RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 MUC5ACP98088 5654 aa0.68□□□□□ -2.3
CD44-233ENST00000531141 A0A087WVE0 104 aa0.67□□□□□ -2.3
CD44-233ENST00000531141 TRAV21A0A0B4J279 112 aa0.67□□□□□ -2.3
CD44-233ENST00000531141 FCER1GP30273 86 aa0.67□□□□□ -2.3
CD44-233ENST00000531141 LINC00472Q9H8W2 130 aa0.67□□□□□ -2.3
CD44-233ENST00000531141 H0YGX0 51 aa0.66□□□□□ -2.3
CD44-233ENST00000531141 M0R3E3 92 aa0.66□□□□□ -2.3
CD44-233ENST00000531141 ARHGAP5-AS1Q96IT6 56 aa0.66□□□□□ -2.3
CD44-233ENST00000531141 A0A1B0GU69 56 aa0.65□□□□□ -2.31
CD44-233ENST00000531141 SMIM27A0A1W2PRY6 76 aa0.65□□□□□ -2.31
CD44-233ENST00000531141 SPATA8Q6RVD6 105 aa0.65□□□□□ -2.31
CD44-233ENST00000531141 KRTAP8-1Q8IUC2 63 aa0.65□□□□□ -2.31
CD44-233ENST00000531141 KCNQ1DNQ9H478 68 aa0.65□□□□□ -2.31
CD44-233ENST00000531141 TMEM167BQ9NRX6 74 aa0.65□□□□□ -2.31
CD44-233ENST00000531141 ETDCA0A1B0GVM5 59 aa0.64□□□□□ -2.31
CD44-233ENST00000531141 C9orf92A6NGG3 77 aa0.64□□□□□ -2.31
CD44-233ENST00000531141 SPINK1P00995 79 aa0.64□□□□□ -2.31
CD44-233ENST00000531141 COX7BP24311 80 aa0.64□□□□□ -2.31
CD44-233ENST00000531141 CLPSL2Q6UWE3 100 aa0.64□□□□□ -2.31
CD44-233ENST00000531141 LINC01546A6NGU7 62 aa0.63□□□□□ -2.31
CD44-233ENST00000531141 C10orf95Q9H7T3 257 aa0.63□□□□□ -2.31
CD44-233ENST00000531141 IGIPA6NJ69 53 aa0.61□□□□□ -2.31
CD44-233ENST00000531141 I3L3M4 83 aa0.61□□□□□ -2.31
CD44-233ENST00000531141 SPINK7P58062 85 aa0.61□□□□□ -2.31
CD44-233ENST00000531141 SSBP3-AS1Q7Z2R9 100 aa0.61□□□□□ -2.31
CD44-233ENST00000531141 SMIM2Q9BVW6 85 aa0.61□□□□□ -2.31
CD44-233ENST00000531141 CNFNQ9BYD5 112 aa0.61□□□□□ -2.31
CD44-233ENST00000531141 TP53AIP1Q9HCN2 124 aa0.61□□□□□ -2.31
CD44-233ENST00000531141 MT1BP07438 61 aa0.6□□□□□ -2.31
CD44-233ENST00000531141 RPS29P62273 56 aaKnown RBP0.6□□□□□ -2.31
CD44-233ENST00000531141 CRIPTQ9P021 101 aa0.6□□□□□ -2.31
CD44-233ENST00000531141 K7EQZ3 153 aa0.59□□□□□ -2.31
CD44-233ENST00000531141 NDUFA1O15239 70 aa0.59□□□□□ -2.31
CD44-233ENST00000531141 Q8IZM0 81 aa0.59□□□□□ -2.31
CD44-233ENST00000531141 CDKN2A-AS1Q9UH64 79 aa0.59□□□□□ -2.31
CD44-233ENST00000531141 A0A0D9SG42 100 aa0.58□□□□□ -2.32
CD44-233ENST00000531141 LINC00959A0A1B0GUT2 108 aa0.58□□□□□ -2.32
CD44-233ENST00000531141 LINC00158P58513 81 aa0.58□□□□□ -2.32
CD44-233ENST00000531141 KRTAP19-8Q3LI54 63 aa0.57□□□□□ -2.32
CD44-233ENST00000531141 LINC00308Q8TCZ7 52 aa0.57□□□□□ -2.32
CD44-233ENST00000531141 MRPL34Q9BQ48 92 aaKnown RBP0.57□□□□□ -2.32
CD44-233ENST00000531141 C6orf48Q9UBA6 75 aa0.57□□□□□ -2.32
CD44-233ENST00000531141 SYNE1Q8NF91 8797 aaKnown RBP0.56□□□□□ -2.32
CD44-233ENST00000531141 KRTAP20-2Q3LI61 65 aa0.56□□□□□ -2.32
CD44-233ENST00000531141 PRLHP81277 87 aa0.55□□□□□ -2.32
CD44-233ENST00000531141 IAPPP10997 89 aa0.54□□□□□ -2.32
CD44-233ENST00000531141 KRTAP19-3Q7Z4W3 81 aa0.54□□□□□ -2.32
CD44-233ENST00000531141 SPRR2GQ9BYE4 73 aa0.54□□□□□ -2.32
CD44-233ENST00000531141 IGLV5-48A0A075B6I7 105 aa0.53□□□□□ -2.32
CD44-233ENST00000531141 CRIP1P50238 77 aa0.53□□□□□ -2.32
CD44-233ENST00000531141 DEFB105AQ8NG35 78 aa0.52□□□□□ -2.33
CD44-233ENST00000531141 H0YAA0 97 aa0.51□□□□□ -2.33
CD44-233ENST00000531141 M0QY20 66 aa0.51□□□□□ -2.33
CD44-233ENST00000531141 POLR2KP53803 58 aaKnown RBP0.51□□□□□ -2.33
CD44-233ENST00000531141 H1FX-AS1Q4G0G2 97 aa0.51□□□□□ -2.33
CD44-233ENST00000531141 MT1GP13640 62 aa0.5□□□□□ -2.33
CD44-233ENST00000531141 MT1XP80297 61 aa0.5□□□□□ -2.33
CD44-233ENST00000531141 WFDC13Q8IUB5 93 aa0.5□□□□□ -2.33
CD44-233ENST00000531141 SPRR1AP35321 89 aa0.49□□□□□ -2.33
CD44-233ENST00000531141 MMP24-AS1A0A0U1RRL7 71 aa0.48□□□□□ -2.33
CD44-233ENST00000531141 RPL39P62891 51 aaKnown RBP0.48□□□□□ -2.33
CD44-233ENST00000531141 TOMM7Q9P0U1 55 aa0.48□□□□□ -2.33
CD44-233ENST00000531141 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
CD44-233ENST00000531141 SPRR1BP22528 89 aa0.47□□□□□ -2.33
CD44-233ENST00000531141 RPL39LQ96EH5 51 aaKnown RBP0.47□□□□□ -2.33
CD44-233ENST00000531141 MT1EP04732 61 aa0.46□□□□□ -2.34
CD44-233ENST00000531141 KRTAP19-7Q3SYF9 63 aa0.46□□□□□ -2.34
CD44-233ENST00000531141 MT1MQ8N339 61 aa0.46□□□□□ -2.34
CD44-233ENST00000531141 S4R3F8 94 aa0.46□□□□□ -2.34
CD44-233ENST00000531141 M0QZ58 72 aa0.45□□□□□ -2.34
CD44-233ENST00000531141 KRTAP21-1Q3LI58 79 aa0.45□□□□□ -2.34
CD44-233ENST00000531141 TNP1P09430 55 aa0.42□□□□□ -2.34
CD44-233ENST00000531141 MT1LQ93083 61 aa0.4□□□□□ -2.35
CD44-233ENST00000531141 KRTAP6-2Q3LI66 62 aa0.39□□□□□ -2.35
CD44-233ENST00000531141 KRTAP19-5Q3LI72 72 aa0.39□□□□□ -2.35
CD44-233ENST00000531141 KRTAP6-1Q3LI64 71 aa0.36□□□□□ -2.35
CD44-233ENST00000531141 MT1AP04731 61 aa0.33□□□□□ -2.36
CD44-233ENST00000531141 PRM1P04553 51 aa0.28□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 76 ms