RNA–Protein interactions for RNA: ENST00000637927.1

CACNA1A-253, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 6,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-253ENST00000637927 FBN3Q75N90 2809 aa7.34□□□□□ -1.24
CACNA1A-253ENST00000637927 COL7A1Q02388 2944 aa7.33□□□□□ -1.24
CACNA1A-253ENST00000637927 KRTAP3-2Q9BYR7 98 aa7.29□□□□□ -1.24
CACNA1A-253ENST00000637927 ZNF469Q96JG9 3925 aaPredicted RBP7.22□□□□□ -1.25
CACNA1A-253ENST00000637927 KRTAP10-4P60372 401 aaPredicted RBP7.08□□□□□ -1.28
CACNA1A-253ENST00000637927 SPRR2FQ96RM1 72 aa7.04□□□□□ -1.28
CACNA1A-253ENST00000637927 DNAH9Q9NYC9 4486 aa6.99□□□□□ -1.29
CACNA1A-253ENST00000637927 DNAH1Q9P2D7 4330 aa6.96□□□□□ -1.3
CACNA1A-253ENST00000637927 KRTAP10-7P60409 375 aaPredicted RBP6.95□□□□□ -1.3
CACNA1A-253ENST00000637927 DNAH10Q8IVF4 4471 aa6.87□□□□□ -1.31
CACNA1A-253ENST00000637927 FRAS1Q86XX4 4008 aa6.85□□□□□ -1.31
CACNA1A-253ENST00000637927 DNAH2Q9P225 4427 aa6.85□□□□□ -1.31
CACNA1A-253ENST00000637927 KRTAP4-1Q9BYQ7 146 aa6.82□□□□□ -1.32
CACNA1A-253ENST00000637927 DNAH3Q8TD57 4116 aa6.8□□□□□ -1.32
CACNA1A-253ENST00000637927 ANK2Q01484 3957 aa6.78□□□□□ -1.32
CACNA1A-253ENST00000637927 MT1HP80294 61 aa6.76□□□□□ -1.33
CACNA1A-253ENST00000637927 SPRR2EP22531 72 aa6.72□□□□□ -1.33
CACNA1A-253ENST00000637927 SPRR2BP35325 72 aa6.72□□□□□ -1.33
CACNA1A-253ENST00000637927 SPRR2AP35326 72 aa6.72□□□□□ -1.33
CACNA1A-253ENST00000637927 LCE3BQ5TA77 95 aa6.69□□□□□ -1.34
CACNA1A-253ENST00000637927 KMT2AQ03164 3969 aa6.68□□□□□ -1.34
CACNA1A-253ENST00000637927 KRTAP19-5Q3LI72 72 aa6.68□□□□□ -1.34
CACNA1A-253ENST00000637927 KRTAP23-1A1A580 65 aa6.62□□□□□ -1.35
CACNA1A-253ENST00000637927 FAT2Q9NYQ8 4349 aa6.6□□□□□ -1.35
CACNA1A-253ENST00000637927 DNAH8Q96JB1 4490 aa6.6□□□□□ -1.35
CACNA1A-253ENST00000637927 PLECQ15149 4684 aaKnown RBP6.58□□□□□ -1.36
CACNA1A-253ENST00000637927 VPS13BQ7Z7G8 4022 aa6.56□□□□□ -1.36
CACNA1A-253ENST00000637927 DNAH5Q8TE73 4624 aa6.55□□□□□ -1.36
CACNA1A-253ENST00000637927 MT2AP02795 61 aa6.55□□□□□ -1.36
CACNA1A-253ENST00000637927 CMYA5Q8N3K9 4069 aa6.53□□□□□ -1.36
CACNA1A-253ENST00000637927 DNAH11Q96DT5 4516 aa6.52□□□□□ -1.37
CACNA1A-253ENST00000637927 MT1FP04733 61 aa6.48□□□□□ -1.37
CACNA1A-253ENST00000637927 DNAH7Q8WXX0 4024 aa6.48□□□□□ -1.37
CACNA1A-253ENST00000637927 DNAH17Q9UFH2 4485 aa6.45□□□□□ -1.38
CACNA1A-253ENST00000637927 PRKDCP78527 4128 aaKnown RBP6.45□□□□□ -1.38
CACNA1A-253ENST00000637927 SPRR2DP22532 72 aa6.45□□□□□ -1.38
CACNA1A-253ENST00000637927 LYSTQ99698 3801 aa6.44□□□□□ -1.38
CACNA1A-253ENST00000637927 STARD9Q9P2P6 4700 aa6.42□□□□□ -1.38
CACNA1A-253ENST00000637927 VPS13DQ5THJ4 4388 aa6.4□□□□□ -1.38
CACNA1A-253ENST00000637927 DYNC2H1Q8NCM8 4307 aaKnown RBP6.38□□□□□ -1.39
CACNA1A-253ENST00000637927 LRP1BQ9NZR2 4599 aa6.38□□□□□ -1.39
CACNA1A-253ENST00000637927 MT1GP13640 62 aa6.36□□□□□ -1.39
CACNA1A-253ENST00000637927 LCE3CQ5T5A8 94 aa6.36□□□□□ -1.39
CACNA1A-253ENST00000637927 SPRR2GQ9BYE4 73 aa6.31□□□□□ -1.4
CACNA1A-253ENST00000637927 DNHD1Q96M86 4753 aa6.31□□□□□ -1.4
CACNA1A-253ENST00000637927 DNAH6Q9C0G6 4158 aa6.26□□□□□ -1.41
CACNA1A-253ENST00000637927 FAT1Q14517 4588 aa6.24□□□□□ -1.41
CACNA1A-253ENST00000637927 LCE2BO14633 110 aa6.22□□□□□ -1.41
CACNA1A-253ENST00000637927 SPRR5A0A1B0GTR4 108 aa6.21□□□□□ -1.42
