RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 SMIM11BQ8TCY0 68 aa1.14□□□□□ -2.23
SYNE1-232ENST00000535081 MT2AP02795 61 aa1.13□□□□□ -2.23
SYNE1-232ENST00000535081 SPINK7P58062 85 aa1.13□□□□□ -2.23
SYNE1-232ENST00000535081 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.13□□□□□ -2.23
SYNE1-232ENST00000535081 COA5Q86WW8 74 aa1.13□□□□□ -2.23
SYNE1-232ENST00000535081 KCNQ1DNQ9H478 68 aa1.13□□□□□ -2.23
SYNE1-232ENST00000535081 SPATA8Q6RVD6 105 aa1.12□□□□□ -2.23
SYNE1-232ENST00000535081 FLGP20930 4061 aaPredicted RBP1.11□□□□□ -2.23
SYNE1-232ENST00000535081 A0A0G2JQZ4 141 aa1.11□□□□□ -2.23
SYNE1-232ENST00000535081 MT1FP04733 61 aa1.11□□□□□ -2.23
SYNE1-232ENST00000535081 COX7BP24311 80 aa1.11□□□□□ -2.23
SYNE1-232ENST00000535081 LINC00158P58513 81 aa1.11□□□□□ -2.23
SYNE1-232ENST00000535081 LINC00575Q6W349 94 aa1.11□□□□□ -2.23
SYNE1-232ENST00000535081 CDKN2A-AS1Q9UH64 79 aa1.11□□□□□ -2.23
SYNE1-232ENST00000535081 UQCR11O14957 56 aa1.1□□□□□ -2.23
SYNE1-232ENST00000535081 Q6ZRX8 168 aa1.1□□□□□ -2.23
SYNE1-232ENST00000535081 DMAC1Q96GE9 116 aa1.1□□□□□ -2.23
SYNE1-232ENST00000535081 KRTAP2-1Q9BYU5 128 aa1.1□□□□□ -2.23
SYNE1-232ENST00000535081 Q6ZQY7 126 aa1.09□□□□□ -2.23
SYNE1-232ENST00000535081 Q96NJ1 140 aa1.09□□□□□ -2.23
SYNE1-232ENST00000535081 MUC12Q9UKN1 5478 aa1.08□□□□□ -2.24
SYNE1-232ENST00000535081 SPRR2EP22531 72 aa1.08□□□□□ -2.24
SYNE1-232ENST00000535081 SPRR1AP35321 89 aa1.08□□□□□ -2.24
SYNE1-232ENST00000535081 SPRR2BP35325 72 aa1.08□□□□□ -2.24
SYNE1-232ENST00000535081 SPRR2AP35326 72 aa1.08□□□□□ -2.24
SYNE1-232ENST00000535081 AHNAK2Q8IVF2 5795 aa1.07□□□□□ -2.24
SYNE1-232ENST00000535081 A0A1B0GU69 56 aa1.07□□□□□ -2.24
SYNE1-232ENST00000535081 DEFB105AQ8NG35 78 aa1.07□□□□□ -2.24
SYNE1-232ENST00000535081 KMT2DO14686 5537 aa1.06□□□□□ -2.24
SYNE1-232ENST00000535081 SPRR1BP22528 89 aa1.06□□□□□ -2.24
SYNE1-232ENST00000535081 SPRR2DP22532 72 aa1.06□□□□□ -2.24
SYNE1-232ENST00000535081 LINC00472Q9H8W2 130 aa1.06□□□□□ -2.24
SYNE1-232ENST00000535081 IGLV5-48A0A075B6I7 105 aa1.05□□□□□ -2.24
SYNE1-232ENST00000535081 K7EQZ3 153 aa1.05□□□□□ -2.24
SYNE1-232ENST00000535081 SPRR2FQ96RM1 72 aa1.05□□□□□ -2.24
SYNE1-232ENST00000535081 ACYP2P14621 99 aa1.04□□□□□ -2.24
SYNE1-232ENST00000535081 TP53AIP1Q9HCN2 124 aa1.04□□□□□ -2.24
SYNE1-232ENST00000535081 PRO2289Q9P1D8 64 aa1.04□□□□□ -2.24
SYNE1-232ENST00000535081 WFDC13Q8IUB5 93 aa1.03□□□□□ -2.24
SYNE1-232ENST00000535081 GPR98Q8WXG9 6306 aa1.03□□□□□ -2.25
SYNE1-232ENST00000535081 KRTAP8-1Q8IUC2 63 aa1.01□□□□□ -2.25
SYNE1-232ENST00000535081 MMP24-AS1A0A0U1RRL7 71 aa0.99□□□□□ -2.25
SYNE1-232ENST00000535081 H1FX-AS1Q4G0G2 97 aa0.99□□□□□ -2.25
SYNE1-232ENST00000535081 H0YAA0 97 aa0.97□□□□□ -2.25
SYNE1-232ENST00000535081 MRPL34Q9BQ48 92 aaKnown RBP0.97□□□□□ -2.25
SYNE1-232ENST00000535081 CRIPTQ9P021 101 aa0.97□□□□□ -2.25
SYNE1-232ENST00000535081 MDN1Q9NU22 5596 aa0.97□□□□□ -2.25
SYNE1-232ENST00000535081 MT1BP07438 61 aa0.96□□□□□ -2.26
SYNE1-232ENST00000535081 KRTAP19-8Q3LI54 63 aa0.96□□□□□ -2.26
SYNE1-232ENST00000535081 PLAC4Q8WY50 150 aa0.96□□□□□ -2.26
SYNE1-232ENST00000535081 SPRR2GQ9BYE4 73 aa0.95□□□□□ -2.26
SYNE1-232ENST00000535081 S4R3F8 94 aa0.94□□□□□ -2.26
SYNE1-232ENST00000535081 INE1O15225 51 aa0.93□□□□□ -2.26
SYNE1-232ENST00000535081 MT4P47944 62 aa0.92□□□□□ -2.26
SYNE1-232ENST00000535081 DSTQ03001 7570 aaKnown RBP0.92□□□□□ -2.26
SYNE1-232ENST00000535081 C10orf95Q9H7T3 257 aa0.91□□□□□ -2.26
SYNE1-232ENST00000535081 MT1XP80297 61 aa0.87□□□□□ -2.27
SYNE1-232ENST00000535081 M0QZ58 72 aa0.85□□□□□ -2.27
SYNE1-232ENST00000535081 KRTAP19-3Q7Z4W3 81 aa0.84□□□□□ -2.27
SYNE1-232ENST00000535081 A0A0D9SG42 100 aa0.83□□□□□ -2.28
SYNE1-232ENST00000535081 MT1GP13640 62 aa0.82□□□□□ -2.28
SYNE1-232ENST00000535081 AHNAKQ09666 5890 aaKnown RBP0.81□□□□□ -2.28
SYNE1-232ENST00000535081 MT1EP04732 61 aa0.8□□□□□ -2.28
SYNE1-232ENST00000535081 KRTAP20-2Q3LI61 65 aa0.79□□□□□ -2.28
SYNE1-232ENST00000535081 KRTAP19-7Q3SYF9 63 aa0.77□□□□□ -2.29
SYNE1-232ENST00000535081 MT1MQ8N339 61 aa0.77□□□□□ -2.29
SYNE1-232ENST00000535081 MUC5ACP98088 5654 aa0.75□□□□□ -2.29
SYNE1-232ENST00000535081 KRTAP19-5Q3LI72 72 aa0.75□□□□□ -2.29
SYNE1-232ENST00000535081 MT1LQ93083 61 aa0.74□□□□□ -2.29
SYNE1-232ENST00000535081 MUC5BQ9HC84 5762 aaPredicted RBP0.72□□□□□ -2.29
SYNE1-232ENST00000535081 TNP1P09430 55 aa0.71□□□□□ -2.3
SYNE1-232ENST00000535081 SYNE1Q8NF91 8797 aaKnown RBP0.69□□□□□ -2.3
SYNE1-232ENST00000535081 MT1AP04731 61 aa0.64□□□□□ -2.31
SYNE1-232ENST00000535081 KRTAP6-2Q3LI66 62 aa0.64□□□□□ -2.31
SYNE1-232ENST00000535081 KRTAP6-1Q3LI64 71 aa0.62□□□□□ -2.31
SYNE1-232ENST00000535081 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
SYNE1-232ENST00000535081 PRM1P04553 51 aa0.53□□□□□ -2.32
SYNE1-232ENST00000535081 KRTAP21-1Q3LI58 79 aa0.46□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 50.3 ms