RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 DYNC1H1Q14204 4646 aaKnown RBP0.72□□□□□ -2.29
CD44-216ENST00000525293 LRP1BQ9NZR2 4599 aa0.72□□□□□ -2.29
CD44-216ENST00000525293 ANK3Q12955 4377 aaKnown RBP0.72□□□□□ -2.29
CD44-216ENST00000525293 HECTD4Q9Y4D8 3996 aa0.72□□□□□ -2.29
CD44-216ENST00000525293 SRRM2Q9UQ35 2752 aaKnown RBP0.71□□□□□ -2.3
CD44-216ENST00000525293 DNAH11Q96DT5 4516 aa0.7□□□□□ -2.3
CD44-216ENST00000525293 SPART-AS1P0CW21 52 aa0.7□□□□□ -2.3
CD44-216ENST00000525293 DEFB135Q30KP9 77 aa0.7□□□□□ -2.3
CD44-216ENST00000525293 LYSTQ99698 3801 aa0.7□□□□□ -2.3
CD44-216ENST00000525293 DNAH9Q9NYC9 4486 aa0.7□□□□□ -2.3
CD44-216ENST00000525293 DNAH3Q8TD57 4116 aa0.7□□□□□ -2.3
CD44-216ENST00000525293 DNAH7Q8WXX0 4024 aa0.69□□□□□ -2.3
CD44-216ENST00000525293 LRP1Q07954 4544 aaKnown RBP0.69□□□□□ -2.3
CD44-216ENST00000525293 PKHD1P08F94 4074 aa0.69□□□□□ -2.3
CD44-216ENST00000525293 TNP1P09430 55 aa0.68□□□□□ -2.3
CD44-216ENST00000525293 FRAS1Q86XX4 4008 aa0.68□□□□□ -2.3
CD44-216ENST00000525293 HSPG2P98160 4391 aa0.67□□□□□ -2.3
CD44-216ENST00000525293 PKD1P98161 4303 aa0.67□□□□□ -2.3
CD44-216ENST00000525293 FAT2Q9NYQ8 4349 aa0.66□□□□□ -2.3
CD44-216ENST00000525293 APOBP04114 4563 aaKnown RBP0.66□□□□□ -2.3
CD44-216ENST00000525293 FAT1Q14517 4588 aa0.66□□□□□ -2.3
CD44-216ENST00000525293 M0R2T5 61 aa0.66□□□□□ -2.3
CD44-216ENST00000525293 SMR3AQ99954 134 aa0.66□□□□□ -2.3
CD44-216ENST00000525293 DNAH6Q9C0G6 4158 aa0.66□□□□□ -2.3
CD44-216ENST00000525293 LRP2P98164 4655 aa0.66□□□□□ -2.3
CD44-216ENST00000525293 DNAH10Q8IVF4 4471 aa0.65□□□□□ -2.3
CD44-216ENST00000525293 H3BNG1 76 aa0.65□□□□□ -2.31
CD44-216ENST00000525293 DNAH5Q8TE73 4624 aa0.65□□□□□ -2.31
CD44-216ENST00000525293 HUWE1Q7Z6Z7 4374 aaKnown RBP0.65□□□□□ -2.31
CD44-216ENST00000525293 C9orf92A6NGG3 77 aa0.64□□□□□ -2.31
CD44-216ENST00000525293 PRM1P04553 51 aa0.64□□□□□ -2.31
CD44-216ENST00000525293 STARD9Q9P2P6 4700 aa0.63□□□□□ -2.31
CD44-216ENST00000525293 HTN3P15516 51 aa0.63□□□□□ -2.31
CD44-216ENST00000525293 LINC01556Q5JQF7 62 aa0.63□□□□□ -2.31
CD44-216ENST00000525293 PKHD1L1Q86WI1 4243 aa0.62□□□□□ -2.31
CD44-216ENST00000525293 DNAH8Q96JB1 4490 aa0.61□□□□□ -2.31
CD44-216ENST00000525293 DEFB4AO15263 64 aa0.61□□□□□ -2.31
CD44-216ENST00000525293 VPS13BQ7Z7G8 4022 aa0.61□□□□□ -2.31
CD44-216ENST00000525293 KRTAP8-1Q8IUC2 63 aa0.6□□□□□ -2.31
CD44-216ENST00000525293 TNXBP22105 4242 aa0.59□□□□□ -2.32
CD44-216ENST00000525293 DNAH2Q9P225 4427 aa0.58□□□□□ -2.32
CD44-216ENST00000525293 SMR3BP02814 79 aaPredicted RBP0.58□□□□□ -2.32
CD44-216ENST00000525293 DNAH17Q9UFH2 4485 aa0.57□□□□□ -2.32
CD44-216ENST00000525293 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
CD44-216ENST00000525293 PHGR1C9JFL3 82 aa0.57□□□□□ -2.32
CD44-216ENST00000525293 MUC17Q685J3 4493 aa0.57□□□□□ -2.32
CD44-216ENST00000525293 KRTAP19-3Q7Z4W3 81 aa0.54□□□□□ -2.32
CD44-216ENST00000525293 KRTAP19-5Q3LI72 72 aa0.53□□□□□ -2.32
CD44-216ENST00000525293 RPS29P62273 56 aaKnown RBP0.52□□□□□ -2.33
CD44-216ENST00000525293 KRTAP6-2Q3LI66 62 aa0.51□□□□□ -2.33
CD44-216ENST00000525293 LPAP08519 4548 aa0.51□□□□□ -2.33
CD44-216ENST00000525293 SYNE1Q8NF91 8797 aaKnown RBP0.51□□□□□ -2.33
CD44-216ENST00000525293 KRTAP19-6Q3LI70 58 aa0.49□□□□□ -2.33
CD44-216ENST00000525293 FLGP20930 4061 aaPredicted RBP0.48□□□□□ -2.33
CD44-216ENST00000525293 MT1AP04731 61 aa0.47□□□□□ -2.33
CD44-216ENST00000525293 MT1HL1P0DM35 61 aa0.46□□□□□ -2.34
CD44-216ENST00000525293 KRTAP21-1Q3LI58 79 aa0.46□□□□□ -2.34
CD44-216ENST00000525293 SPRR2DP22532 72 aa0.45□□□□□ -2.34
CD44-216ENST00000525293 SPRR2BP35325 72 aa0.43□□□□□ -2.34
CD44-216ENST00000525293 SPRR2FQ96RM1 72 aa0.42□□□□□ -2.34
CD44-216ENST00000525293 SPRR2AP35326 72 aa0.4□□□□□ -2.35
CD44-216ENST00000525293 MT4P47944 62 aa0.4□□□□□ -2.35
CD44-216ENST00000525293 MT1HP80294 61 aa0.4□□□□□ -2.35
CD44-216ENST00000525293 KRTAP19-2Q3LHN2 52 aa0.4□□□□□ -2.35
CD44-216ENST00000525293 SPRR2EP22531 72 aa0.39□□□□□ -2.35
CD44-216ENST00000525293 MT1EP04732 61 aa0.38□□□□□ -2.35
CD44-216ENST00000525293 MT1FP04733 61 aa0.37□□□□□ -2.35
CD44-216ENST00000525293 MT1XP80297 61 aa0.37□□□□□ -2.35
CD44-216ENST00000525293 MT2AP02795 61 aa0.36□□□□□ -2.35
CD44-216ENST00000525293 MT1LQ93083 61 aa0.36□□□□□ -2.35
CD44-216ENST00000525293 SPRR2GQ9BYE4 73 aa0.36□□□□□ -2.35
CD44-216ENST00000525293 MT1GP13640 62 aa0.35□□□□□ -2.35
CD44-216ENST00000525293 MT1BP07438 61 aa0.33□□□□□ -2.36
CD44-216ENST00000525293 KRTAP19-8Q3LI54 63 aa0.33□□□□□ -2.36
CD44-216ENST00000525293 KRTAP19-7Q3SYF9 63 aa0.32□□□□□ -2.36
CD44-216ENST00000525293 KRTAP6-1Q3LI64 71 aa0.3□□□□□ -2.36
CD44-216ENST00000525293 MT1MQ8N339 61 aa0.27□□□□□ -2.37
CD44-216ENST00000525293 KRTAP20-2Q3LI61 65 aa0.25□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 71.4 ms