CACNA1A-253ENST00000637927 SACSQ9NZJ4 4579 aa6.19□□□□□ -1.42
CACNA1A-253ENST00000637927 KRTAP12-4P60329 112 aa6.09□□□□□ -1.43
CACNA1A-253ENST00000637927 DYNC1H1Q14204 4646 aaKnown RBP6.08□□□□□ -1.44
CACNA1A-253ENST00000637927 MT4P47944 62 aa6.08□□□□□ -1.44
CACNA1A-253ENST00000637927 HECTD4Q9Y4D8 3996 aa6.08□□□□□ -1.44
CACNA1A-253ENST00000637927 APOBP04114 4563 aaKnown RBP6.01□□□□□ -1.45
CACNA1A-253ENST00000637927 KRTAP4-8A0A0G2JLE6 195 aa6.01□□□□□ -1.45
CACNA1A-253ENST00000637927 KRTAP4-8Q9BYQ9 185 aa6.01□□□□□ -1.45
CACNA1A-253ENST00000637927 KRTAP17-1Q9BYP8 105 aa6□□□□□ -1.45
CACNA1A-253ENST00000637927 LCE2CQ5TA81 110 aa5.99□□□□□ -1.45
CACNA1A-253ENST00000637927 LCE2DQ5TA82 110 aaPredicted RBP5.94□□□□□ -1.46
CACNA1A-253ENST00000637927 LPAP08519 4548 aa5.94□□□□□ -1.46
CACNA1A-253ENST00000637927 LCE3EQ5T5B0 92 aa5.88□□□□□ -1.47
CACNA1A-253ENST00000637927 FAT3Q8TDW7 4589 aa5.88□□□□□ -1.47
CACNA1A-253ENST00000637927 LCE1BQ5T7P3 118 aa5.88□□□□□ -1.47
CACNA1A-253ENST00000637927 MT1XP80297 61 aa5.86□□□□□ -1.47
CACNA1A-253ENST00000637927 RYR1P21817 5038 aa5.84□□□□□ -1.47
CACNA1A-253ENST00000637927 PKD1P98161 4303 aa5.83□□□□□ -1.48
CACNA1A-253ENST00000637927 LCE3DQ9BYE3 92 aa5.83□□□□□ -1.48
CACNA1A-253ENST00000637927 KRTAP19-1Q8IUB9 90 aa5.81□□□□□ -1.48
CACNA1A-253ENST00000637927 HSPG2P98160 4391 aa5.79□□□□□ -1.48
CACNA1A-253ENST00000637927 KRTAP4-7Q9BYR0 210 aa5.78□□□□□ -1.48
CACNA1A-253ENST00000637927 LCE1DQ5T752 114 aa5.73□□□□□ -1.49
CACNA1A-253ENST00000637927 MT1BP07438 61 aa5.7□□□□□ -1.5
CACNA1A-253ENST00000637927 KRTAP19-8Q3LI54 63 aa5.7□□□□□ -1.5
CACNA1A-253ENST00000637927 LRP1Q07954 4544 aaKnown RBP5.7□□□□□ -1.5
CACNA1A-253ENST00000637927 MYCBP2O75592 4640 aa5.69□□□□□ -1.5
CACNA1A-253ENST00000637927 PKHD1P08F94 4074 aa5.68□□□□□ -1.5
CACNA1A-253ENST00000637927 KRTAP9-8Q9BYQ0 159 aa5.68□□□□□ -1.5
CACNA1A-253ENST00000637927 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
CACNA1A-253ENST00000637927 HYDINQ4G0P3 5121 aa5.64□□□□□ -1.51
CACNA1A-253ENST00000637927 RYR3Q15413 4870 aa5.61□□□□□ -1.51
CACNA1A-253ENST00000637927 LOC100996750A0A140TA64 210 aa5.6□□□□□ -1.51
CACNA1A-253ENST00000637927 TNXBP22105 4242 aa5.58□□□□□ -1.52
CACNA1A-253ENST00000637927 PRM1P04553 51 aa5.58□□□□□ -1.52
CACNA1A-253ENST00000637927 KRTAP9-3Q9BYQ3 159 aa5.54□□□□□ -1.52
CACNA1A-253ENST00000637927 LCE5AQ5TCM9 118 aa5.51□□□□□ -1.53
CACNA1A-253ENST00000637927 KIAA1109Q2LD37 5005 aa5.49□□□□□ -1.53
CACNA1A-253ENST00000637927 RYR2Q92736 4967 aa5.46□□□□□ -1.54
CACNA1A-253ENST00000637927 KRTAP4-3Q9BYR4 195 aa5.45□□□□□ -1.54
CACNA1A-253ENST00000637927 KRTAP19-4Q3LI73 84 aa5.41□□□□□ -1.54
CACNA1A-253ENST00000637927 KRTAP19-3Q7Z4W3 81 aa5.41□□□□□ -1.54
CACNA1A-253ENST00000637927 FLGP20930 4061 aaPredicted RBP5.4□□□□□ -1.54
CACNA1A-253ENST00000637927 KMT2CQ8NEZ4 4911 aaKnown RBP5.35□□□□□ -1.55
CACNA1A-253ENST00000637927 KRTAP4-9Q9BYQ8 210 aa5.34□□□□□ -1.55
CACNA1A-253ENST00000637927 MT1LQ93083 61 aa5.31□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1CQ5T751 118 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1EQ5T753 118 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1FQ5T754 118 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1AQ5T7P2 110 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 HERC2O95714 4834 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms