RNA–Protein interactions for RNA: ENST00000638680.1

SCARB2-213, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 5,817 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-213ENST00000638680 KRTAP4-5Q9BYR2 181 aa7.9□□□□□ -1.15
SCARB2-213ENST00000638680 ALMS1Q8TCU4 4167 aa7.8□□□□□ -1.16
SCARB2-213ENST00000638680 CSMD3Q7Z407 3707 aa7.66□□□□□ -1.18
SCARB2-213ENST00000638680 DNAH9Q9NYC9 4486 aa7.56□□□□□ -1.2
SCARB2-213ENST00000638680 KRTAP10-5P60370 271 aa7.54□□□□□ -1.2
SCARB2-213ENST00000638680 DNAH1Q9P2D7 4330 aa7.54□□□□□ -1.2
SCARB2-213ENST00000638680 DNAH5Q8TE73 4624 aa7.52□□□□□ -1.21
SCARB2-213ENST00000638680 DNAH10Q8IVF4 4471 aa7.5□□□□□ -1.21
SCARB2-213ENST00000638680 AKAP9Q99996 3911 aa7.5□□□□□ -1.21
SCARB2-213ENST00000638680 ZNF469Q96JG9 3925 aaPredicted RBP7.46□□□□□ -1.21
SCARB2-213ENST00000638680 DNAH2Q9P225 4427 aa7.41□□□□□ -1.22
SCARB2-213ENST00000638680 DNAH11Q96DT5 4516 aa7.41□□□□□ -1.22
SCARB2-213ENST00000638680 KRTAP4-1Q9BYQ7 146 aa7.4□□□□□ -1.22
SCARB2-213ENST00000638680 KRTAP8-1Q8IUC2 63 aa7.39□□□□□ -1.23
SCARB2-213ENST00000638680 PLECQ15149 4684 aaKnown RBP7.36□□□□□ -1.23
SCARB2-213ENST00000638680 DNAH17Q9UFH2 4485 aa7.32□□□□□ -1.24
SCARB2-213ENST00000638680 MT1HP80294 61 aa7.24□□□□□ -1.25
SCARB2-213ENST00000638680 VPS13DQ5THJ4 4388 aa7.22□□□□□ -1.25
SCARB2-213ENST00000638680 DNAH8Q96JB1 4490 aa7.21□□□□□ -1.26
SCARB2-213ENST00000638680 SPRR2GQ9BYE4 73 aa7.2□□□□□ -1.26
SCARB2-213ENST00000638680 MT2AP02795 61 aa7.18□□□□□ -1.26
SCARB2-213ENST00000638680 DNAH3Q8TD57 4116 aa7.14□□□□□ -1.27
SCARB2-213ENST00000638680 FAT1Q14517 4588 aa7.11□□□□□ -1.27
SCARB2-213ENST00000638680 KRTAP19-5Q3LI72 72 aa7.09□□□□□ -1.27
SCARB2-213ENST00000638680 SACSQ9NZJ4 4579 aa7.07□□□□□ -1.28
SCARB2-213ENST00000638680 DYNC1H1Q14204 4646 aaKnown RBP7.07□□□□□ -1.28
SCARB2-213ENST00000638680 LRP1BQ9NZR2 4599 aa7.06□□□□□ -1.28
SCARB2-213ENST00000638680 MT1FP04733 61 aa7.04□□□□□ -1.28
SCARB2-213ENST00000638680 LCE3CQ5T5A8 94 aa7.03□□□□□ -1.28
SCARB2-213ENST00000638680 DYNC2H1Q8NCM8 4307 aaKnown RBP6.98□□□□□ -1.29
SCARB2-213ENST00000638680 ANK2Q01484 3957 aa6.98□□□□□ -1.29
SCARB2-213ENST00000638680 FAT2Q9NYQ8 4349 aa6.97□□□□□ -1.29
SCARB2-213ENST00000638680 STARD9Q9P2P6 4700 aa6.97□□□□□ -1.29
SCARB2-213ENST00000638680 DNHD1Q96M86 4753 aa6.89□□□□□ -1.31
SCARB2-213ENST00000638680 APOBP04114 4563 aaKnown RBP6.86□□□□□ -1.31
SCARB2-213ENST00000638680 KRTAP10-7P60409 375 aaPredicted RBP6.82□□□□□ -1.32
SCARB2-213ENST00000638680 SPRR2FQ96RM1 72 aa6.82□□□□□ -1.32
SCARB2-213ENST00000638680 RYR1P21817 5038 aa6.79□□□□□ -1.32
SCARB2-213ENST00000638680 VPS13BQ7Z7G8 4022 aa6.79□□□□□ -1.32
SCARB2-213ENST00000638680 KMT2AQ03164 3969 aa6.78□□□□□ -1.32
SCARB2-213ENST00000638680 FRAS1Q86XX4 4008 aa6.7□□□□□ -1.34
SCARB2-213ENST00000638680 PRKDCP78527 4128 aaKnown RBP6.7□□□□□ -1.34
SCARB2-213ENST00000638680 KRTAP19-4Q3LI73 84 aa6.66□□□□□ -1.34
SCARB2-213ENST00000638680 KRTAP19-1Q8IUB9 90 aa6.66□□□□□ -1.34
SCARB2-213ENST00000638680 CMYA5Q8N3K9 4069 aa6.65□□□□□ -1.35
SCARB2-213ENST00000638680 DNAH7Q8WXX0 4024 aa6.62□□□□□ -1.35
SCARB2-213ENST00000638680 KRTAP19-8Q3LI54 63 aa6.62□□□□□ -1.35
SCARB2-213ENST00000638680 DNAH6Q9C0G6 4158 aa6.59□□□□□ -1.35
SCARB2-213ENST00000638680 LYSTQ99698 3801 aa6.58□□□□□ -1.36
SCARB2-213ENST00000638680 MT1XP80297 61 aa6.56□□□□□ -1.36
SCARB2-213ENST00000638680 LCE3BQ5TA77 95 aa6.53□□□□□ -1.36
SCARB2-213ENST00000638680 MYCBP2O75592 4640 aa6.52□□□□□ -1.37
SCARB2-213ENST00000638680 FAT3Q8TDW7 4589 aa6.52□□□□□ -1.37
SCARB2-213ENST00000638680 RYR3Q15413 4870 aa6.5□□□□□ -1.37
SCARB2-213ENST00000638680 KRTAP17-1Q9BYP8 105 aa6.49□□□□□ -1.37
SCARB2-213ENST00000638680 SPRR5A0A1B0GTR4 108 aa6.48□□□□□ -1.37
SCARB2-213ENST00000638680 KRTAP12-4P60329 112 aa6.47□□□□□ -1.37
SCARB2-213ENST00000638680 HECTD4Q9Y4D8 3996 aa6.45□□□□□ -1.38
SCARB2-213ENST00000638680 MT1GP13640 62 aa6.45□□□□□ -1.38
SCARB2-213ENST00000638680 LRP1Q07954 4544 aaKnown RBP6.43□□□□□ -1.38
SCARB2-213ENST00000638680 MT1BP07438 61 aa6.43□□□□□ -1.38
SCARB2-213ENST00000638680 SPRR2EP22531 72 aa6.34□□□□□ -1.39
SCARB2-213ENST00000638680 SPRR2BP35325 72 aa6.34□□□□□ -1.39
SCARB2-213ENST00000638680 SPRR2AP35326 72 aa6.34□□□□□ -1.39
SCARB2-213ENST00000638680 KRTAP4-8A0A0G2JLE6 195 aa6.33□□□□□ -1.4
SCARB2-213ENST00000638680 KRTAP4-8Q9BYQ9 185 aa6.33□□□□□ -1.4
SCARB2-213ENST00000638680 KRTAP9-8Q9BYQ0 159 aa6.31□□□□□ -1.4
SCARB2-213ENST00000638680 RYR2Q92736 4967 aa6.25□□□□□ -1.41
SCARB2-213ENST00000638680 KIAA1109Q2LD37 5005 aa6.2□□□□□ -1.42
SCARB2-213ENST00000638680 HERC1Q15751 4861 aa6.17□□□□□ -1.42
SCARB2-213ENST00000638680 LCE3DQ9BYE3 92 aa6.17□□□□□ -1.42
SCARB2-213ENST00000638680 KRTAP9-3Q9BYQ3 159 aa6.17□□□□□ -1.42
SCARB2-213ENST00000638680 HSPG2P98160 4391 aa6.15□□□□□ -1.42
SCARB2-213ENST00000638680 LCE2CQ5TA81 110 aa6.15□□□□□ -1.42
SCARB2-213ENST00000638680 SPRR2DP22532 72 aa6.12□□□□□ -1.43
SCARB2-213ENST00000638680 LCE2BO14633 110 aa6.12□□□□□ -1.43
SCARB2-213ENST00000638680 PKD1P98161 4303 aa6.09□□□□□ -1.43
SCARB2-213ENST00000638680 HYDINQ4G0P3 5121 aa6.08□□□□□ -1.44
SCARB2-213ENST00000638680 LCE3EQ5T5B0 92 aa6.07□□□□□ -1.44
SCARB2-213ENST00000638680 KRTAP4-7Q9BYR0 210 aa6.07□□□□□ -1.44
SCARB2-213ENST00000638680 LRP2P98164 4655 aa6.02□□□□□ -1.45
SCARB2-213ENST00000638680 LPAP08519 4548 aa6.01□□□□□ -1.45
SCARB2-213ENST00000638680 MT1LQ93083 61 aa5.97□□□□□ -1.45
SCARB2-213ENST00000638680 PKHD1P08F94 4074 aa5.97□□□□□ -1.45
SCARB2-213ENST00000638680 KRTAP19-3Q7Z4W3 81 aa5.94□□□□□ -1.46
SCARB2-213ENST00000638680 PKHD1L1Q86WI1 4243 aa5.92□□□□□ -1.46
SCARB2-213ENST00000638680 HERC2O95714 4834 aa5.89□□□□□ -1.47
SCARB2-213ENST00000638680 MT1EP04732 61 aa5.89□□□□□ -1.47
SCARB2-213ENST00000638680 TNXBP22105 4242 aa5.84□□□□□ -1.47
SCARB2-213ENST00000638680 KRTAP19-2Q3LHN2 52 aa5.83□□□□□ -1.48
SCARB2-213ENST00000638680 KMT2CQ8NEZ4 4911 aaKnown RBP5.79□□□□□ -1.48
SCARB2-213ENST00000638680 PCLOQ9Y6V0 5065 aa5.75□□□□□ -1.49
SCARB2-213ENST00000638680 PRM1P04553 51 aa5.73□□□□□ -1.49
SCARB2-213ENST00000638680 LOC100996750A0A140TA64 210 aa5.73□□□□□ -1.49
SCARB2-213ENST00000638680 FLGP20930 4061 aaPredicted RBP5.73□□□□□ -1.49
SCARB2-213ENST00000638680 BIRC6Q9NR09 4857 aa5.72□□□□□ -1.49
SCARB2-213ENST00000638680 MT1MQ8N339 61 aa5.7□□□□□ -1.5
SCARB2-213ENST00000638680 MUC17Q685J3 4493 aa5.7□□□□□ -1.5
SCARB2-213ENST00000638680 KRTAP4-3Q9BYR4 195 aa5.63□□□□□ -1.51
SCARB2-213ENST00000638680 MT3P25713 68 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms