RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 AKAP12Q02952 1782 aa-3.11□□□□□ -2.91
SCN1A-211ENST00000635893 UQCRHLA0A096LP55 91 aa-3.12□□□□□ -2.91
SCN1A-211ENST00000635893 PMCHL2Q9BQD1 86 aa-3.12□□□□□ -2.91
SCN1A-211ENST00000635893 RALGAPBQ86X10 1494 aa-3.12□□□□□ -2.91
SCN1A-211ENST00000635893 FAM25AB3EWG3 89 aa-3.13□□□□□ -2.91
SCN1A-211ENST00000635893 FAM25CB3EWG5 89 aa-3.13□□□□□ -2.91
SCN1A-211ENST00000635893 FAM25GB3EWG6 89 aa-3.13□□□□□ -2.91
SCN1A-211ENST00000635893 GNGT2O14610 69 aa-3.14□□□□□ -2.91
SCN1A-211ENST00000635893 SELENOWP63302 87 aa-3.14□□□□□ -2.91
SCN1A-211ENST00000635893 SVBPQ8N300 66 aa-3.14□□□□□ -2.91
SCN1A-211ENST00000635893 IER3IP1Q9Y5U9 82 aa-3.15□□□□□ -2.91
SCN1A-211ENST00000635893 ABCC6O95255 1503 aa-3.15□□□□□ -2.91
SCN1A-211ENST00000635893 TIAM1Q13009 1591 aa-3.16□□□□□ -2.91
SCN1A-211ENST00000635893 NRKQ7Z2Y5 1582 aa-3.16□□□□□ -2.91
SCN1A-211ENST00000635893 MYMXA0A1B0GTQ4 84 aa-3.16□□□□□ -2.92
SCN1A-211ENST00000635893 C2orf88Q9BSF0 95 aa-3.16□□□□□ -2.92
SCN1A-211ENST00000635893 RABAC1Q9UI14 185 aa-3.16□□□□□ -2.92
SCN1A-211ENST00000635893 MROH2AA6NES4 1674 aa-3.17□□□□□ -2.92
SCN1A-211ENST00000635893 MYO3AQ8NEV4 1616 aa-3.17□□□□□ -2.92
SCN1A-211ENST00000635893 PYDC1Q8WXC3 89 aa-3.17□□□□□ -2.92
SCN1A-211ENST00000635893 PZPP20742 1482 aa-3.17□□□□□ -2.92
SCN1A-211ENST00000635893 VPS8Q8N3P4 1428 aa-3.18□□□□□ -2.92
SCN1A-211ENST00000635893 AKAIN1P0CW23 69 aa-3.18□□□□□ -2.92
SCN1A-211ENST00000635893 HTN1P15515 57 aa-3.18□□□□□ -2.92
SCN1A-211ENST00000635893 PEA15Q15121 130 aa-3.18□□□□□ -2.92
SCN1A-211ENST00000635893 NALCNQ8IZF0 1738 aa-3.19□□□□□ -2.92
SCN1A-211ENST00000635893 CEBPZOSA8MTT3 80 aa-3.19□□□□□ -2.92
SCN1A-211ENST00000635893 SARNPP82979 210 aaKnown RBP-3.19□□□□□ -2.92
SCN1A-211ENST00000635893 COL5A1-AS1Q5SY13 56 aa-3.19□□□□□ -2.92
SCN1A-211ENST00000635893 GNG7O60262 68 aa-3.2□□□□□ -2.92
SCN1A-211ENST00000635893 S100A1P23297 94 aa-3.2□□□□□ -2.92
SCN1A-211ENST00000635893 SMIM11AP58511 58 aa-3.2□□□□□ -2.92
SCN1A-211ENST00000635893 DEFB131AP59861 70 aa-3.2□□□□□ -2.92
SCN1A-211ENST00000635893 LINC00470Q9BZP3 86 aa-3.2□□□□□ -2.92
SCN1A-211ENST00000635893 ANKARQ7Z5J8 1434 aa-3.2□□□□□ -2.92
SCN1A-211ENST00000635893 ALS2Q96Q42 1657 aa-3.2□□□□□ -2.92
SCN1A-211ENST00000635893 MADDQ8WXG6 1647 aa-3.21□□□□□ -2.92
SCN1A-211ENST00000635893 SNAPC5O75971 98 aa-3.21□□□□□ -2.92
SCN1A-211ENST00000635893 FAUP35544 74 aaKnown RBP-3.21□□□□□ -2.92
SCN1A-211ENST00000635893 RHPN1-AS1Q9BWJ2 59 aa-3.21□□□□□ -2.92
SCN1A-211ENST00000635893 GOLGB1Q14789 3259 aaKnown RBP-3.22□□□□□ -2.92
SCN1A-211ENST00000635893 ENHOQ6UWT2 76 aa-3.22□□□□□ -2.92
SCN1A-211ENST00000635893 NMES1Q9C002 83 aa-3.23□□□□□ -2.93
SCN1A-211ENST00000635893 PVALEFA0A1B0GWK0 134 aa-3.24□□□□□ -2.93
SCN1A-211ENST00000635893 DEFB114Q30KQ6 69 aa-3.24□□□□□ -2.93
SCN1A-211ENST00000635893 DEFB104AQ8WTQ1 72 aa-3.24□□□□□ -2.93
SCN1A-211ENST00000635893 LINC00308Q8TCZ7 52 aa-3.26□□□□□ -2.93
SCN1A-211ENST00000635893 KDM5DQ9BY66 1539 aa-3.27□□□□□ -2.93
SCN1A-211ENST00000635893 A0A096LNI7 61 aa-3.27□□□□□ -2.93
SCN1A-211ENST00000635893 A0A087WXM4 84 aa-3.29□□□□□ -2.94
