RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 MRPL33O75394 65 aaKnown RBP-0.89□□□□□ -2.55
CD44-215ENST00000525241 RPS27P42677 84 aaKnown RBP-0.89□□□□□ -2.55
CD44-215ENST00000525241 RPS27LQ71UM5 84 aaKnown RBP-0.89□□□□□ -2.55
CD44-215ENST00000525241 UBL5Q9BZL1 73 aa-0.89□□□□□ -2.55
CD44-215ENST00000525241 Q9Y3F1 56 aa-0.89□□□□□ -2.55
CD44-215ENST00000525241 CD52P31358 61 aa-0.9□□□□□ -2.55
CD44-215ENST00000525241 ENHOQ6UWT2 76 aa-0.9□□□□□ -2.55
CD44-215ENST00000525241 WT1-ASQ06250 92 aa-0.91□□□□□ -2.56
CD44-215ENST00000525241 DEFB114Q30KQ6 69 aa-0.93□□□□□ -2.56
CD44-215ENST00000525241 ETDCA0A1B0GVM5 59 aa-0.94□□□□□ -2.56
CD44-215ENST00000525241 DEFB110Q30KQ9 67 aa-0.94□□□□□ -2.56
CD44-215ENST00000525241 HTN3P15516 51 aa-0.95□□□□□ -2.56
CD44-215ENST00000525241 H3BUX3 64 aa-0.96□□□□□ -2.56
CD44-215ENST00000525241 NCBP2-AS2Q69YL0 99 aa-0.96□□□□□ -2.56
CD44-215ENST00000525241 IGLV5-48A0A075B6I7 105 aa-0.97□□□□□ -2.56
CD44-215ENST00000525241 H3BVH4 76 aa-0.98□□□□□ -2.57
CD44-215ENST00000525241 MINOS1Q5TGZ0 78 aa-0.98□□□□□ -2.57
CD44-215ENST00000525241 LINC01556Q5JQF7 62 aa-0.99□□□□□ -2.57
CD44-215ENST00000525241 HILPDAQ9Y5L2 63 aa-1□□□□□ -2.57
CD44-215ENST00000525241 C6orf48Q9UBA6 75 aa-1.01□□□□□ -2.57
CD44-215ENST00000525241 ATXN8Q156A1 80 aa-1.02□□□□□ -2.57
CD44-215ENST00000525241 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.02□□□□□ -2.57
CD44-215ENST00000525241 SPART-AS1P0CW21 52 aa-1.03□□□□□ -2.57
CD44-215ENST00000525241 WFDC10BQ8IUB3 73 aa-1.03□□□□□ -2.57
CD44-215ENST00000525241 MMP24-AS1A0A0U1RRL7 71 aa-1.04□□□□□ -2.58
CD44-215ENST00000525241 LEAP2Q969E1 77 aa-1.04□□□□□ -2.58
CD44-215ENST00000525241 COX14Q96I36 57 aa-1.04□□□□□ -2.58
CD44-215ENST00000525241 TNP1P09430 55 aa-1.05□□□□□ -2.58
CD44-215ENST00000525241 A0A096LNI7 61 aa-1.07□□□□□ -2.58
CD44-215ENST00000525241 A0A096LPF7 62 aa-1.07□□□□□ -2.58
CD44-215ENST00000525241 H3BUA1 57 aa-1.07□□□□□ -2.58
CD44-215ENST00000525241 SFTA3P0C7M3 94 aa-1.07□□□□□ -2.58
CD44-215ENST00000525241 A8MTW9 85 aa-1.08□□□□□ -2.58
CD44-215ENST00000525241 APELAP0DMC3 54 aa-1.08□□□□□ -2.58
CD44-215ENST00000525241 FCER1GP30273 86 aa-1.09□□□□□ -2.58
CD44-215ENST00000525241 SMCO4Q9NRQ5 59 aa-1.09□□□□□ -2.58
CD44-215ENST00000525241 CLPSL2Q6UWE3 100 aa-1.1□□□□□ -2.59
CD44-215ENST00000525241 PDCD5O14737 125 aa-1.11□□□□□ -2.59
CD44-215ENST00000525241 LINC01549A6NIU2 74 aa-1.12□□□□□ -2.59
CD44-215ENST00000525241 NOP10Q9NPE3 64 aaKnown RBP-1.12□□□□□ -2.59
CD44-215ENST00000525241 K7EMI3 77 aa-1.14□□□□□ -2.59
CD44-215ENST00000525241 GNG13Q9P2W3 67 aa-1.14□□□□□ -2.59
CD44-215ENST00000525241 LINC01546A6NGU7 62 aa-1.16□□□□□ -2.6
CD44-215ENST00000525241 M0QZ58 72 aa-1.16□□□□□ -2.6
CD44-215ENST00000525241 HTN1P15515 57 aa-1.16□□□□□ -2.6
CD44-215ENST00000525241 M0R1W7 72 aa-1.18□□□□□ -2.6
CD44-215ENST00000525241 IGIPA6NJ69 53 aa-1.19□□□□□ -2.6
CD44-215ENST00000525241 M0QY20 66 aa-1.19□□□□□ -2.6
CD44-215ENST00000525241 DEFB131AP59861 70 aa-1.24□□□□□ -2.61
CD44-215ENST00000525241 LINC00308Q8TCZ7 52 aa-1.24□□□□□ -2.61
CD44-215ENST00000525241 A0A087WWC5 75 aa-1.25□□□□□ -2.61
CD44-215ENST00000525241 TMEM167BQ9NRX6 74 aa-1.26□□□□□ -2.61
CD44-215ENST00000525241 KAAG1Q9UBP8 84 aa-1.26□□□□□ -2.61
CD44-215ENST00000525241 SERF2P84101 59 aa-1.29□□□□□ -2.62
CD44-215ENST00000525241 NMES1Q9C002 83 aa-1.29□□□□□ -2.62
CD44-215ENST00000525241 RHPN1-AS1Q9BWJ2 59 aa-1.31□□□□□ -2.62
CD44-215ENST00000525241 ABRACLQ9P1F3 81 aa-1.33□□□□□ -2.62
CD44-215ENST00000525241 SMIM27A0A1W2PRY6 76 aa-1.34□□□□□ -2.62
CD44-215ENST00000525241 H0YGX0 51 aa-1.37□□□□□ -2.63
CD44-215ENST00000525241 TMEM167AQ8TBQ9 72 aa-1.41□□□□□ -2.64
CD44-215ENST00000525241 PRCDQ00LT1 54 aa-1.44□□□□□ -2.64
CD44-215ENST00000525241 S100ZQ8WXG8 99 aa-1.44□□□□□ -2.64
CD44-215ENST00000525241 POLR2KP53803 58 aaKnown RBP-1.46□□□□□ -2.64
CD44-215ENST00000525241 SMIM31A0A1B0GVY4 71 aa-1.49□□□□□ -2.65
CD44-215ENST00000525241 NDUFA1O15239 70 aa-1.5□□□□□ -2.65
CD44-215ENST00000525241 PLNP26678 52 aa-1.5□□□□□ -2.65
CD44-215ENST00000525241 LINC01590Q5TEZ4 76 aa-1.51□□□□□ -2.65
CD44-215ENST00000525241 K7EIM0 57 aa-1.55□□□□□ -2.66
CD44-215ENST00000525241 SMIM2Q9BVW6 85 aa-1.55□□□□□ -2.66
CD44-215ENST00000525241 CMC2Q9NRP2 79 aa-1.59□□□□□ -2.66
CD44-215ENST00000525241 RPL39P5Q59GN2 51 aa-1.6□□□□□ -2.67
CD44-215ENST00000525241 TOMM7Q9P0U1 55 aa-1.65□□□□□ -2.67
CD44-215ENST00000525241 ARHGAP5-AS1Q96IT6 56 aa-1.69□□□□□ -2.68
CD44-215ENST00000525241 SNRPGP15A8MWD9 76 aa-1.78□□□□□ -2.69
CD44-215ENST00000525241 SNRPGP62308 76 aaKnown RBP-1.78□□□□□ -2.69
CD44-215ENST00000525241 RPL39LQ96EH5 51 aaKnown RBP-1.82□□□□□ -2.7
CD44-215ENST00000525241 RPL39P62891 51 aaKnown RBP-1.84□□□□□ -2.7
CD44-215ENST00000525241 TOMM5Q8N4H5 51 aa-2.07□□□□□ -2.74
Retrieved 78 of 20,778 RNA–protein pairs in 123 ms