RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 SMCO4Q9NRQ5 59 aa0.77□□□□□ -2.29
LIMA1-210ENST00000552045 PDCD5O14737 125 aa0.75□□□□□ -2.29
LIMA1-210ENST00000552045 PRLHP81277 87 aa0.75□□□□□ -2.29
LIMA1-210ENST00000552045 A0A1B0GUT8 65 aa0.74□□□□□ -2.29
LIMA1-210ENST00000552045 H0YAA0 97 aa0.73□□□□□ -2.29
LIMA1-210ENST00000552045 NDUFA1O15239 70 aa0.73□□□□□ -2.29
LIMA1-210ENST00000552045 SMIM13P0DJ93 91 aa0.73□□□□□ -2.29
LIMA1-210ENST00000552045 SPRR2GQ9BYE4 73 aa0.73□□□□□ -2.29
LIMA1-210ENST00000552045 TP53AIP1Q9HCN2 124 aa0.73□□□□□ -2.29
LIMA1-210ENST00000552045 TRAV21A0A0B4J279 112 aa0.72□□□□□ -2.29
LIMA1-210ENST00000552045 CRIPTQ9P021 101 aa0.71□□□□□ -2.3
LIMA1-210ENST00000552045 MT1XP80297 61 aa0.7□□□□□ -2.3
LIMA1-210ENST00000552045 SMIM31A0A1B0GVY4 71 aa0.69□□□□□ -2.3
LIMA1-210ENST00000552045 MT1GP13640 62 aa0.69□□□□□ -2.3
LIMA1-210ENST00000552045 ATP5EP2Q5VTU8 51 aa0.69□□□□□ -2.3
LIMA1-210ENST00000552045 C6orf48Q9UBA6 75 aa0.69□□□□□ -2.3
LIMA1-210ENST00000552045 A0A087WXM4 84 aa0.68□□□□□ -2.3
LIMA1-210ENST00000552045 UMAD1C9J7I0 102 aa0.68□□□□□ -2.3
LIMA1-210ENST00000552045 K7EQZ3 153 aa0.68□□□□□ -2.3
LIMA1-210ENST00000552045 IFI27P40305 119 aaPredicted RBP0.68□□□□□ -2.3
LIMA1-210ENST00000552045 COX7BP24311 80 aa0.67□□□□□ -2.3
LIMA1-210ENST00000552045 NMES1Q9C002 83 aa0.66□□□□□ -2.3
LIMA1-210ENST00000552045 H3BVH4 76 aa0.65□□□□□ -2.31
LIMA1-210ENST00000552045 NDUFB1O75438 58 aa0.65□□□□□ -2.31
LIMA1-210ENST00000552045 MT1EP04732 61 aa0.65□□□□□ -2.31
LIMA1-210ENST00000552045 NREPQ16612 68 aa0.65□□□□□ -2.31
LIMA1-210ENST00000552045 Q8IZM0 81 aa0.65□□□□□ -2.31
LIMA1-210ENST00000552045 MT1MQ8N339 61 aa0.65□□□□□ -2.31
LIMA1-210ENST00000552045 COX8AP10176 69 aa0.63□□□□□ -2.31
LIMA1-210ENST00000552045 ETDCA0A1B0GVM5 59 aa0.62□□□□□ -2.31
LIMA1-210ENST00000552045 IAPPP10997 89 aa0.61□□□□□ -2.31
LIMA1-210ENST00000552045 SPRR1AP35321 89 aa0.61□□□□□ -2.31
LIMA1-210ENST00000552045 KRTAP19-7Q3SYF9 63 aa0.61□□□□□ -2.31
LIMA1-210ENST00000552045 H1FX-AS1Q4G0G2 97 aa0.61□□□□□ -2.31
LIMA1-210ENST00000552045 WFDC13Q8IUB5 93 aa0.61□□□□□ -2.31
LIMA1-210ENST00000552045 FXYD6Q9H0Q3 95 aa0.61□□□□□ -2.31
LIMA1-210ENST00000552045 I3L3M4 83 aa0.6□□□□□ -2.31
LIMA1-210ENST00000552045 MRPL34Q9BQ48 92 aaKnown RBP0.6□□□□□ -2.31
LIMA1-210ENST00000552045 M0QY20 66 aa0.59□□□□□ -2.31
LIMA1-210ENST00000552045 SPRR1BP22528 89 aa0.59□□□□□ -2.31
