RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 LINC00575Q6W349 94 aa1.6□□□□□ -2.15
LIMA1-205ENST00000550592 Q6ZQY7 126 aa1.6□□□□□ -2.15
LIMA1-205ENST00000550592 SPRR4Q96PI1 79 aa1.6□□□□□ -2.15
LIMA1-205ENST00000550592 LINC00959A0A1B0GUT2 108 aa1.59□□□□□ -2.15
LIMA1-205ENST00000550592 MT2AP02795 61 aa1.59□□□□□ -2.15
LIMA1-205ENST00000550592 SPRR2EP22531 72 aa1.59□□□□□ -2.15
LIMA1-205ENST00000550592 SPRR2BP35325 72 aa1.59□□□□□ -2.15
LIMA1-205ENST00000550592 SPRR2AP35326 72 aa1.59□□□□□ -2.15
LIMA1-205ENST00000550592 CDKN2A-AS1Q9UH64 79 aa1.59□□□□□ -2.15
LIMA1-205ENST00000550592 KRTAP26-1Q6PEX3 210 aa1.58□□□□□ -2.16
LIMA1-205ENST00000550592 M0QY20 66 aa1.57□□□□□ -2.16
LIMA1-205ENST00000550592 MT1FP04733 61 aa1.57□□□□□ -2.16
LIMA1-205ENST00000550592 ACYP2P14621 99 aa1.57□□□□□ -2.16
LIMA1-205ENST00000550592 Q8IZM0 81 aa1.57□□□□□ -2.16
LIMA1-205ENST00000550592 IGKV3OR2-268A0A0C4DH90 116 aa1.56□□□□□ -2.16
LIMA1-205ENST00000550592 TP53AIP1Q9HCN2 124 aa1.56□□□□□ -2.16
LIMA1-205ENST00000550592 CLPSL2Q6UWE3 100 aa1.55□□□□□ -2.16
LIMA1-205ENST00000550592 TOMM7Q9P0U1 55 aa1.55□□□□□ -2.16
LIMA1-205ENST00000550592 AHNAK2Q8IVF2 5795 aa1.54□□□□□ -2.16
LIMA1-205ENST00000550592 SPRR2DP22532 72 aa1.54□□□□□ -2.16
LIMA1-205ENST00000550592 UNQ6190/PRO20217Q6UXQ8 127 aa1.54□□□□□ -2.16
LIMA1-205ENST00000550592 SSBP3-AS1Q7Z2R9 100 aa1.54□□□□□ -2.16
LIMA1-205ENST00000550592 GVQW2A0A096LPI5 108 aaPredicted RBP1.53□□□□□ -2.16
LIMA1-205ENST00000550592 KRTAP5-10Q6L8G5 202 aa1.52□□□□□ -2.17
LIMA1-205ENST00000550592 WFDC13Q8IUB5 93 aa1.52□□□□□ -2.17
LIMA1-205ENST00000550592 LINC00472Q9H8W2 130 aa1.52□□□□□ -2.17
LIMA1-205ENST00000550592 K7EQZ3 153 aa1.51□□□□□ -2.17
LIMA1-205ENST00000550592 Q96NJ1 140 aa1.51□□□□□ -2.17
LIMA1-205ENST00000550592 SPRR2FQ96RM1 72 aa1.51□□□□□ -2.17
LIMA1-205ENST00000550592 IGLV5-48A0A075B6I7 105 aa1.5□□□□□ -2.17
LIMA1-205ENST00000550592 SPINK1P00995 79 aa1.5□□□□□ -2.17
LIMA1-205ENST00000550592 C6orf48Q9UBA6 75 aa1.5□□□□□ -2.17
LIMA1-205ENST00000550592 CRIPTQ9P021 101 aa1.49□□□□□ -2.17
LIMA1-205ENST00000550592 DEFB105AQ8NG35 78 aa1.48□□□□□ -2.17
LIMA1-205ENST00000550592 DSTQ03001 7570 aaKnown RBP1.46□□□□□ -2.18
LIMA1-205ENST00000550592 C9orf92A6NGG3 77 aa1.46□□□□□ -2.18
LIMA1-205ENST00000550592 RPS29P62273 56 aaKnown RBP1.46□□□□□ -2.18
LIMA1-205ENST00000550592 Q6ZRX8 168 aa1.46□□□□□ -2.18
LIMA1-205ENST00000550592 MRPL34Q9BQ48 92 aaKnown RBP1.46□□□□□ -2.18
