTAP5-10Q6L8G5 202 aa3.09□□□□□ -1.91
TDP1-208ENST00000553989 KRTAP4-3Q9BYR4 195 aa3.09□□□□□ -1.91
TDP1-208ENST00000553989 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
TDP1-208ENST00000553989 INE1O15225 51 aa3.04□□□□□ -1.92
TDP1-208ENST00000553989 LCE1EQ5T753 118 aa3.04□□□□□ -1.92
TDP1-208ENST00000553989 KRTAP5-7Q6L8G8 165 aa2.99□□□□□ -1.93
TDP1-208ENST00000553989 KRTAP20-2Q3LI61 65 aa2.94□□□□□ -1.94
TDP1-208ENST00000553989 LCE3EQ5T5B0 92 aa2.94□□□□□ -1.94
TDP1-208ENST00000553989 KRTAP12-4P60329 112 aa2.9□□□□□ -1.95
TDP1-208ENST00000553989 KRTAP5-5Q701N2 237 aaPredicted RBP2.87□□□□□ -1.95
TDP1-208ENST00000553989 KRTAP9-6A8MVA2 160 aa2.78□□□□□ -1.96
TDP1-208ENST00000553989 SYNE1Q8NF91 8797 aaKnown RBP2.78□□□□□ -1.96
TDP1-208ENST00000553989 KRTAP5-11Q6L8G4 156 aa2.75□□□□□ -1.97
TDP1-208ENST00000553989 MT1AP04731 61 aa2.65□□□□□ -1.99
TDP1-208ENST00000553989 KRTAP5-2Q701N4 177 aa2.65□□□□□ -1.99
TDP1-208ENST00000553989 KRTAP6-1Q3LI64 71 aa2.64□□□□□ -1.99
TDP1-208ENST00000553989 KRTAP5-8O75690 187 aa2.63□□□□□ -1.99
TDP1-208ENST00000553989 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.6□□□□□ -1.99
TDP1-208ENST00000553989 AHNAKQ09666 5890 aaKnown RBP2.59□□□□□ -2
TDP1-208ENST00000553989 MUC5ACP98088 5654 aa2.59□□□□□ -2
TDP1-208ENST00000553989 KRTAP6-2Q3LI66 62 aa2.57□□□□□ -2
TDP1-208ENST00000553989 MUC5BQ9HC84 5762 aaPredicted RBP2.57□□□□□ -2
TDP1-208ENST00000553989 OBSCNQ5VST9 7968 aa2.55□□□□□ -2
TDP1-208ENST00000553989 LCE3DQ9BYE3 92 aa2.53□□□□□ -2
TDP1-208ENST00000553989 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
TDP1-208ENST00000553989 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
TDP1-208ENST00000553989 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
TDP1-208ENST00000553989 LCE1CQ5T751 118 aa2.09□□□□□ -2.07
TDP1-208ENST00000553989 PRM1P04553 51 aa2.08□□□□□ -2.08
TDP1-208ENST00000553989 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
TDP1-208ENST00000553989 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
TDP1-208ENST00000553989 MUC19Q7Z5P9 8384 aa1.57□□□□□ -2.16
TDP1-208ENST00000553989 KRTAP21-1Q3LI58 79 aa1.39□□□□□ -2.19
TDP1-208ENST00000553989 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 47.5 ms