SCN1A-211ENST00000635893 PPP3R1P63098 170 aa-3.29□□□□□ -2.94
SCN1A-211ENST00000635893 TMEM167BQ9NRX6 74 aa-3.29□□□□□ -2.94
SCN1A-211ENST00000635893 ATP5EP2Q5VTU8 51 aa-3.3□□□□□ -2.94
SCN1A-211ENST00000635893 GNG4P50150 75 aa-3.31□□□□□ -2.94
SCN1A-211ENST00000635893 LINC00643Q86TS7 51 aa-3.31□□□□□ -2.94
SCN1A-211ENST00000635893 SMIM2Q9BVW6 85 aa-3.31□□□□□ -2.94
SCN1A-211ENST00000635893 EFCAB6Q5THR3 1501 aa-3.31□□□□□ -2.94
SCN1A-211ENST00000635893 NFAT5O94916 1531 aa-3.32□□□□□ -2.94
SCN1A-211ENST00000635893 GYPAP02724 150 aa-3.32□□□□□ -2.94
SCN1A-211ENST00000635893 SMIM13P0DJ93 91 aa-3.32□□□□□ -2.94
SCN1A-211ENST00000635893 TMEM203Q969S6 136 aa-3.32□□□□□ -2.94
SCN1A-211ENST00000635893 H3BUT2 72 aa-3.33□□□□□ -2.94
SCN1A-211ENST00000635893 CEP162Q5TB80 1403 aa-3.34□□□□□ -2.94
SCN1A-211ENST00000635893 SNRPFP62306 86 aaKnown RBP-3.34□□□□□ -2.94
SCN1A-211ENST00000635893 LMTK2Q8IWU2 1503 aa-3.34□□□□□ -2.94
SCN1A-211ENST00000635893 DUOX2Q9NRD8 1548 aa-3.35□□□□□ -2.95
SCN1A-211ENST00000635893 DDX60Q8IY21 1712 aaKnown RBP-3.36□□□□□ -2.95
SCN1A-211ENST00000635893 GTF2H5Q6ZYL4 71 aa-3.37□□□□□ -2.95
SCN1A-211ENST00000635893 DLEU1O43261 78 aa-3.38□□□□□ -2.95
SCN1A-211ENST00000635893 DEFB124Q8NES8 71 aa-3.38□□□□□ -2.95
SCN1A-211ENST00000635893 TSC22D3Q99576 134 aa-3.38□□□□□ -2.95
SCN1A-211ENST00000635893 SYCP2Q9BX26 1530 aa-3.39□□□□□ -2.95
SCN1A-211ENST00000635893 LINC01590Q5TEZ4 76 aa-3.39□□□□□ -2.95
SCN1A-211ENST00000635893 RB1CC1Q8TDY2 1594 aa-3.39□□□□□ -2.95
SCN1A-211ENST00000635893 K7EMI3 77 aa-3.4□□□□□ -2.95
SCN1A-211ENST00000635893 PEG3Q9GZU2 1588 aa-3.4□□□□□ -2.95
SCN1A-211ENST00000635893 CORTO00230 105 aa-3.41□□□□□ -2.96
SCN1A-211ENST00000635893 LINC01556Q5JQF7 62 aa-3.41□□□□□ -2.96
SCN1A-211ENST00000635893 SNHG12Q9BXW3 62 aa-3.41□□□□□ -2.96
SCN1A-211ENST00000635893 DEFB121Q5J5C9 76 aa-3.43□□□□□ -2.96
SCN1A-211ENST00000635893 S100A10P60903 97 aa-3.44□□□□□ -2.96
SCN1A-211ENST00000635893 M0R1W7 72 aa-3.45□□□□□ -2.96
SCN1A-211ENST00000635893 TCEAL7Q9BRU2 100 aa-3.46□□□□□ -2.96
SCN1A-211ENST00000635893 AGLP35573 1532 aa-3.47□□□□□ -2.96
SCN1A-211ENST00000635893 NDUFA2O43678 99 aa-3.47□□□□□ -2.96
SCN1A-211ENST00000635893 NCMAPQ5T1S8 102 aa-3.47□□□□□ -2.96
SCN1A-211ENST00000635893 H3BVH4 76 aa-3.48□□□□□ -2.97
SCN1A-211ENST00000635893 TFF3Q07654 80 aa-3.48□□□□□ -2.97
SCN1A-211ENST00000635893 TOMM7Q9P0U1 55 aa-3.48□□□□□ -2.97
SCN1A-211ENST00000635893 HMGN1P05114 100 aa-3.49□□□□□ -2.97
SCN1A-211ENST00000635893 A0A1B0GV90 55 aa-3.5□□□□□ -2.97
SCN1A-211ENST00000635893 ATXN8Q156A1 80 aa-3.5□□□□□ -2.97
SCN1A-211ENST00000635893 ABCA8O94911 1581 aa-3.51□□□□□ -2.97
SCN1A-211ENST00000635893 CLTCL1P53675 1640 aa-3.51□□□□□ -2.97
SCN1A-211ENST00000635893 ADCY10Q96PN6 1610 aa-3.51□□□□□ -2.97
SCN1A-211ENST00000635893 KANTRA0A1W2PQU2 76 aa-3.51□□□□□ -2.97
SCN1A-211ENST00000635893 S100ZQ8WXG8 99 aa-3.51□□□□□ -2.97
SCN1A-211ENST00000635893 S100A16Q96FQ6 103 aaKnown RBP-3.51□□□□□ -2.97
SCN1A-211ENST00000635893 UGGT1Q9NYU2 1555 aa-3.53□□□□□ -2.97
SCN1A-211ENST00000635893 GNG8Q9UK08 70 aa-3.53□□□□□ -2.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms