RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DEFB130BP0DP73 79 aa0.82□□□□□ -2.28
VPS41-213ENST00000485955 DEFB130AP0DP74 79 aa0.82□□□□□ -2.28
VPS41-213ENST00000485955 DEFB104AQ8WTQ1 72 aa0.82□□□□□ -2.28
VPS41-213ENST00000485955 KLK9Q2XQG4 91 aa0.81□□□□□ -2.28
VPS41-213ENST00000485955 H3BUX3 64 aa0.79□□□□□ -2.28
VPS41-213ENST00000485955 H3BSH0 61 aa0.77□□□□□ -2.29
VPS41-213ENST00000485955 MT1FP04733 61 aa0.77□□□□□ -2.29
VPS41-213ENST00000485955 SPRR2EP22531 72 aa0.77□□□□□ -2.29
VPS41-213ENST00000485955 SPRR2BP35325 72 aa0.77□□□□□ -2.29
VPS41-213ENST00000485955 SPRR2AP35326 72 aa0.77□□□□□ -2.29
VPS41-213ENST00000485955 WT1-ASQ06250 92 aa0.77□□□□□ -2.29
VPS41-213ENST00000485955 WFDC10BQ8IUB3 73 aa0.77□□□□□ -2.29
VPS41-213ENST00000485955 H3BUA1 57 aa0.75□□□□□ -2.29
VPS41-213ENST00000485955 DEFB4AO15263 64 aa0.75□□□□□ -2.29
VPS41-213ENST00000485955 MT2AP02795 61 aa0.75□□□□□ -2.29
VPS41-213ENST00000485955 KAAG1Q9UBP8 84 aa0.75□□□□□ -2.29
VPS41-213ENST00000485955 SPRR2DP22532 72 aa0.74□□□□□ -2.29
VPS41-213ENST00000485955 S4R3F8 94 aa0.74□□□□□ -2.29
VPS41-213ENST00000485955 IGLV5-48A0A075B6I7 105 aa0.73□□□□□ -2.29
VPS41-213ENST00000485955 DEFB135Q30KP9 77 aa0.73□□□□□ -2.29
VPS41-213ENST00000485955 MMP24-AS1A0A0U1RRL7 71 aa0.72□□□□□ -2.29
VPS41-213ENST00000485955 DEFB131AP59861 70 aa0.72□□□□□ -2.29
VPS41-213ENST00000485955 PRLHP81277 87 aa0.72□□□□□ -2.29
VPS41-213ENST00000485955 MT4P47944 62 aa0.71□□□□□ -2.3
VPS41-213ENST00000485955 SPRR2FQ96RM1 72 aa0.69□□□□□ -2.3
VPS41-213ENST00000485955 POLR2KP53803 58 aaKnown RBP0.67□□□□□ -2.3
VPS41-213ENST00000485955 RPL39P62891 51 aaKnown RBP0.67□□□□□ -2.3
VPS41-213ENST00000485955 NOP10Q9NPE3 64 aaKnown RBP0.67□□□□□ -2.3
VPS41-213ENST00000485955 SPINK6Q6UWN8 80 aa0.65□□□□□ -2.31
VPS41-213ENST00000485955 RPL39LQ96EH5 51 aaKnown RBP0.65□□□□□ -2.31
VPS41-213ENST00000485955 ARHGAP5-AS1Q96IT6 56 aa0.65□□□□□ -2.31
VPS41-213ENST00000485955 M0QY20 66 aa0.63□□□□□ -2.31
VPS41-213ENST00000485955 M0R2T5 61 aa0.63□□□□□ -2.31
VPS41-213ENST00000485955 SPINK1P00995 79 aa0.62□□□□□ -2.31
VPS41-213ENST00000485955 MT1BP07438 61 aa0.62□□□□□ -2.31
VPS41-213ENST00000485955 KRTAP20-2Q3LI61 65 aa0.61□□□□□ -2.31
VPS41-213ENST00000485955 CLPSL2Q6UWE3 100 aa0.61□□□□□ -2.31
VPS41-213ENST00000485955 SYNE1Q8NF91 8797 aaKnown RBP0.61□□□□□ -2.31
VPS41-213ENST00000485955 A8MTW9 85 aa0.6□□□□□ -2.31
