RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 CDKN2A-AS1Q9UH64 79 aa1.47□□□□□ -2.17
CPNE3-201ENST00000517354 IAPPP10997 89 aa1.46□□□□□ -2.18
CPNE3-201ENST00000517354 CLPSL2Q6UWE3 100 aa1.46□□□□□ -2.18
CPNE3-201ENST00000517354 CNFNQ9BYD5 112 aa1.46□□□□□ -2.18
CPNE3-201ENST00000517354 LINC01546A6NGU7 62 aa1.43□□□□□ -2.18
CPNE3-201ENST00000517354 COX6B2Q6YFQ2 88 aa1.43□□□□□ -2.18
CPNE3-201ENST00000517354 LINC00158P58513 81 aa1.42□□□□□ -2.18
CPNE3-201ENST00000517354 KRTAP19-6Q3LI70 58 aa1.42□□□□□ -2.18
CPNE3-201ENST00000517354 FLGP20930 4061 aaPredicted RBP1.41□□□□□ -2.18
CPNE3-201ENST00000517354 SPINK1P00995 79 aa1.41□□□□□ -2.18
CPNE3-201ENST00000517354 KRTAP2-3P0C7H8 128 aa1.41□□□□□ -2.18
CPNE3-201ENST00000517354 Q8IZM0 81 aa1.41□□□□□ -2.18
CPNE3-201ENST00000517354 KRTAP2-4Q9BYR9 128 aa1.41□□□□□ -2.18
CPNE3-201ENST00000517354 MUC12Q9UKN1 5478 aa1.4□□□□□ -2.19
CPNE3-201ENST00000517354 H0YAA0 97 aa1.4□□□□□ -2.19
CPNE3-201ENST00000517354 H0YGX0 51 aa1.4□□□□□ -2.19
CPNE3-201ENST00000517354 M0QY20 66 aa1.39□□□□□ -2.19
CPNE3-201ENST00000517354 NDUFA1O15239 70 aa1.39□□□□□ -2.19
CPNE3-201ENST00000517354 RPS29P62273 56 aaKnown RBP1.39□□□□□ -2.19
CPNE3-201ENST00000517354 SPRR1AP35321 89 aa1.38□□□□□ -2.19
CPNE3-201ENST00000517354 KMT2DO14686 5537 aa1.38□□□□□ -2.19
CPNE3-201ENST00000517354 GPR98Q8WXG9 6306 aa1.36□□□□□ -2.19
CPNE3-201ENST00000517354 H1FX-AS1Q4G0G2 97 aa1.36□□□□□ -2.19
CPNE3-201ENST00000517354 LINC00308Q8TCZ7 52 aa1.36□□□□□ -2.19
CPNE3-201ENST00000517354 MT2AP02795 61 aa1.35□□□□□ -2.19
CPNE3-201ENST00000517354 KRTAP2-1Q9BYU5 128 aa1.35□□□□□ -2.19
CPNE3-201ENST00000517354 TMEM167BQ9NRX6 74 aa1.35□□□□□ -2.19
CPNE3-201ENST00000517354 C6orf48Q9UBA6 75 aa1.35□□□□□ -2.19
CPNE3-201ENST00000517354 DEFB105AQ8NG35 78 aa1.34□□□□□ -2.19
CPNE3-201ENST00000517354 MDN1Q9NU22 5596 aa1.34□□□□□ -2.2
CPNE3-201ENST00000517354 MT1FP04733 61 aa1.33□□□□□ -2.2
CPNE3-201ENST00000517354 SPRR1BP22528 89 aa1.33□□□□□ -2.2
CPNE3-201ENST00000517354 WFDC13Q8IUB5 93 aa1.33□□□□□ -2.2
CPNE3-201ENST00000517354 C9orf92A6NGG3 77 aa1.31□□□□□ -2.2
CPNE3-201ENST00000517354 PRLHP81277 87 aa1.31□□□□□ -2.2
CPNE3-201ENST00000517354 POLR2KP53803 58 aaKnown RBP1.29□□□□□ -2.2
CPNE3-201ENST00000517354 RPL39LQ96EH5 51 aaKnown RBP1.29□□□□□ -2.2
CPNE3-201ENST00000517354 TOMM7Q9P0U1 55 aa1.27□□□□□ -2.21
CPNE3-201ENST00000517354 SPRR2EP22531 72 aa1.26□□□□□ -2.21
CPNE3-201ENST00000517354 SPRR2BP35325 72 aa1.26□□□□□ -2.21
CPNE3-201ENST00000517354 SPRR2AP35326 72 aa1.26□□□□□ -2.21
CPNE3-201ENST00000517354 DSTQ03001 7570 aaKnown RBP1.25□□□□□ -2.21
CPNE3-201ENST00000517354 RPL39P62891 51 aaKnown RBP1.24□□□□□ -2.21
CPNE3-201ENST00000517354 KRTAP19-3Q7Z4W3 81 aa1.24□□□□□ -2.21
CPNE3-201ENST00000517354 SMIM2Q9BVW6 85 aa1.24□□□□□ -2.21
CPNE3-201ENST00000517354 SPRR2DP22532 72 aa1.23□□□□□ -2.21
CPNE3-201ENST00000517354 SPRR2FQ96RM1 72 aa1.23□□□□□ -2.21
CPNE3-201ENST00000517354 AHNAK2Q8IVF2 5795 aa1.17□□□□□ -2.22
CPNE3-201ENST00000517354 MT1BP07438 61 aa1.16□□□□□ -2.22
CPNE3-201ENST00000517354 KRTAP19-8Q3LI54 63 aa1.16□□□□□ -2.22
CPNE3-201ENST00000517354 KRTAP5-10Q6L8G5 202 aa1.16□□□□□ -2.22
CPNE3-201ENST00000517354 KRTAP8-1Q8IUC2 63 aa1.16□□□□□ -2.22
CPNE3-201ENST00000517354 SPRR2GQ9BYE4 73 aa1.13□□□□□ -2.23
CPNE3-201ENST00000517354 IGLV5-48A0A075B6I7 105 aa1.12□□□□□ -2.23
CPNE3-201ENST00000517354 S4R3F8 94 aa1.12□□□□□ -2.23
CPNE3-201ENST00000517354 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
CPNE3-201ENST00000517354 MMP24-AS1A0A0U1RRL7 71 aa1.07□□□□□ -2.24
CPNE3-201ENST00000517354 MT4P47944 62 aa1.07□□□□□ -2.24
CPNE3-201ENST00000517354 AHNAKQ09666 5890 aaKnown RBP1.07□□□□□ -2.24
CPNE3-201ENST00000517354 MT1XP80297 61 aa1.04□□□□□ -2.24
CPNE3-201ENST00000517354 MUC5BQ9HC84 5762 aaPredicted RBP1.02□□□□□ -2.25
CPNE3-201ENST00000517354 MUC5ACP98088 5654 aa1.01□□□□□ -2.25
CPNE3-201ENST00000517354 MT1GP13640 62 aa0.97□□□□□ -2.25
CPNE3-201ENST00000517354 KRTAP20-2Q3LI61 65 aa0.96□□□□□ -2.26
CPNE3-201ENST00000517354 MT1EP04732 61 aa0.93□□□□□ -2.26
CPNE3-201ENST00000517354 KRTAP19-7Q3SYF9 63 aa0.93□□□□□ -2.26
CPNE3-201ENST00000517354 MT1MQ8N339 61 aa0.91□□□□□ -2.26
CPNE3-201ENST00000517354 PRM1P04553 51 aa0.89□□□□□ -2.27
CPNE3-201ENST00000517354 SYNE1Q8NF91 8797 aaKnown RBP0.88□□□□□ -2.27
CPNE3-201ENST00000517354 M0QZ58 72 aa0.88□□□□□ -2.27
CPNE3-201ENST00000517354 MT1LQ93083 61 aa0.86□□□□□ -2.27
CPNE3-201ENST00000517354 KRTAP19-5Q3LI72 72 aa0.85□□□□□ -2.27
CPNE3-201ENST00000517354 KRTAP21-1Q3LI58 79 aa0.81□□□□□ -2.28
CPNE3-201ENST00000517354 KRTAP6-2Q3LI66 62 aa0.75□□□□□ -2.29
CPNE3-201ENST00000517354 MT1AP04731 61 aa0.74□□□□□ -2.29
CPNE3-201ENST00000517354 KRTAP6-1Q3LI64 71 aa0.73□□□□□ -2.29
CPNE3-201ENST00000517354 TNP1P09430 55 aa0.72□□□□□ -2.29
CPNE3-201ENST00000517354 PHGR1C9JFL3 82 aa0.69□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 88.3 ms