RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ATP6V1DQ9Y5K8 247 aa-2.92□□□□□ -2.88
RNU6-540P-201ENST00000384622 MORN2Q502X0 79 aa-2.93□□□□□ -2.88
RNU6-540P-201ENST00000384622 LZICQ8WZA0 190 aa-2.93□□□□□ -2.88
RNU6-540P-201ENST00000384622 TCEAL7Q9BRU2 100 aa-2.93□□□□□ -2.88
RNU6-540P-201ENST00000384622 CENPXA8MT69 81 aa-2.94□□□□□ -2.88
RNU6-540P-201ENST00000384622 GNG5P63218 68 aa-2.94□□□□□ -2.88
RNU6-540P-201ENST00000384622 LSM5Q9Y4Y9 91 aaKnown RBP-2.94□□□□□ -2.88
RNU6-540P-201ENST00000384622 FANCD2Q9BXW9 1451 aa-2.95□□□□□ -2.88
RNU6-540P-201ENST00000384622 COL5A1-AS1Q5SY13 56 aa-2.95□□□□□ -2.88
RNU6-540P-201ENST00000384622 COMMD8Q9NX08 183 aa-2.95□□□□□ -2.88
RNU6-540P-201ENST00000384622 LINC01549A6NIU2 74 aa-2.96□□□□□ -2.88
RNU6-540P-201ENST00000384622 GNG3P63215 75 aa-2.96□□□□□ -2.88
RNU6-540P-201ENST00000384622 SIKE1Q9BRV8 207 aa-2.96□□□□□ -2.88
RNU6-540P-201ENST00000384622 PCP4L1A6NKN8 68 aa-2.97□□□□□ -2.88
RNU6-540P-201ENST00000384622 APOC2P02655 101 aa-2.97□□□□□ -2.88
RNU6-540P-201ENST00000384622 ATP6V1E1P36543 226 aa-2.97□□□□□ -2.88
RNU6-540P-201ENST00000384622 ARPC4P59998 168 aa-2.97□□□□□ -2.88
RNU6-540P-201ENST00000384622 SNRPGP62308 76 aaKnown RBP-2.97□□□□□ -2.88
RNU6-540P-201ENST00000384622 LIN52Q52LA3 116 aa-2.97□□□□□ -2.88
RNU6-540P-201ENST00000384622 FAUP35544 74 aaKnown RBP-2.98□□□□□ -2.89
RNU6-540P-201ENST00000384622 GNGT2O14610 69 aa-2.99□□□□□ -2.89
RNU6-540P-201ENST00000384622 TRIQKQ629K1 86 aa-2.99□□□□□ -2.89
RNU6-540P-201ENST00000384622 SMIM5Q71RC9 77 aa-2.99□□□□□ -2.89
RNU6-540P-201ENST00000384622 CCDC167Q9P0B6 97 aa-2.99□□□□□ -2.89
RNU6-540P-201ENST00000384622 GNG13Q9P2W3 67 aa-2.99□□□□□ -2.89
RNU6-540P-201ENST00000384622 DR1Q01658 176 aa-3□□□□□ -2.89
RNU6-540P-201ENST00000384622 LINC00643Q86TS7 51 aa-3□□□□□ -2.89
RNU6-540P-201ENST00000384622 SMCO4Q9NRQ5 59 aa-3.01□□□□□ -2.89
RNU6-540P-201ENST00000384622 SNRPFP62306 86 aaKnown RBP-3.02□□□□□ -2.89
RNU6-540P-201ENST00000384622 RWDD1Q9H446 243 aaPredicted RBP-3.02□□□□□ -2.89
RNU6-540P-201ENST00000384622 J3QR89 54 aa-3.03□□□□□ -2.89
RNU6-540P-201ENST00000384622 K7ERU9 68 aa-3.04□□□□□ -2.9
RNU6-540P-201ENST00000384622 SVBPQ8N300 66 aa-3.05□□□□□ -2.9
RNU6-540P-201ENST00000384622 E5RI56 91 aa-3.07□□□□□ -2.9
RNU6-540P-201ENST00000384622 ATP5IP56385 69 aaPredicted RBP-3.08□□□□□ -2.9
RNU6-540P-201ENST00000384622 S100A16Q96FQ6 103 aaKnown RBP-3.08□□□□□ -2.9
RNU6-540P-201ENST00000384622 KANTRA0A1W2PQU2 76 aa-3.1□□□□□ -2.91
RNU6-540P-201ENST00000384622 DLEU1O43261 78 aa-3.1□□□□□ -2.91