LIMA1-205ENST00000550592 PLAC4Q8WY50 150 aa1.45□□□□□ -2.18
LIMA1-205ENST00000550592 RPL37P61927 97 aaKnown RBP1.44□□□□□ -2.18
LIMA1-205ENST00000550592 MMP24-AS1A0A0U1RRL7 71 aa1.41□□□□□ -2.18
LIMA1-205ENST00000550592 INE1O15225 51 aa1.41□□□□□ -2.18
LIMA1-205ENST00000550592 AHNAKQ09666 5890 aaKnown RBP1.4□□□□□ -2.19
LIMA1-205ENST00000550592 H1FX-AS1Q4G0G2 97 aa1.39□□□□□ -2.19
LIMA1-205ENST00000550592 KRTAP8-1Q8IUC2 63 aa1.39□□□□□ -2.19
LIMA1-205ENST00000550592 H0YAA0 97 aa1.37□□□□□ -2.19
LIMA1-205ENST00000550592 MT4P47944 62 aa1.37□□□□□ -2.19
LIMA1-205ENST00000550592 PRLHP81277 87 aa1.37□□□□□ -2.19
LIMA1-205ENST00000550592 SPRR1AP35321 89 aa1.34□□□□□ -2.19
LIMA1-205ENST00000550592 MT1BP07438 61 aa1.33□□□□□ -2.2
LIMA1-205ENST00000550592 SPRR1BP22528 89 aa1.33□□□□□ -2.2
LIMA1-205ENST00000550592 C10orf95Q9H7T3 257 aa1.32□□□□□ -2.2
LIMA1-205ENST00000550592 MUC5BQ9HC84 5762 aaPredicted RBP1.3□□□□□ -2.2
LIMA1-205ENST00000550592 KRTAP19-8Q3LI54 63 aa1.29□□□□□ -2.2
LIMA1-205ENST00000550592 MUC5ACP98088 5654 aa1.28□□□□□ -2.2
LIMA1-205ENST00000550592 S4R3F8 94 aa1.27□□□□□ -2.21
LIMA1-205ENST00000550592 A0A0D9SG42 100 aa1.26□□□□□ -2.21
LIMA1-205ENST00000550592 SPRR2GQ9BYE4 73 aa1.23□□□□□ -2.21
LIMA1-205ENST00000550592 M0QZ58 72 aa1.2□□□□□ -2.22
LIMA1-205ENST00000550592 KRTAP20-2Q3LI61 65 aa1.18□□□□□ -2.22
LIMA1-205ENST00000550592 MT1XP80297 61 aa1.16□□□□□ -2.22
LIMA1-205ENST00000550592 KRTAP19-3Q7Z4W3 81 aa1.14□□□□□ -2.23
LIMA1-205ENST00000550592 MT1GP13640 62 aa1.09□□□□□ -2.23
LIMA1-205ENST00000550592 TNP1P09430 55 aa1.08□□□□□ -2.24
LIMA1-205ENST00000550592 MT1EP04732 61 aa1.05□□□□□ -2.24
LIMA1-205ENST00000550592 KRTAP19-7Q3SYF9 63 aa1.03□□□□□ -2.24
LIMA1-205ENST00000550592 MT1MQ8N339 61 aa1.03□□□□□ -2.24
LIMA1-205ENST00000550592 SYNE1Q8NF91 8797 aaKnown RBP1.01□□□□□ -2.25
LIMA1-205ENST00000550592 MT1LQ93083 61 aa0.95□□□□□ -2.26
LIMA1-205ENST00000550592 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
LIMA1-205ENST00000550592 KRTAP19-5Q3LI72 72 aa0.92□□□□□ -2.26
LIMA1-205ENST00000550592 KRTAP6-2Q3LI66 62 aa0.86□□□□□ -2.27
LIMA1-205ENST00000550592 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.28
LIMA1-205ENST00000550592 MT1AP04731 61 aa0.81□□□□□ -2.28
LIMA1-205ENST00000550592 KRTAP6-1Q3LI64 71 aa0.81□□□□□ -2.28
LIMA1-205ENST00000550592 PRM1P04553 51 aa0.77□□□□□ -2.29
LIMA1-205ENST00000550592 KRTAP21-1Q3LI58 79 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 37.9 ms