RNA–Protein interactions for RNA: ENST00000635853.1

SPTAN1-228, Transcript of spectrin alpha, non-erythrocytic 1, humanhuman

TSL 5

Gene SPTAN1, Length 5,870 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTAN1-228ENST00000635853 DNAH1Q9P2D7 4330 aa4.15□□□□□ -1.75
SPTAN1-228ENST00000635853 DNHD1Q96M86 4753 aa4.14□□□□□ -1.75
SPTAN1-228ENST00000635853 DNAH3Q8TD57 4116 aa4.13□□□□□ -1.75
SPTAN1-228ENST00000635853 DNAH10Q8IVF4 4471 aa4.09□□□□□ -1.75
SPTAN1-228ENST00000635853 DNAH2Q9P225 4427 aa4.08□□□□□ -1.76
SPTAN1-228ENST00000635853 DNAH8Q96JB1 4490 aa4.07□□□□□ -1.76
SPTAN1-228ENST00000635853 KRTAP10-4P60372 401 aaPredicted RBP4.07□□□□□ -1.76
SPTAN1-228ENST00000635853 FBN3Q75N90 2809 aa4.07□□□□□ -1.76
SPTAN1-228ENST00000635853 DNAH11Q96DT5 4516 aa4.03□□□□□ -1.76
SPTAN1-228ENST00000635853 DNAH17Q9UFH2 4485 aa4.03□□□□□ -1.76
SPTAN1-228ENST00000635853 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
SPTAN1-228ENST00000635853 FBN1P35555 2871 aaKnown RBP4.01□□□□□ -1.77
SPTAN1-228ENST00000635853 CMYA5Q8N3K9 4069 aa4.01□□□□□ -1.77
SPTAN1-228ENST00000635853 MEGF8Q7Z7M0 2845 aa3.97□□□□□ -1.77
SPTAN1-228ENST00000635853 TRRAPQ9Y4A5 3859 aa3.96□□□□□ -1.78
SPTAN1-228ENST00000635853 COL7A1Q02388 2944 aa3.96□□□□□ -1.78
SPTAN1-228ENST00000635853 DNAH9Q9NYC9 4486 aa3.96□□□□□ -1.78
SPTAN1-228ENST00000635853 KRTAP10-7P60409 375 aaPredicted RBP3.95□□□□□ -1.78
SPTAN1-228ENST00000635853 VPS13DQ5THJ4 4388 aa3.95□□□□□ -1.78
SPTAN1-228ENST00000635853 SPRR2FQ96RM1 72 aa3.93□□□□□ -1.78
SPTAN1-228ENST00000635853 DNAH6Q9C0G6 4158 aa3.9□□□□□ -1.78
SPTAN1-228ENST00000635853 DYNC2H1Q8NCM8 4307 aaKnown RBP3.89□□□□□ -1.79
SPTAN1-228ENST00000635853 FRAS1Q86XX4 4008 aa3.86□□□□□ -1.79
SPTAN1-228ENST00000635853 CSMD3Q7Z407 3707 aa3.86□□□□□ -1.79
SPTAN1-228ENST00000635853 ANK2Q01484 3957 aa3.85□□□□□ -1.79
SPTAN1-228ENST00000635853 MT1HP80294 61 aa3.84□□□□□ -1.79
SPTAN1-228ENST00000635853 PLECQ15149 4684 aaKnown RBP3.82□□□□□ -1.8
SPTAN1-228ENST00000635853 SPRR2EP22531 72 aa3.78□□□□□ -1.8
SPTAN1-228ENST00000635853 SPRR2BP35325 72 aa3.78□□□□□ -1.8
SPTAN1-228ENST00000635853 SPRR2AP35326 72 aa3.78□□□□□ -1.8
SPTAN1-228ENST00000635853 SACSQ9NZJ4 4579 aa3.78□□□□□ -1.8