RNU6-540P-201ENST00000384622 PET100P0DJ07 73 aa-3.1□□□□□ -2.91
RNU6-540P-201ENST00000384622 S100A13Q99584 98 aa-3.1□□□□□ -2.91
RNU6-540P-201ENST00000384622 AIF1LQ9BQI0 150 aa-3.1□□□□□ -2.91
RNU6-540P-201ENST00000384622 C9orf16Q9BUW7 83 aa-3.1□□□□□ -2.91
RNU6-540P-201ENST00000384622 GNG4P50150 75 aa-3.11□□□□□ -2.91
RNU6-540P-201ENST00000384622 SMIM3Q9BZL3 60 aa-3.12□□□□□ -2.91
RNU6-540P-201ENST00000384622 PPP3R1P63098 170 aa-3.13□□□□□ -2.91
RNU6-540P-201ENST00000384622 FAM25AB3EWG3 89 aa-3.14□□□□□ -2.91
RNU6-540P-201ENST00000384622 FAM25CB3EWG5 89 aa-3.14□□□□□ -2.91
RNU6-540P-201ENST00000384622 FAM25GB3EWG6 89 aa-3.14□□□□□ -2.91
RNU6-540P-201ENST00000384622 SPA17Q15506 151 aa-3.14□□□□□ -2.91
RNU6-540P-201ENST00000384622 CHMP6Q96FZ7 201 aa-3.14□□□□□ -2.91
RNU6-540P-201ENST00000384622 CMC2Q9NRP2 79 aa-3.14□□□□□ -2.91
RNU6-540P-201ENST00000384622 V9GYS6 101 aa-3.16□□□□□ -2.92
RNU6-540P-201ENST00000384622 HSBP1L1C9JCN9 74 aa-3.17□□□□□ -2.92
RNU6-540P-201ENST00000384622 TPM2P07951 284 aa-3.18□□□□□ -2.92
RNU6-540P-201ENST00000384622 AKAIN1P0CW23 69 aa-3.18□□□□□ -2.92
RNU6-540P-201ENST00000384622 C18orf32Q8TCD1 76 aa-3.22□□□□□ -2.92
RNU6-540P-201ENST00000384622 GTF2H5Q6ZYL4 71 aa-3.23□□□□□ -2.93
RNU6-540P-201ENST00000384622 TPM1P09493 284 aa-3.25□□□□□ -2.93
RNU6-540P-201ENST00000384622 C14orf144Q96I85 54 aa-3.25□□□□□ -2.93
RNU6-540P-201ENST00000384622 GNG2P59768 71 aa-3.26□□□□□ -2.93
RNU6-540P-201ENST00000384622 ADIRFQ15847 76 aa-3.26□□□□□ -2.93
RNU6-540P-201ENST00000384622 PYY3Q5JQD4 70 aa-3.28□□□□□ -2.93
RNU6-540P-201ENST00000384622 LINC00523Q86TU6 105 aa-3.28□□□□□ -2.93
RNU6-540P-201ENST00000384622 Q9H521 79 aa-3.29□□□□□ -2.94
RNU6-540P-201ENST00000384622 M0R143 59 aa-3.31□□□□□ -2.94
RNU6-540P-201ENST00000384622 GNG8Q9UK08 70 aa-3.31□□□□□ -2.94
RNU6-540P-201ENST00000384622 GNG14A0A1W2PPG7 69 aa-3.32□□□□□ -2.94
RNU6-540P-201ENST00000384622 EFCAB10A6NFE3 127 aa-3.32□□□□□ -2.94
RNU6-540P-201ENST00000384622 PTMAP06454 111 aaKnown RBP-3.36□□□□□ -2.95
RNU6-540P-201ENST00000384622 TPM3P06753 285 aa-3.37□□□□□ -2.95
RNU6-540P-201ENST00000384622 STMN1P16949 149 aa-3.38□□□□□ -2.95
RNU6-540P-201ENST00000384622 HOPXQ9BPY8 73 aaPredicted RBP-3.38□□□□□ -2.95
RNU6-540P-201ENST00000384622 SMIM31A0A1B0GVY4 71 aa-3.46□□□□□ -2.96
RNU6-540P-201ENST00000384622 A0A1B0GV90 55 aa-3.48□□□□□ -2.97
RNU6-540P-201ENST00000384622 TOMM5Q8N4H5 51 aa-3.56□□□□□ -2.98
RNU6-540P-201ENST00000384622 LOC105371267A0A1B0GV96 52 aa-3.99□□□□□ -3.05
RNU6-540P-201ENST00000384622 PTMSP20962 102 aa-4.29□□□□□ -3.1
Retrieved 77 of 20,778 RNA–protein pairs in 8.6 ms