VPS41-213ENST00000485955 LEAP2Q969E1 77 aa0.6□□□□□ -2.31
VPS41-213ENST00000485955 TTTY10Q9BZA0 68 aa0.6□□□□□ -2.31
VPS41-213ENST00000485955 KRTAP19-3Q7Z4W3 81 aa0.59□□□□□ -2.31
VPS41-213ENST00000485955 HTN3P15516 51 aa0.58□□□□□ -2.32
VPS41-213ENST00000485955 LINC01590Q5TEZ4 76 aa0.57□□□□□ -2.32
VPS41-213ENST00000485955 TOMM7Q9P0U1 55 aa0.57□□□□□ -2.32
VPS41-213ENST00000485955 M0QZ58 72 aa0.56□□□□□ -2.32
VPS41-213ENST00000485955 PRM1P04553 51 aa0.56□□□□□ -2.32
VPS41-213ENST00000485955 PRCDQ00LT1 54 aa0.55□□□□□ -2.32
VPS41-213ENST00000485955 A0A096LPF7 62 aa0.54□□□□□ -2.32
VPS41-213ENST00000485955 DEFB1P60022 68 aa0.54□□□□□ -2.32
VPS41-213ENST00000485955 C9orf92A6NGG3 77 aa0.53□□□□□ -2.32
VPS41-213ENST00000485955 KRTAP8-1Q8IUC2 63 aa0.53□□□□□ -2.32
VPS41-213ENST00000485955 H3BNG1 76 aa0.52□□□□□ -2.33
VPS41-213ENST00000485955 TNP1P09430 55 aa0.52□□□□□ -2.33
VPS41-213ENST00000485955 PHGR1C9JFL3 82 aa0.51□□□□□ -2.33
VPS41-213ENST00000485955 SPART-AS1P0CW21 52 aa0.51□□□□□ -2.33
VPS41-213ENST00000485955 APELAP0DMC3 54 aa0.5□□□□□ -2.33
VPS41-213ENST00000485955 KRTAP19-8Q3LI54 63 aa0.49□□□□□ -2.33
VPS41-213ENST00000485955 MT1XP80297 61 aa0.47□□□□□ -2.33
VPS41-213ENST00000485955 K7EIM0 57 aa0.46□□□□□ -2.34
VPS41-213ENST00000485955 LINC01556Q5JQF7 62 aa0.46□□□□□ -2.34
VPS41-213ENST00000485955 A0A096LNI7 61 aa0.45□□□□□ -2.34
VPS41-213ENST00000485955 KRTAP21-1Q3LI58 79 aa0.45□□□□□ -2.34
VPS41-213ENST00000485955 KRTAP19-7Q3SYF9 63 aa0.44□□□□□ -2.34
VPS41-213ENST00000485955 TMEM167AQ8TBQ9 72 aa0.44□□□□□ -2.34
VPS41-213ENST00000485955 RHPN1-AS1Q9BWJ2 59 aa0.44□□□□□ -2.34
VPS41-213ENST00000485955 RPL39P5Q59GN2 51 aa0.43□□□□□ -2.34
VPS41-213ENST00000485955 MT1EP04732 61 aa0.42□□□□□ -2.34
VPS41-213ENST00000485955 MT1MQ8N339 61 aa0.42□□□□□ -2.34
VPS41-213ENST00000485955 SPRR2GQ9BYE4 73 aa0.4□□□□□ -2.35
VPS41-213ENST00000485955 KRTAP6-2Q3LI66 62 aa0.38□□□□□ -2.35
VPS41-213ENST00000485955 MT1AP04731 61 aa0.36□□□□□ -2.35
VPS41-213ENST00000485955 HTN1P15515 57 aa0.34□□□□□ -2.36
VPS41-213ENST00000485955 MT1GP13640 62 aa0.33□□□□□ -2.36
VPS41-213ENST00000485955 KRTAP6-1Q3LI64 71 aa0.33□□□□□ -2.36
VPS41-213ENST00000485955 KRTAP19-5Q3LI72 72 aa0.33□□□□□ -2.36
VPS41-213ENST00000485955 MT1LQ93083 61 aa0.33□□□□□ -2.36
VPS41-213ENST00000485955 RPS29P62273 56 aaKnown RBP0.26□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 138.6 ms