LIMA1-210ENST00000552045 TOMM7Q9P0U1 55 aa0.59□□□□□ -2.31
LIMA1-210ENST00000552045 C3orf79P0CE67 100 aa0.57□□□□□ -2.32
LIMA1-210ENST00000552045 ATXN8Q156A1 80 aa0.57□□□□□ -2.32
LIMA1-210ENST00000552045 KRTAP6-2Q3LI66 62 aa0.56□□□□□ -2.32
LIMA1-210ENST00000552045 GNG13Q9P2W3 67 aa0.56□□□□□ -2.32
LIMA1-210ENST00000552045 DEFB105AQ8NG35 78 aa0.55□□□□□ -2.32
LIMA1-210ENST00000552045 MT1LQ93083 61 aa0.55□□□□□ -2.32
LIMA1-210ENST00000552045 FCER1GP30273 86 aa0.54□□□□□ -2.32
LIMA1-210ENST00000552045 S100ZQ8WXG8 99 aa0.54□□□□□ -2.32
LIMA1-210ENST00000552045 KRTAP19-5Q3LI72 72 aa0.53□□□□□ -2.32
LIMA1-210ENST00000552045 LINC01549A6NIU2 74 aa0.52□□□□□ -2.33
LIMA1-210ENST00000552045 KCNQ1DNQ9H478 68 aa0.52□□□□□ -2.33
LIMA1-210ENST00000552045 CRIP1P50238 77 aa0.51□□□□□ -2.33
LIMA1-210ENST00000552045 RPL39LQ96EH5 51 aaKnown RBP0.51□□□□□ -2.33
LIMA1-210ENST00000552045 S4R3F8 94 aa0.5□□□□□ -2.33
LIMA1-210ENST00000552045 CDKN2A-AS1Q9UH64 79 aa0.49□□□□□ -2.33
LIMA1-210ENST00000552045 KRTAP6-1Q3LI64 71 aa0.48□□□□□ -2.33
LIMA1-210ENST00000552045 SMIM2Q9BVW6 85 aa0.48□□□□□ -2.33
LIMA1-210ENST00000552045 UBL5Q9BZL1 73 aa0.48□□□□□ -2.33
LIMA1-210ENST00000552045 MT1AP04731 61 aa0.47□□□□□ -2.33
LIMA1-210ENST00000552045 K7EMI3 77 aa0.45□□□□□ -2.34
LIMA1-210ENST00000552045 POLR2KP53803 58 aaKnown RBP0.45□□□□□ -2.34
LIMA1-210ENST00000552045 LINC00158P58513 81 aa0.45□□□□□ -2.34
LIMA1-210ENST00000552045 RPL39P62891 51 aaKnown RBP0.45□□□□□ -2.34
LIMA1-210ENST00000552045 TMEM167BQ9NRX6 74 aa0.44□□□□□ -2.34
LIMA1-210ENST00000552045 M0QZ58 72 aa0.43□□□□□ -2.34
LIMA1-210ENST00000552045 IGLV5-48A0A075B6I7 105 aa0.39□□□□□ -2.35
LIMA1-210ENST00000552045 LINC01546A6NGU7 62 aa0.39□□□□□ -2.35
LIMA1-210ENST00000552045 PRM1P04553 51 aa0.39□□□□□ -2.35
LIMA1-210ENST00000552045 IGIPA6NJ69 53 aa0.37□□□□□ -2.35
LIMA1-210ENST00000552045 SERF2P84101 59 aa0.31□□□□□ -2.36
LIMA1-210ENST00000552045 TOMM5Q8N4H5 51 aa0.29□□□□□ -2.36
LIMA1-210ENST00000552045 LINC00308Q8TCZ7 52 aa0.26□□□□□ -2.37
LIMA1-210ENST00000552045 H0YGX0 51 aa0.24□□□□□ -2.37
LIMA1-210ENST00000552045 PLNP26678 52 aa0.23□□□□□ -2.37
LIMA1-210ENST00000552045 TNP1P09430 55 aa0.22□□□□□ -2.37
LIMA1-210ENST00000552045 MMP24-AS1A0A0U1RRL7 71 aa0.18□□□□□ -2.38
LIMA1-210ENST00000552045 SMIM27A0A1W2PRY6 76 aa0.17□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 55.2 ms