RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 INE1O15225 51 aa2.92□□□□□ -1.94
SSBP1-213ENST00000496622 KRTAP13-4Q3LI77 160 aa2.91□□□□□ -1.94
SSBP1-213ENST00000496622 MACF1Q9UPN3 7388 aaKnown RBP2.9□□□□□ -1.95
SSBP1-213ENST00000496622 FCGBPQ9Y6R7 5405 aaPredicted RBP2.89□□□□□ -1.95
SSBP1-213ENST00000496622 KRTAP2-1Q9BYU5 128 aa2.88□□□□□ -1.95
SSBP1-213ENST00000496622 LCE1EQ5T753 118 aa2.88□□□□□ -1.95
SSBP1-213ENST00000496622 FLGP20930 4061 aaPredicted RBP2.86□□□□□ -1.95
SSBP1-213ENST00000496622 LCE3CQ5T5A8 94 aa2.86□□□□□ -1.95
SSBP1-213ENST00000496622 KRTAP10-12P60413 245 aa2.85□□□□□ -1.95
SSBP1-213ENST00000496622 KRTAP12-2P59991 146 aa2.84□□□□□ -1.95
SSBP1-213ENST00000496622 KRTAP10-5P60370 271 aa2.83□□□□□ -1.96
SSBP1-213ENST00000496622 M0R2T5 61 aa2.8□□□□□ -1.96
SSBP1-213ENST00000496622 KRTAP5-9P26371 169 aa2.8□□□□□ -1.96
SSBP1-213ENST00000496622 M0QZ58 72 aa2.8□□□□□ -1.96
SSBP1-213ENST00000496622 MT1HP80294 61 aa2.78□□□□□ -1.96
SSBP1-213ENST00000496622 KRTAP5-7Q6L8G8 165 aa2.77□□□□□ -1.97
SSBP1-213ENST00000496622 KRTAP12-1P59990 96 aa2.76□□□□□ -1.97
SSBP1-213ENST00000496622 PP632Q6XCG6 107 aa2.72□□□□□ -1.97
SSBP1-213ENST00000496622 SPRR5A0A1B0GTR4 108 aa2.71□□□□□ -1.98
SSBP1-213ENST00000496622 MT1FP04733 61 aa2.7□□□□□ -1.98
SSBP1-213ENST00000496622 KRTAP10-10P60014 251 aa2.69□□□□□ -1.98
SSBP1-213ENST00000496622 MT2AP02795 61 aa2.69□□□□□ -1.98
SSBP1-213ENST00000496622 AHNAK2Q8IVF2 5795 aa2.68□□□□□ -1.98
SSBP1-213ENST00000496622 MUC5BQ9HC84 5762 aaPredicted RBP2.68□□□□□ -1.98
SSBP1-213ENST00000496622 KMT2DO14686 5537 aa2.68□□□□□ -1.98
SSBP1-213ENST00000496622 AHNAKQ09666 5890 aaKnown RBP2.67□□□□□ -1.98
SSBP1-213ENST00000496622 KRTAP9-6A8MVA2 160 aa2.66□□□□□ -1.98
SSBP1-213ENST00000496622 KRTAP5-10Q6L8G5 202 aa2.66□□□□□ -1.98
SSBP1-213ENST00000496622 LCE3EQ5T5B0 92 aa2.63□□□□□ -1.99
SSBP1-213ENST00000496622 MUC12Q9UKN1 5478 aa2.62□□□□□ -1.99
SSBP1-213ENST00000496622 SPRR2GQ9BYE4 73 aa2.61□□□□□ -1.99
SSBP1-213ENST00000496622 KRTAP19-6Q3LI70 58 aa2.6□□□□□ -1.99
SSBP1-213ENST00000496622 KRTAP5-1Q6L8H4 278 aa2.56□□□□□ -2
SSBP1-213ENST00000496622 OBSCNQ5VST9 7968 aa2.56□□□□□ -2
SSBP1-213ENST00000496622 KRTAP5-4Q6L8H1 288 aa2.55□□□□□ -2
SSBP1-213ENST00000496622 MT1BP07438 61 aa2.55□□□□□ -2
SSBP1-213ENST00000496622 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
SSBP1-213ENST00000496622 KRTAP19-8Q3LI54 63 aa2.51□□□□□ -2.01
SSBP1-213ENST00000496622 MT1XP80297 61 aa2.49□□□□□ -2.01
SSBP1-213ENST00000496622 TNP1P09430 55 aa2.45□□□□□ -2.02
SSBP1-213ENST00000496622 KRTAP4-4Q9BYR3 166 aa2.42□□□□□ -2.02
SSBP1-213ENST00000496622 LCE3AQ5TA76 89 aa2.41□□□□□ -2.02
SSBP1-213ENST00000496622 SPRR2EP22531 72 aa2.39□□□□□ -2.03
SSBP1-213ENST00000496622 SPRR2BP35325 72 aa2.39□□□□□ -2.03
SSBP1-213ENST00000496622 SPRR2AP35326 72 aa2.39□□□□□ -2.03
SSBP1-213ENST00000496622 SPRR2DP22532 72 aa2.35□□□□□ -2.03
SSBP1-213ENST00000496622 DSTQ03001 7570 aaKnown RBP2.32□□□□□ -2.04
SSBP1-213ENST00000496622 MUC5ACP98088 5654 aa2.32□□□□□ -2.04
SSBP1-213ENST00000496622 KRTAP12-3P60328 96 aa2.28□□□□□ -2.04
SSBP1-213ENST00000496622 KRTAP8-1Q8IUC2 63 aa2.28□□□□□ -2.04
SSBP1-213ENST00000496622 KRTAP19-5Q3LI72 72 aa2.28□□□□□ -2.04
SSBP1-213ENST00000496622 KRTAP19-7Q3SYF9 63 aa2.22□□□□□ -2.05
SSBP1-213ENST00000496622 KRTAP5-2Q701N4 177 aa2.2□□□□□ -2.06
SSBP1-213ENST00000496622 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
SSBP1-213ENST00000496622 KRTAP4-3Q9BYR4 195 aa2.17□□□□□ -2.06
SSBP1-213ENST00000496622 LCE3DQ9BYE3 92 aa2.16□□□□□ -2.06
SSBP1-213ENST00000496622 MT1EP04732 61 aa2.15□□□□□ -2.07
SSBP1-213ENST00000496622 SPRR2FQ96RM1 72 aa2.15□□□□□ -2.07
SSBP1-213ENST00000496622 MT1LQ93083 61 aa2.12□□□□□ -2.07
SSBP1-213ENST00000496622 KRTAP5-5Q701N2 237 aaPredicted RBP2.1□□□□□ -2.07
SSBP1-213ENST00000496622 SYNE1Q8NF91 8797 aaKnown RBP2.09□□□□□ -2.07
SSBP1-213ENST00000496622 KRTAP12-4P60329 112 aa2.06□□□□□ -2.08
SSBP1-213ENST00000496622 KRTAP19-3Q7Z4W3 81 aa2.04□□□□□ -2.08
SSBP1-213ENST00000496622 MT1GP13640 62 aa2.03□□□□□ -2.09
SSBP1-213ENST00000496622 MT4P47944 62 aa2.02□□□□□ -2.09
SSBP1-213ENST00000496622 MT1MQ8N339 61 aa2.02□□□□□ -2.09
SSBP1-213ENST00000496622 LCE1CQ5T751 118 aa1.9□□□□□ -2.1
SSBP1-213ENST00000496622 LCE1BQ5T7P3 118 aa1.9□□□□□ -2.1
SSBP1-213ENST00000496622 PRM1P04553 51 aa1.84□□□□□ -2.12
SSBP1-213ENST00000496622 KRTAP6-1Q3LI64 71 aa1.83□□□□□ -2.12
SSBP1-213ENST00000496622 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
SSBP1-213ENST00000496622 KRTAP20-2Q3LI61 65 aa1.76□□□□□ -2.13
SSBP1-213ENST00000496622 MT1AP04731 61 aa1.75□□□□□ -2.13
SSBP1-213ENST00000496622 KRTAP6-2Q3LI66 62 aa1.68□□□□□ -2.14
SSBP1-213ENST00000496622 PHGR1C9JFL3 82 aa1.56□□□□□ -2.16
SSBP1-213ENST00000496622 KRTAP21-2Q3LI59 83 aa1.41□□□□□ -2.18
SSBP1-213ENST00000496622 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
SSBP1-213ENST00000496622 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 65.7 ms