RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 COL7A1Q02388 2944 aa4.77□□□□□ -1.65
CLIP1-219ENST00000620786 INE1O15225 51 aa4.76□□□□□ -1.65
CLIP1-219ENST00000620786 KRTAP23-1A1A580 65 aa4.74□□□□□ -1.65
CLIP1-219ENST00000620786 MT1HP80294 61 aa4.72□□□□□ -1.65
CLIP1-219ENST00000620786 DNAH1Q9P2D7 4330 aa4.71□□□□□ -1.66
CLIP1-219ENST00000620786 ZNF469Q96JG9 3925 aaPredicted RBP4.69□□□□□ -1.66
CLIP1-219ENST00000620786 KRTAP4-1Q9BYQ7 146 aa4.68□□□□□ -1.66
CLIP1-219ENST00000620786 DNAH5Q8TE73 4624 aa4.67□□□□□ -1.66
CLIP1-219ENST00000620786 AKAP9Q99996 3911 aa4.64□□□□□ -1.67
CLIP1-219ENST00000620786 KRTAP10-5P60370 271 aa4.64□□□□□ -1.67
CLIP1-219ENST00000620786 DNAH2Q9P225 4427 aa4.62□□□□□ -1.67
CLIP1-219ENST00000620786 MT2AP02795 61 aa4.6□□□□□ -1.67
CLIP1-219ENST00000620786 DNAH11Q96DT5 4516 aa4.59□□□□□ -1.67
CLIP1-219ENST00000620786 DNAH10Q8IVF4 4471 aa4.58□□□□□ -1.68
CLIP1-219ENST00000620786 SPRR2FQ96RM1 72 aa4.53□□□□□ -1.68
CLIP1-219ENST00000620786 PLECQ15149 4684 aaKnown RBP4.52□□□□□ -1.69
CLIP1-219ENST00000620786 DNAH17Q9UFH2 4485 aa4.5□□□□□ -1.69
CLIP1-219ENST00000620786 MT1FP04733 61 aa4.5□□□□□ -1.69
CLIP1-219ENST00000620786 VPS13DQ5THJ4 4388 aa4.49□□□□□ -1.69
CLIP1-219ENST00000620786 SPRR2GQ9BYE4 73 aa4.49□□□□□ -1.69
CLIP1-219ENST00000620786 CSMD3Q7Z407 3707 aa4.47□□□□□ -1.69
CLIP1-219ENST00000620786 KRTAP10-7P60409 375 aaPredicted RBP4.46□□□□□ -1.7
CLIP1-219ENST00000620786 FAT2Q9NYQ8 4349 aa4.46□□□□□ -1.7
CLIP1-219ENST00000620786 DNAH3Q8TD57 4116 aa4.45□□□□□ -1.7
CLIP1-219ENST00000620786 DYNC1H1Q14204 4646 aaKnown RBP4.45□□□□□ -1.7
CLIP1-219ENST00000620786 LRP1BQ9NZR2 4599 aa4.41□□□□□ -1.7
CLIP1-219ENST00000620786 KRTAP19-5Q3LI72 72 aa4.4□□□□□ -1.7
CLIP1-219ENST00000620786 DYNC2H1Q8NCM8 4307 aaKnown RBP4.39□□□□□ -1.71
CLIP1-219ENST00000620786 DNHD1Q96M86 4753 aa4.35□□□□□ -1.71
CLIP1-219ENST00000620786 SACSQ9NZJ4 4579 aa4.35□□□□□ -1.71
CLIP1-219ENST00000620786 STARD9Q9P2P6 4700 aa4.33□□□□□ -1.72
CLIP1-219ENST00000620786 SPRR2EP22531 72 aa4.32□□□□□ -1.72
CLIP1-219ENST00000620786 SPRR2BP35325 72 aa4.32□□□□□ -1.72
CLIP1-219ENST00000620786 SPRR2AP35326 72 aa4.32□□□□□ -1.72
CLIP1-219ENST00000620786 LCE3CQ5T5A8 94 aa4.28□□□□□ -1.72
CLIP1-219ENST00000620786 CMYA5Q8N3K9 4069 aa4.27□□□□□ -1.73
CLIP1-219ENST00000620786 RYR1P21817 5038 aa4.26□□□□□ -1.73
CLIP1-219ENST00000620786 DNAH6Q9C0G6 4158 aa4.26□□□□□ -1.73
CLIP1-219ENST00000620786 FAT1Q14517 4588 aa4.25□□□□□ -1.73
CLIP1-219ENST00000620786 PRKDCP78527 4128 aaKnown RBP4.25□□□□□ -1.73
CLIP1-219ENST00000620786 ANK2Q01484 3957 aa4.24□□□□□ -1.73
CLIP1-219ENST00000620786 DNAH8Q96JB1 4490 aa4.24□□□□□ -1.73
CLIP1-219ENST00000620786 DNAH7Q8WXX0 4024 aa4.22□□□□□ -1.73
CLIP1-219ENST00000620786 SPRR2DP22532 72 aa4.19□□□□□ -1.74
CLIP1-219ENST00000620786 KRTAP17-1Q9BYP8 105 aa4.19□□□□□ -1.74
CLIP1-219ENST00000620786 APOBP04114 4563 aaKnown RBP4.18□□□□□ -1.74
CLIP1-219ENST00000620786 VPS13BQ7Z7G8 4022 aa4.17□□□□□ -1.74
CLIP1-219ENST00000620786 RYR3Q15413 4870 aa4.16□□□□□ -1.74
CLIP1-219ENST00000620786 KMT2AQ03164 3969 aa4.16□□□□□ -1.74
CLIP1-219ENST00000620786 KRTAP19-8Q3LI54 63 aa4.15□□□□□ -1.74
CLIP1-219ENST00000620786 FAT3Q8TDW7 4589 aa4.14□□□□□ -1.75
CLIP1-219ENST00000620786 KRTAP19-4Q3LI73 84 aa4.14□□□□□ -1.75
CLIP1-219ENST00000620786 LCE2BO14633 110 aa4.11□□□□□ -1.75
CLIP1-219ENST00000620786 KRTAP19-1Q8IUB9 90 aa4.1□□□□□ -1.75
CLIP1-219ENST00000620786 HERC1Q15751 4861 aa4.07□□□□□ -1.76
CLIP1-219ENST00000620786 MT1XP80297 61 aa4.07□□□□□ -1.76
CLIP1-219ENST00000620786 LCE3BQ5TA77 95 aa4.06□□□□□ -1.76
CLIP1-219ENST00000620786 LYSTQ99698 3801 aa4.04□□□□□ -1.76
CLIP1-219ENST00000620786 MT1GP13640 62 aa4.03□□□□□ -1.76
CLIP1-219ENST00000620786 KRTAP9-8Q9BYQ0 159 aa4.03□□□□□ -1.76
CLIP1-219ENST00000620786 MT1BP07438 61 aa4.02□□□□□ -1.77
CLIP1-219ENST00000620786 LRP1Q07954 4544 aaKnown RBP4□□□□□ -1.77
CLIP1-219ENST00000620786 KRTAP12-4P60329 112 aa4□□□□□ -1.77
CLIP1-219ENST00000620786 FRAS1Q86XX4 4008 aa3.98□□□□□ -1.77
CLIP1-219ENST00000620786 RYR2Q92736 4967 aa3.97□□□□□ -1.77
CLIP1-219ENST00000620786 PKHD1L1Q86WI1 4243 aa3.97□□□□□ -1.77
CLIP1-219ENST00000620786 KRTAP9-3Q9BYQ3 159 aa3.96□□□□□ -1.78
CLIP1-219ENST00000620786 KRTAP4-8A0A0G2JLE6 195 aa3.96□□□□□ -1.78
CLIP1-219ENST00000620786 KRTAP4-8Q9BYQ9 185 aa3.96□□□□□ -1.78
CLIP1-219ENST00000620786 HSPG2P98160 4391 aa3.95□□□□□ -1.78
CLIP1-219ENST00000620786 LCE2CQ5TA81 110 aa3.93□□□□□ -1.78
CLIP1-219ENST00000620786 HECTD4Q9Y4D8 3996 aa3.89□□□□□ -1.79
CLIP1-219ENST00000620786 BIRC6Q9NR09 4857 aa3.88□□□□□ -1.79
CLIP1-219ENST00000620786 PKD1P98161 4303 aa3.84□□□□□ -1.79
CLIP1-219ENST00000620786 MYCBP2O75592 4640 aa3.84□□□□□ -1.79
CLIP1-219ENST00000620786 KIAA1109Q2LD37 5005 aa3.82□□□□□ -1.8
CLIP1-219ENST00000620786 LCE2DQ5TA82 110 aaPredicted RBP3.81□□□□□ -1.8
CLIP1-219ENST00000620786 KRTAP19-3Q7Z4W3 81 aa3.79□□□□□ -1.8
CLIP1-219ENST00000620786 HERC2O95714 4834 aa3.76□□□□□ -1.81
CLIP1-219ENST00000620786 KRTAP9-2Q9BYQ4 174 aa3.76□□□□□ -1.81
CLIP1-219ENST00000620786 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
CLIP1-219ENST00000620786 LPAP08519 4548 aa3.74□□□□□ -1.81
CLIP1-219ENST00000620786 HYDINQ4G0P3 5121 aa3.71□□□□□ -1.81
CLIP1-219ENST00000620786 MT4P47944 62 aa3.7□□□□□ -1.82
CLIP1-219ENST00000620786 MT1LQ93083 61 aa3.7□□□□□ -1.82
CLIP1-219ENST00000620786 KRTAP4-7Q9BYR0 210 aa3.69□□□□□ -1.82
CLIP1-219ENST00000620786 MT1EP04732 61 aa3.68□□□□□ -1.82
CLIP1-219ENST00000620786 PCLOQ9Y6V0 5065 aa3.68□□□□□ -1.82
CLIP1-219ENST00000620786 PKHD1P08F94 4074 aa3.67□□□□□ -1.82
CLIP1-219ENST00000620786 LCE3EQ5T5B0 92 aa3.67□□□□□ -1.82
CLIP1-219ENST00000620786 MUC17Q685J3 4493 aa3.67□□□□□ -1.82
CLIP1-219ENST00000620786 KRTAP19-2Q3LHN2 52 aa3.66□□□□□ -1.82
CLIP1-219ENST00000620786 TNXBP22105 4242 aa3.65□□□□□ -1.82
CLIP1-219ENST00000620786 KRTAP19-6Q3LI70 58 aa3.64□□□□□ -1.83
CLIP1-219ENST00000620786 KMT2CQ8NEZ4 4911 aaKnown RBP3.63□□□□□ -1.83
CLIP1-219ENST00000620786 KRTAP9-6A0A140TA67 174 aa3.61□□□□□ -1.83
CLIP1-219ENST00000620786 LRP2P98164 4655 aa3.6□□□□□ -1.83
CLIP1-219ENST00000620786 MT1MQ8N339 61 aa3.6□□□□□ -1.83
CLIP1-219ENST00000620786 SPRR5A0A1B0GTR4 108 aa3.58□□□□□ -1.84
CLIP1-219ENST00000620786 MT3P25713 68 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms