RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 VPS13BQ7Z7G8 4022 aa0.62□□□□□ -2.31
LIMA1-207ENST00000551486 ZNF469Q96JG9 3925 aaPredicted RBP0.62□□□□□ -2.31
LIMA1-207ENST00000551486 DEFB133Q30KQ1 61 aa0.62□□□□□ -2.31
LIMA1-207ENST00000551486 FRAS1Q86XX4 4008 aa0.61□□□□□ -2.31
LIMA1-207ENST00000551486 DYNC2H1Q8NCM8 4307 aaKnown RBP0.61□□□□□ -2.31
LIMA1-207ENST00000551486 HTN3P15516 51 aa0.61□□□□□ -2.31
LIMA1-207ENST00000551486 Q9Y3F1 56 aa0.61□□□□□ -2.31
LIMA1-207ENST00000551486 ACANP16112 2415 aa0.61□□□□□ -2.31
LIMA1-207ENST00000551486 PKHD1L1Q86WI1 4243 aa0.61□□□□□ -2.31
LIMA1-207ENST00000551486 DNAH3Q8TD57 4116 aa0.61□□□□□ -2.31
LIMA1-207ENST00000551486 HECTD4Q9Y4D8 3996 aa0.6□□□□□ -2.31
LIMA1-207ENST00000551486 DEFB4AO15263 64 aa0.6□□□□□ -2.31
LIMA1-207ENST00000551486 KRTAP5-10Q6L8G5 202 aa0.6□□□□□ -2.31
LIMA1-207ENST00000551486 ANK3Q12955 4377 aaKnown RBP0.59□□□□□ -2.31
LIMA1-207ENST00000551486 PRM1P04553 51 aa0.59□□□□□ -2.31
LIMA1-207ENST00000551486 DNAH1Q9P2D7 4330 aa0.59□□□□□ -2.32
LIMA1-207ENST00000551486 DNAH10Q8IVF4 4471 aa0.58□□□□□ -2.32
LIMA1-207ENST00000551486 DNAH2Q9P225 4427 aa0.58□□□□□ -2.32
LIMA1-207ENST00000551486 HSPG2P98160 4391 aa0.58□□□□□ -2.32
LIMA1-207ENST00000551486 APOBP04114 4563 aaKnown RBP0.58□□□□□ -2.32
LIMA1-207ENST00000551486 DNAH7Q8WXX0 4024 aa0.58□□□□□ -2.32
LIMA1-207ENST00000551486 CMYA5Q8N3K9 4069 aa0.58□□□□□ -2.32
LIMA1-207ENST00000551486 PKHD1P08F94 4074 aa0.57□□□□□ -2.32
LIMA1-207ENST00000551486 KRTAP8-1Q8IUC2 63 aa0.57□□□□□ -2.32
LIMA1-207ENST00000551486 FAT3Q8TDW7 4589 aa0.57□□□□□ -2.32
LIMA1-207ENST00000551486 TNXBP22105 4242 aa0.57□□□□□ -2.32
LIMA1-207ENST00000551486 SMR3BP02814 79 aaPredicted RBP0.56□□□□□ -2.32
LIMA1-207ENST00000551486 U3KQA8 63 aa0.56□□□□□ -2.32
LIMA1-207ENST00000551486 DNAH9Q9NYC9 4486 aa0.56□□□□□ -2.32
LIMA1-207ENST00000551486 PLECQ15149 4684 aaKnown RBP0.55□□□□□ -2.32
LIMA1-207ENST00000551486 TRRAPQ9Y4A5 3859 aa0.55□□□□□ -2.32
LIMA1-207ENST00000551486 HUWE1Q7Z6Z7 4374 aaKnown RBP0.54□□□□□ -2.32
LIMA1-207ENST00000551486 PKD1P98161 4303 aa0.54□□□□□ -2.32
LIMA1-207ENST00000551486 RPS29P62273 56 aaKnown RBP0.53□□□□□ -2.32
LIMA1-207ENST00000551486 DNAH6Q9C0G6 4158 aa0.53□□□□□ -2.32
LIMA1-207ENST00000551486 FAT1Q14517 4588 aa0.52□□□□□ -2.33
LIMA1-207ENST00000551486 DNAH17Q9UFH2 4485 aa0.52□□□□□ -2.33
LIMA1-207ENST00000551486 MUC16Q8WXI7 14507 aa0.52□□□□□ -2.33
LIMA1-207ENST00000551486 LRP1BQ9NZR2 4599 aa0.52□□□□□ -2.33
LIMA1-207ENST00000551486 DYNC1H1Q14204 4646 aaKnown RBP0.52□□□□□ -2.33
LIMA1-207ENST00000551486 FLGP20930 4061 aaPredicted RBP0.51□□□□□ -2.33
LIMA1-207ENST00000551486 LRP1Q07954 4544 aaKnown RBP0.51□□□□□ -2.33
LIMA1-207ENST00000551486 LRP2P98164 4655 aa0.51□□□□□ -2.33
LIMA1-207ENST00000551486 KRTAP19-3Q7Z4W3 81 aa0.51□□□□□ -2.33
LIMA1-207ENST00000551486 KRTAP19-5Q3LI72 72 aa0.5□□□□□ -2.33
LIMA1-207ENST00000551486 HRNRQ86YZ3 2850 aaPredicted RBP0.5□□□□□ -2.33
LIMA1-207ENST00000551486 DNAH5Q8TE73 4624 aa0.49□□□□□ -2.33
LIMA1-207ENST00000551486 MT1AP04731 61 aa0.48□□□□□ -2.33
LIMA1-207ENST00000551486 KRTAP6-2Q3LI66 62 aa0.48□□□□□ -2.33
LIMA1-207ENST00000551486 SYNE1Q8NF91 8797 aaKnown RBP0.48□□□□□ -2.33
LIMA1-207ENST00000551486 MUC17Q685J3 4493 aa0.48□□□□□ -2.33
LIMA1-207ENST00000551486 LPAP08519 4548 aa0.46□□□□□ -2.34
LIMA1-207ENST00000551486 STARD9Q9P2P6 4700 aa0.46□□□□□ -2.34
LIMA1-207ENST00000551486 SPRR2DP22532 72 aa0.43□□□□□ -2.34
LIMA1-207ENST00000551486 KRTAP21-1Q3LI58 79 aa0.43□□□□□ -2.34
LIMA1-207ENST00000551486 SPRR2BP35325 72 aa0.41□□□□□ -2.34
LIMA1-207ENST00000551486 SPRR2FQ96RM1 72 aa0.4□□□□□ -2.35
LIMA1-207ENST00000551486 MT1EP04732 61 aa0.39□□□□□ -2.35
LIMA1-207ENST00000551486 SPRR2AP35326 72 aa0.39□□□□□ -2.35
LIMA1-207ENST00000551486 SPRR2EP22531 72 aa0.37□□□□□ -2.35
LIMA1-207ENST00000551486 MT1LQ93083 61 aa0.37□□□□□ -2.35
LIMA1-207ENST00000551486 SPRR2GQ9BYE4 73 aa0.36□□□□□ -2.35
LIMA1-207ENST00000551486 MT1XP80297 61 aa0.35□□□□□ -2.35
LIMA1-207ENST00000551486 MT1HP80294 61 aa0.34□□□□□ -2.36
LIMA1-207ENST00000551486 PHGR1C9JFL3 82 aa0.33□□□□□ -2.36
LIMA1-207ENST00000551486 MT1GP13640 62 aa0.33□□□□□ -2.36
LIMA1-207ENST00000551486 KRTAP19-8Q3LI54 63 aa0.31□□□□□ -2.36
LIMA1-207ENST00000551486 KRTAP19-2Q3LHN2 52 aa0.3□□□□□ -2.36
LIMA1-207ENST00000551486 KRTAP19-6Q3LI70 58 aa0.3□□□□□ -2.36
LIMA1-207ENST00000551486 KRTAP19-7Q3SYF9 63 aa0.3□□□□□ -2.36
LIMA1-207ENST00000551486 MT1BP07438 61 aa0.28□□□□□ -2.36
LIMA1-207ENST00000551486 KRTAP6-1Q3LI64 71 aa0.28□□□□□ -2.36
LIMA1-207ENST00000551486 MT2AP02795 61 aa0.25□□□□□ -2.37
LIMA1-207ENST00000551486 MT4P47944 62 aa0.24□□□□□ -2.37
LIMA1-207ENST00000551486 MT1MQ8N339 61 aa0.24□□□□□ -2.37
LIMA1-207ENST00000551486 MT1FP04733 61 aa0.2□□□□□ -2.38
LIMA1-207ENST00000551486 MT1HL1P0DM35 61 aa0.17□□□□□ -2.38
LIMA1-207ENST00000551486 KRTAP20-2Q3LI61 65 aa0.13□□□□□ -2.39
Retrieved 78 of 20,778 RNA–protein pairs in 74.1 ms