RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SYCP2Q9BX26 1530 aa-1.15□□□□□ -2.59
VPS50-216ENST00000484954 GNG13Q9P2W3 67 aa-1.16□□□□□ -2.6
VPS50-216ENST00000484954 ABCA9Q8IUA7 1624 aa-1.16□□□□□ -2.6
VPS50-216ENST00000484954 CCDC180Q9P1Z9 1646 aa-1.16□□□□□ -2.6
VPS50-216ENST00000484954 NRXN3Q9Y4C0 1643 aa-1.16□□□□□ -2.6
VPS50-216ENST00000484954 H0YGX0 51 aa-1.17□□□□□ -2.6
VPS50-216ENST00000484954 SERF2P84101 59 aa-1.17□□□□□ -2.6
VPS50-216ENST00000484954 ABCA6Q8N139 1617 aa-1.18□□□□□ -2.6
VPS50-216ENST00000484954 MROH2AA6NES4 1674 aa-1.18□□□□□ -2.6
VPS50-216ENST00000484954 PEG3Q9GZU2 1588 aa-1.2□□□□□ -2.6
VPS50-216ENST00000484954 DEFB133Q30KQ1 61 aa-1.2□□□□□ -2.6
VPS50-216ENST00000484954 S100ZQ8WXG8 99 aa-1.2□□□□□ -2.6
VPS50-216ENST00000484954 SMIM2Q9BVW6 85 aa-1.2□□□□□ -2.6
VPS50-216ENST00000484954 DUOX2Q9NRD8 1548 aa-1.2□□□□□ -2.6
VPS50-216ENST00000484954 IQGAP3Q86VI3 1631 aa-1.21□□□□□ -2.6
VPS50-216ENST00000484954 AGLP35573 1532 aa-1.21□□□□□ -2.6
VPS50-216ENST00000484954 UGGT2Q9NYU1 1516 aa-1.23□□□□□ -2.61
VPS50-216ENST00000484954 A0A096LNI7 61 aa-1.23□□□□□ -2.61
VPS50-216ENST00000484954 GNG2P59768 71 aa-1.23□□□□□ -2.61
VPS50-216ENST00000484954 RHPN1-AS1Q9BWJ2 59 aa-1.23□□□□□ -2.61
VPS50-216ENST00000484954 UGGT1Q9NYU2 1555 aa-1.23□□□□□ -2.61
VPS50-216ENST00000484954 TRPM2O94759 1503 aa-1.24□□□□□ -2.61
VPS50-216ENST00000484954 PLNP26678 52 aa-1.24□□□□□ -2.61
VPS50-216ENST00000484954 CCDC18Q5T9S5 1454 aa-1.24□□□□□ -2.61
VPS50-216ENST00000484954 DDX60Q8IY21 1712 aaKnown RBP-1.25□□□□□ -2.61
VPS50-216ENST00000484954 HTN1P15515 57 aa-1.25□□□□□ -2.61
VPS50-216ENST00000484954 CD52P31358 61 aa-1.25□□□□□ -2.61
VPS50-216ENST00000484954 LINC01590Q5TEZ4 76 aa-1.25□□□□□ -2.61
VPS50-216ENST00000484954 TOMM7Q9P0U1 55 aa-1.25□□□□□ -2.61
VPS50-216ENST00000484954 PRXQ9BXM0 1461 aa-1.25□□□□□ -2.61
VPS50-216ENST00000484954 NFAT5O94916 1531 aa-1.25□□□□□ -2.61
VPS50-216ENST00000484954 CPS1P31327 1500 aa-1.25□□□□□ -2.61
VPS50-216ENST00000484954 CLTCL1P53675 1640 aa-1.26□□□□□ -2.61
VPS50-216ENST00000484954 ABCA5Q8WWZ7 1642 aa-1.26□□□□□ -2.61
VPS50-216ENST00000484954 PDCD5O14737 125 aa-1.27□□□□□ -2.61
VPS50-216ENST00000484954 NDUFA1O15239 70 aa-1.27□□□□□ -2.61
VPS50-216ENST00000484954 SMCO4Q9NRQ5 59 aa-1.27□□□□□ -2.61
VPS50-216ENST00000484954 IQGAP1P46940 1657 aa-1.29□□□□□ -2.62
VPS50-216ENST00000484954 RB1CC1Q8TDY2 1594 aa-1.29□□□□□ -2.62
VPS50-216ENST00000484954 DEFB124Q8NES8 71 aa-1.29□□□□□ -2.62
VPS50-216ENST00000484954 EFCAB5A4FU69 1503 aa-1.3□□□□□ -2.62
VPS50-216ENST00000484954 ABCA10Q8WWZ4 1543 aa-1.3□□□□□ -2.62
VPS50-216ENST00000484954 A0A087WWC5 75 aa-1.31□□□□□ -2.62
VPS50-216ENST00000484954 ADCY10Q96PN6 1610 aa-1.31□□□□□ -2.62
VPS50-216ENST00000484954 DUOX1Q9NRD9 1551 aa-1.34□□□□□ -2.62
VPS50-216ENST00000484954 FANCD2Q9BXW9 1451 aa-1.34□□□□□ -2.62
VPS50-216ENST00000484954 RPL39P62891 51 aaKnown RBP-1.35□□□□□ -2.63
VPS50-216ENST00000484954 CMC2Q9NRP2 79 aa-1.35□□□□□ -2.63
VPS50-216ENST00000484954 ABCC8Q09428 1581 aa-1.35□□□□□ -2.63
VPS50-216ENST00000484954 LINC01556Q5JQF7 62 aa-1.36□□□□□ -2.63
VPS50-216ENST00000484954 SMIM5Q71RC9 77 aa-1.37□□□□□ -2.63
VPS50-216ENST00000484954 SAMD9LQ8IVG5 1584 aa-1.38□□□□□ -2.63
VPS50-216ENST00000484954 TOP2AP11388 1531 aaKnown RBP-1.39□□□□□ -2.63
VPS50-216ENST00000484954 RPL39LQ96EH5 51 aaKnown RBP-1.4□□□□□ -2.63
VPS50-216ENST00000484954 ERICH3Q5RHP9 1530 aa-1.4□□□□□ -2.63
VPS50-216ENST00000484954 H3BUX3 64 aa-1.44□□□□□ -2.64
VPS50-216ENST00000484954 ATP7AQ04656 1500 aa-1.45□□□□□ -2.64
VPS50-216ENST00000484954 MROH2BQ7Z745 1585 aa-1.49□□□□□ -2.65
VPS50-216ENST00000484954 APELAP0DMC3 54 aa-1.49□□□□□ -2.65
VPS50-216ENST00000484954 A0A096LPF7 62 aa-1.5□□□□□ -2.65
VPS50-216ENST00000484954 K7EIM0 57 aa-1.51□□□□□ -2.65
VPS50-216ENST00000484954 SNRPGP15A8MWD9 76 aa-1.52□□□□□ -2.65
VPS50-216ENST00000484954 SMIM31A0A1B0GVY4 71 aa-1.55□□□□□ -2.66
VPS50-216ENST00000484954 HTN3P15516 51 aa-1.57□□□□□ -2.66
VPS50-216ENST00000484954 IQGAP2Q13576 1575 aa-1.57□□□□□ -2.66
VPS50-216ENST00000484954 PRCDQ00LT1 54 aa-1.58□□□□□ -2.66
VPS50-216ENST00000484954 ARHGAP5-AS1Q96IT6 56 aa-1.58□□□□□ -2.66
VPS50-216ENST00000484954 TOMM5Q8N4H5 51 aa-1.59□□□□□ -2.66
VPS50-216ENST00000484954 TMEM167AQ8TBQ9 72 aa-1.6□□□□□ -2.67
VPS50-216ENST00000484954 Q9Y3F1 56 aa-1.68□□□□□ -2.68
VPS50-216ENST00000484954 H3BSH0 61 aa-1.69□□□□□ -2.68
VPS50-216ENST00000484954 SNRPGP62308 76 aaKnown RBP-1.69□□□□□ -2.68
VPS50-216ENST00000484954 RPL39P5Q59GN2 51 aa-1.69□□□□□ -2.68
VPS50-216ENST00000484954 DEFB108AA8MXU0 73 aa-1.71□□□□□ -2.68
VPS50-216ENST00000484954 STATHP02808 62 aa-1.75□□□□□ -2.69
VPS50-216ENST00000484954 COX14Q96I36 57 aa-1.75□□□□□ -2.69
VPS50-216ENST00000484954 GCC2Q8IWJ2 1684 aa-1.77□□□□□ -2.69
VPS50-216ENST00000484954 DEFB108BQ8NET1 73 aa-1.82□□□□□ -2.7
Retrieved 78 of 20,778 RNA–protein pairs in 12.8 ms