SPTAN1-228ENST00000635853 KRTAP19-5Q3LI72 72 aa3.74□□□□□ -1.81
SPTAN1-228ENST00000635853 MT2AP02795 61 aa3.74□□□□□ -1.81
SPTAN1-228ENST00000635853 HECTD4Q9Y4D8 3996 aa3.73□□□□□ -1.81
SPTAN1-228ENST00000635853 LYSTQ99698 3801 aa3.73□□□□□ -1.81
SPTAN1-228ENST00000635853 PRKDCP78527 4128 aaKnown RBP3.71□□□□□ -1.82
SPTAN1-228ENST00000635853 LCE3CQ5T5A8 94 aa3.71□□□□□ -1.82
SPTAN1-228ENST00000635853 SPRR2GQ9BYE4 73 aa3.7□□□□□ -1.82
SPTAN1-228ENST00000635853 KMT2CQ8NEZ4 4911 aaKnown RBP3.7□□□□□ -1.82
SPTAN1-228ENST00000635853 KRTAP4-1Q9BYQ7 146 aa3.69□□□□□ -1.82
SPTAN1-228ENST00000635853 SPRR2DP22532 72 aa3.67□□□□□ -1.82
SPTAN1-228ENST00000635853 DNAH7Q8WXX0 4024 aa3.67□□□□□ -1.82
SPTAN1-228ENST00000635853 VPS13BQ7Z7G8 4022 aa3.66□□□□□ -1.82
SPTAN1-228ENST00000635853 DNAH5Q8TE73 4624 aa3.65□□□□□ -1.82
SPTAN1-228ENST00000635853 MT1FP04733 61 aa3.64□□□□□ -1.83
SPTAN1-228ENST00000635853 LRP1BQ9NZR2 4599 aa3.63□□□□□ -1.83
SPTAN1-228ENST00000635853 APOBP04114 4563 aaKnown RBP3.63□□□□□ -1.83
SPTAN1-228ENST00000635853 RYR3Q15413 4870 aa3.62□□□□□ -1.83
SPTAN1-228ENST00000635853 STARD9Q9P2P6 4700 aa3.62□□□□□ -1.83
SPTAN1-228ENST00000635853 DYNC1H1Q14204 4646 aaKnown RBP3.62□□□□□ -1.83
SPTAN1-228ENST00000635853 LCE3BQ5TA77 95 aa3.59□□□□□ -1.84
SPTAN1-228ENST00000635853 FAT2Q9NYQ8 4349 aa3.57□□□□□ -1.84
SPTAN1-228ENST00000635853 LCE2BO14633 110 aa3.57□□□□□ -1.84
SPTAN1-228ENST00000635853 KRTAP19-4Q3LI73 84 aa3.55□□□□□ -1.84
SPTAN1-228ENST00000635853 KRTAP12-4P60329 112 aa3.54□□□□□ -1.84
SPTAN1-228ENST00000635853 PKHD1L1Q86WI1 4243 aa3.54□□□□□ -1.84
SPTAN1-228ENST00000635853 FAT3Q8TDW7 4589 aa3.53□□□□□ -1.84
SPTAN1-228ENST00000635853 KMT2AQ03164 3969 aa3.53□□□□□ -1.84
SPTAN1-228ENST00000635853 FAT1Q14517 4588 aa3.51□□□□□ -1.85
SPTAN1-228ENST00000635853 EPPK1P58107 5090 aaKnown RBP3.48□□□□□ -1.85
SPTAN1-228ENST00000635853 LRP1Q07954 4544 aaKnown RBP3.48□□□□□ -1.85
SPTAN1-228ENST00000635853 MT1GP13640 62 aa3.47□□□□□ -1.85
SPTAN1-228ENST00000635853 HYDINQ4G0P3 5121 aa3.45□□□□□ -1.86
SPTAN1-228ENST00000635853 PKHD1P08F94 4074 aa3.42□□□□□ -1.86
SPTAN1-228ENST00000635853 KRTAP19-1Q8IUB9 90 aa3.41□□□□□ -1.86
SPTAN1-228ENST00000635853 KRTAP19-8Q3LI54 63 aa3.4□□□□□ -1.87
SPTAN1-228ENST00000635853 PKD1P98161 4303 aa3.4□□□□□ -1.87
SPTAN1-228ENST00000635853 LCE2CQ5TA81 110 aa3.39□□□□□ -1.87
SPTAN1-228ENST00000635853 MT1XP80297 61 aa3.38□□□□□ -1.87
SPTAN1-228ENST00000635853 PCLOQ9Y6V0 5065 aa3.37□□□□□ -1.87
SPTAN1-228ENST00000635853 HSPG2P98160 4391 aa3.36□□□□□ -1.87
SPTAN1-228ENST00000635853 MYCBP2O75592 4640 aa3.36□□□□□ -1.87
SPTAN1-228ENST00000635853 LCE2DQ5TA82 110 aaPredicted RBP3.35□□□□□ -1.87
SPTAN1-228ENST00000635853 RYR1P21817 5038 aa3.35□□□□□ -1.87
SPTAN1-228ENST00000635853 TNXBP22105 4242 aa3.33□□□□□ -1.88
SPTAN1-228ENST00000635853 RYR2Q92736 4967 aa3.33□□□□□ -1.88
SPTAN1-228ENST00000635853 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
SPTAN1-228ENST00000635853 KRTAP17-1Q9BYP8 105 aa3.27□□□□□ -1.89
SPTAN1-228ENST00000635853 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
SPTAN1-228ENST00000635853 MT1BP07438 61 aa3.25□□□□□ -1.89
SPTAN1-228ENST00000635853 MT4P47944 62 aa3.24□□□□□ -1.89
SPTAN1-228ENST00000635853 KIAA1109Q2LD37 5005 aa3.24□□□□□ -1.89
SPTAN1-228ENST00000635853 HERC1Q15751 4861 aa3.22□□□□□ -1.89
SPTAN1-228ENST00000635853 KRTAP4-8A0A0G2JLE6 195 aa3.22□□□□□ -1.89
SPTAN1-228ENST00000635853 KRTAP4-8Q9BYQ9 185 aa3.22□□□□□ -1.89
SPTAN1-228ENST00000635853 KRTAP2-3P0C7H8 128 aa3.22□□□□□ -1.89
SPTAN1-228ENST00000635853 KRTAP2-4Q9BYR9 128 aa3.22□□□□□ -1.89
SPTAN1-228ENST00000635853 KRTAP2-1Q9BYU5 128 aa3.22□□□□□ -1.89
SPTAN1-228ENST00000635853 ABCA13Q86UQ4 5058 aa3.17□□□□□ -1.9
SPTAN1-228ENST00000635853 KRTAP19-2Q3LHN2 52 aa3.17□□□□□ -1.9
SPTAN1-228ENST00000635853 BIRC6Q9NR09 4857 aa3.16□□□□□ -1.9
SPTAN1-228ENST00000635853 KRTAP19-3Q7Z4W3 81 aa3.16□□□□□ -1.9
SPTAN1-228ENST00000635853 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
SPTAN1-228ENST00000635853 KRTAP9-8Q9BYQ0 159 aa3.13□□□□□ -1.91
SPTAN1-228ENST00000635853 HERC2O95714 4834 aa3.12□□□□□ -1.91
SPTAN1-228ENST00000635853 MUC17Q685J3 4493 aa3.12□□□□□ -1.91
SPTAN1-228ENST00000635853 FLGP20930 4061 aaPredicted RBP3.12□□□□□ -1.91
SPTAN1-228ENST00000635853 PRM1P04553 51 aa3.1□□□□□ -1.91
SPTAN1-228ENST00000635853 KRTAP9-3Q9BYQ3 159 aa3.1□□□□□ -1.91
SPTAN1-228ENST00000635853 MT3P25713 68 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms