RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 KRTAP10-5P60370 271 aa5.06□□□□□ -1.6
RTN3-204ENST00000354497 SPRR2EP22531 72 aa5.03□□□□□ -1.6
RTN3-204ENST00000354497 SPRR2BP35325 72 aa5.03□□□□□ -1.6
RTN3-204ENST00000354497 SPRR2AP35326 72 aa5.03□□□□□ -1.6
RTN3-204ENST00000354497 S4R3F8 94 aa5.03□□□□□ -1.6
RTN3-204ENST00000354497 PRO2289Q9P1D8 64 aa5.02□□□□□ -1.61
RTN3-204ENST00000354497 KRTAP19-8Q3LI54 63 aa4.98□□□□□ -1.61
RTN3-204ENST00000354497 LCE1AQ5T7P2 110 aa4.98□□□□□ -1.61
RTN3-204ENST00000354497 SPRR2FQ96RM1 72 aa4.98□□□□□ -1.61
RTN3-204ENST00000354497 KRTAP2-2Q9BYT5 123 aa4.98□□□□□ -1.61
RTN3-204ENST00000354497 KRTAP2-1Q9BYU5 128 aa4.98□□□□□ -1.61
RTN3-204ENST00000354497 KRTAP13-4Q3LI77 160 aa4.94□□□□□ -1.62
RTN3-204ENST00000354497 SPRR2GQ9BYE4 73 aa4.94□□□□□ -1.62
RTN3-204ENST00000354497 KRTAP12-1P59990 96 aa4.89□□□□□ -1.63
RTN3-204ENST00000354497 PP632Q6XCG6 107 aa4.89□□□□□ -1.63
RTN3-204ENST00000354497 GPR98Q8WXG9 6306 aa4.87□□□□□ -1.63
RTN3-204ENST00000354497 SPRR2DP22532 72 aa4.87□□□□□ -1.63
RTN3-204ENST00000354497 INE1O15225 51 aa4.86□□□□□ -1.63
RTN3-204ENST00000354497 KRTAP12-2P59991 146 aa4.86□□□□□ -1.63
RTN3-204ENST00000354497 M0QZ58 72 aa4.85□□□□□ -1.63
RTN3-204ENST00000354497 A0A0D9SG42 100 aa4.83□□□□□ -1.64
RTN3-204ENST00000354497 KRTAP8-1Q8IUC2 63 aa4.82□□□□□ -1.64
RTN3-204ENST00000354497 SPRR5A0A1B0GTR4 108 aa4.79□□□□□ -1.64
RTN3-204ENST00000354497 MT1XP80297 61 aa4.66□□□□□ -1.66
RTN3-204ENST00000354497 R4GN34 69 aa4.63□□□□□ -1.67
RTN3-204ENST00000354497 DSTQ03001 7570 aaKnown RBP4.55□□□□□ -1.68
RTN3-204ENST00000354497 KRTAP10-7P60409 375 aaPredicted RBP4.47□□□□□ -1.69
RTN3-204ENST00000354497 MT3P25713 68 aa4.45□□□□□ -1.7
RTN3-204ENST00000354497 KRTAP10-12P60413 245 aa4.41□□□□□ -1.7
RTN3-204ENST00000354497 HMCN1Q96RW7 5635 aa4.41□□□□□ -1.7
RTN3-204ENST00000354497 AHNAK2Q8IVF2 5795 aa4.36□□□□□ -1.71
RTN3-204ENST00000354497 MT4P47944 62 aa4.31□□□□□ -1.72
RTN3-204ENST00000354497 TNP1P09430 55 aa4.28□□□□□ -1.72
RTN3-204ENST00000354497 KRTAP5-10Q6L8G5 202 aa4.24□□□□□ -1.73
RTN3-204ENST00000354497 KRTAP5-11Q6L8G4 156 aa4.22□□□□□ -1.73
RTN3-204ENST00000354497 KRTAP19-3Q7Z4W3 81 aa4.22□□□□□ -1.73
RTN3-204ENST00000354497 LCE1EQ5T753 118 aa4.21□□□□□ -1.73
RTN3-204ENST00000354497 MT1EP04732 61 aa4.17□□□□□ -1.74
RTN3-204ENST00000354497 KRTAP19-7Q3SYF9 63 aa4.16□□□□□ -1.74
RTN3-204ENST00000354497 KRTAP5-7Q6L8G8 165 aa4.13□□□□□ -1.75
RTN3-204ENST00000354497 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.11□□□□□ -1.75
RTN3-204ENST00000354497 MT1GP13640 62 aa4.05□□□□□ -1.76
RTN3-204ENST00000354497 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
RTN3-204ENST00000354497 KRTAP5-4Q6L8H1 288 aa4.02□□□□□ -1.77
RTN3-204ENST00000354497 MT1MQ8N339 61 aa4.01□□□□□ -1.77
RTN3-204ENST00000354497 KRTAP19-5Q3LI72 72 aa3.99□□□□□ -1.77
RTN3-204ENST00000354497 KRTAP4-3Q9BYR4 195 aa3.97□□□□□ -1.77
RTN3-204ENST00000354497 MT1LQ93083 61 aa3.91□□□□□ -1.78
RTN3-204ENST00000354497 KRTAP20-2Q3LI61 65 aa3.87□□□□□ -1.79
RTN3-204ENST00000354497 LCE3CQ5T5A8 94 aa3.8□□□□□ -1.8
RTN3-204ENST00000354497 LCE3AQ5TA76 89 aa3.78□□□□□ -1.8
RTN3-204ENST00000354497 KRTAP9-6A8MVA2 160 aa3.76□□□□□ -1.81
RTN3-204ENST00000354497 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
RTN3-204ENST00000354497 AHNAKQ09666 5890 aaKnown RBP3.73□□□□□ -1.81
RTN3-204ENST00000354497 KRTAP5-5Q701N2 237 aaPredicted RBP3.67□□□□□ -1.82
RTN3-204ENST00000354497 MUC5ACP98088 5654 aa3.66□□□□□ -1.82
RTN3-204ENST00000354497 MUC5BQ9HC84 5762 aaPredicted RBP3.65□□□□□ -1.82
RTN3-204ENST00000354497 KRTAP12-3P60328 96 aa3.65□□□□□ -1.83
RTN3-204ENST00000354497 SYNE1Q8NF91 8797 aaKnown RBP3.61□□□□□ -1.83
RTN3-204ENST00000354497 KRTAP5-1Q6L8H4 278 aa3.6□□□□□ -1.83
RTN3-204ENST00000354497 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
RTN3-204ENST00000354497 LCE3EQ5T5B0 92 aa3.46□□□□□ -1.86
RTN3-204ENST00000354497 KRTAP5-2Q701N4 177 aa3.44□□□□□ -1.86
RTN3-204ENST00000354497 KRTAP4-4Q9BYR3 166 aa3.42□□□□□ -1.86
RTN3-204ENST00000354497 KRTAP6-1Q3LI64 71 aa3.34□□□□□ -1.88
RTN3-204ENST00000354497 OBSCNQ5VST9 7968 aa3.33□□□□□ -1.88
RTN3-204ENST00000354497 MT1AP04731 61 aa3.32□□□□□ -1.88
RTN3-204ENST00000354497 KRTAP6-2Q3LI66 62 aa3.28□□□□□ -1.88
RTN3-204ENST00000354497 PRM1P04553 51 aa2.9□□□□□ -1.95
RTN3-204ENST00000354497 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
RTN3-204ENST00000354497 LCE3DQ9BYE3 92 aa2.82□□□□□ -1.96
RTN3-204ENST00000354497 LCE1CQ5T751 118 aa2.77□□□□□ -1.97
RTN3-204ENST00000354497 PHGR1C9JFL3 82 aa2.55□□□□□ -2
RTN3-204ENST00000354497 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
RTN3-204ENST00000354497 KRTAP21-2Q3LI59 83 aa2.17□□□□□ -2.06
RTN3-204ENST00000354497 KRTAP21-1Q3LI58 79 aa2.09□□□□□ -2.07
RTN3-204ENST00000354497 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 143.8 ms