RNA–Protein interactions for RNA: ENST00000615671.1

GABPB1-212, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

Gene GABPB1, Length 6,266 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-212ENST00000615671 COL7A1Q02388 2944 aa7.97□□□□□ -1.13
GABPB1-212ENST00000615671 VPS13CQ709C8 3753 aa7.91□□□□□ -1.14
GABPB1-212ENST00000615671 BSNQ9UPA5 3926 aa7.88□□□□□ -1.15
GABPB1-212ENST00000615671 CSMD3Q7Z407 3707 aa7.87□□□□□ -1.15
GABPB1-212ENST00000615671 AKAP9Q99996 3911 aa7.64□□□□□ -1.19
GABPB1-212ENST00000615671 MT1HP80294 61 aa7.57□□□□□ -1.2
GABPB1-212ENST00000615671 DNAH9Q9NYC9 4486 aa7.57□□□□□ -1.2
GABPB1-212ENST00000615671 KRTAP4-1Q9BYQ7 146 aa7.57□□□□□ -1.2
GABPB1-212ENST00000615671 SPRR2FQ96RM1 72 aa7.51□□□□□ -1.21
GABPB1-212ENST00000615671 KRTAP23-1A1A580 65 aa7.5□□□□□ -1.21
GABPB1-212ENST00000615671 DNAH1Q9P2D7 4330 aa7.47□□□□□ -1.21
GABPB1-212ENST00000615671 DNAH5Q8TE73 4624 aa7.37□□□□□ -1.23
GABPB1-212ENST00000615671 MT2AP02795 61 aa7.36□□□□□ -1.23
GABPB1-212ENST00000615671 KRTAP10-7P60409 375 aaPredicted RBP7.36□□□□□ -1.23
GABPB1-212ENST00000615671 ZNF469Q96JG9 3925 aaPredicted RBP7.31□□□□□ -1.24
GABPB1-212ENST00000615671 DNAH2Q9P225 4427 aa7.3□□□□□ -1.24
GABPB1-212ENST00000615671 KRTAP19-5Q3LI72 72 aa7.3□□□□□ -1.24
GABPB1-212ENST00000615671 DNAH10Q8IVF4 4471 aa7.29□□□□□ -1.24
GABPB1-212ENST00000615671 MT1FP04733 61 aa7.25□□□□□ -1.25
GABPB1-212ENST00000615671 PLECQ15149 4684 aaKnown RBP7.18□□□□□ -1.26
GABPB1-212ENST00000615671 SPRR2EP22531 72 aa7.13□□□□□ -1.27
GABPB1-212ENST00000615671 SPRR2BP35325 72 aa7.13□□□□□ -1.27
GABPB1-212ENST00000615671 SPRR2AP35326 72 aa7.13□□□□□ -1.27
GABPB1-212ENST00000615671 DNAH3Q8TD57 4116 aa7.11□□□□□ -1.27
GABPB1-212ENST00000615671 FAT2Q9NYQ8 4349 aa7.11□□□□□ -1.27
GABPB1-212ENST00000615671 SPRR2GQ9BYE4 73 aa7.11□□□□□ -1.27
GABPB1-212ENST00000615671 DNAH11Q96DT5 4516 aa7.1□□□□□ -1.27
GABPB1-212ENST00000615671 ANK2Q01484 3957 aa7.05□□□□□ -1.28
GABPB1-212ENST00000615671 LCE3CQ5T5A8 94 aa7.04□□□□□ -1.28
GABPB1-212ENST00000615671 DNAH8Q96JB1 4490 aa7.04□□□□□ -1.28
GABPB1-212ENST00000615671 DNAH17Q9UFH2 4485 aa7.01□□□□□ -1.29
GABPB1-212ENST00000615671 LRP1BQ9NZR2 4599 aa7.01□□□□□ -1.29
GABPB1-212ENST00000615671 VPS13DQ5THJ4 4388 aa6.98□□□□□ -1.29
GABPB1-212ENST00000615671 VPS13BQ7Z7G8 4022 aa6.95□□□□□ -1.3
GABPB1-212ENST00000615671 LCE3BQ5TA77 95 aa6.93□□□□□ -1.3
GABPB1-212ENST00000615671 FAT1Q14517 4588 aa6.93□□□□□ -1.3
GABPB1-212ENST00000615671 STARD9Q9P2P6 4700 aa6.92□□□□□ -1.3
GABPB1-212ENST00000615671 KMT2AQ03164 3969 aa6.9□□□□□ -1.31
GABPB1-212ENST00000615671 DYNC2H1Q8NCM8 4307 aaKnown RBP6.88□□□□□ -1.31
GABPB1-212ENST00000615671 DYNC1H1Q14204 4646 aaKnown RBP6.88□□□□□ -1.31
GABPB1-212ENST00000615671 FRAS1Q86XX4 4008 aa6.88□□□□□ -1.31
GABPB1-212ENST00000615671 SPRR2DP22532 72 aa6.88□□□□□ -1.31
GABPB1-212ENST00000615671 SACSQ9NZJ4 4579 aa6.85□□□□□ -1.31
GABPB1-212ENST00000615671 PRKDCP78527 4128 aaKnown RBP6.8□□□□□ -1.32
GABPB1-212ENST00000615671 MT1GP13640 62 aa6.78□□□□□ -1.32
GABPB1-212ENST00000615671 DNAH7Q8WXX0 4024 aa6.78□□□□□ -1.32
GABPB1-212ENST00000615671 DNHD1Q96M86 4753 aa6.73□□□□□ -1.33
GABPB1-212ENST00000615671 LCE2BO14633 110 aa6.72□□□□□ -1.33
GABPB1-212ENST00000615671 RYR1P21817 5038 aa6.71□□□□□ -1.34
GABPB1-212ENST00000615671 LYSTQ99698 3801 aa6.67□□□□□ -1.34
GABPB1-212ENST00000615671 APOBP04114 4563 aaKnown RBP6.66□□□□□ -1.34
GABPB1-212ENST00000615671 KRTAP17-1Q9BYP8 105 aa6.61□□□□□ -1.35
GABPB1-212ENST00000615671 CMYA5Q8N3K9 4069 aa6.61□□□□□ -1.35
GABPB1-212ENST00000615671 KRTAP4-8A0A0G2JLE6 195 aa6.59□□□□□ -1.35
GABPB1-212ENST00000615671 KRTAP4-8Q9BYQ9 185 aa6.59□□□□□ -1.35
GABPB1-212ENST00000615671 DNAH6Q9C0G6 4158 aa6.55□□□□□ -1.36
GABPB1-212ENST00000615671 MT1XP80297 61 aa6.54□□□□□ -1.36
GABPB1-212ENST00000615671 KRTAP12-4P60329 112 aa6.54□□□□□ -1.36
GABPB1-212ENST00000615671 KRTAP19-1Q8IUB9 90 aa6.52□□□□□ -1.37
GABPB1-212ENST00000615671 FAT3Q8TDW7 4589 aa6.52□□□□□ -1.37
GABPB1-212ENST00000615671 KRTAP19-8Q3LI54 63 aa6.47□□□□□ -1.37
GABPB1-212ENST00000615671 RYR3Q15413 4870 aa6.41□□□□□ -1.38
GABPB1-212ENST00000615671 MT1BP07438 61 aa6.4□□□□□ -1.38
GABPB1-212ENST00000615671 KRTAP9-8Q9BYQ0 159 aa6.35□□□□□ -1.39
GABPB1-212ENST00000615671 LCE2CQ5TA81 110 aa6.33□□□□□ -1.4
GABPB1-212ENST00000615671 KRTAP19-4Q3LI73 84 aa6.29□□□□□ -1.4
GABPB1-212ENST00000615671 LCE2DQ5TA82 110 aaPredicted RBP6.29□□□□□ -1.4
GABPB1-212ENST00000615671 LCE3DQ9BYE3 92 aa6.28□□□□□ -1.4
GABPB1-212ENST00000615671 LRP1Q07954 4544 aaKnown RBP6.27□□□□□ -1.41
GABPB1-212ENST00000615671 HECTD4Q9Y4D8 3996 aa6.27□□□□□ -1.41
GABPB1-212ENST00000615671 MYCBP2O75592 4640 aa6.27□□□□□ -1.41
GABPB1-212ENST00000615671 LPAP08519 4548 aa6.26□□□□□ -1.41
GABPB1-212ENST00000615671 MT4P47944 62 aa6.26□□□□□ -1.41
GABPB1-212ENST00000615671 KRTAP4-7Q9BYR0 210 aa6.24□□□□□ -1.41
GABPB1-212ENST00000615671 KRTAP9-3Q9BYQ3 159 aa6.23□□□□□ -1.41
GABPB1-212ENST00000615671 HSPG2P98160 4391 aa6.21□□□□□ -1.42
GABPB1-212ENST00000615671 PKHD1L1Q86WI1 4243 aa6.2□□□□□ -1.42
GABPB1-212ENST00000615671 PKD1P98161 4303 aa6.11□□□□□ -1.43
GABPB1-212ENST00000615671 LCE3EQ5T5B0 92 aa6.1□□□□□ -1.43
GABPB1-212ENST00000615671 KRTAP19-3Q7Z4W3 81 aa6.09□□□□□ -1.43
GABPB1-212ENST00000615671 PKHD1P08F94 4074 aa6□□□□□ -1.45
GABPB1-212ENST00000615671 SPRR5A0A1B0GTR4 108 aa5.99□□□□□ -1.45
GABPB1-212ENST00000615671 LOC100996750A0A140TA64 210 aa5.97□□□□□ -1.45
GABPB1-212ENST00000615671 LCE1BQ5T7P3 118 aa5.97□□□□□ -1.45
GABPB1-212ENST00000615671 MT1LQ93083 61 aa5.96□□□□□ -1.46
GABPB1-212ENST00000615671 KRTAP9-2Q9BYQ4 174 aa5.94□□□□□ -1.46
GABPB1-212ENST00000615671 HERC1Q15751 4861 aa5.94□□□□□ -1.46
GABPB1-212ENST00000615671 MT1EP04732 61 aa5.9□□□□□ -1.46
GABPB1-212ENST00000615671 LCE1DQ5T752 114 aa5.89□□□□□ -1.47
GABPB1-212ENST00000615671 KRTAP4-3Q9BYR4 195 aa5.88□□□□□ -1.47
GABPB1-212ENST00000615671 RYR2Q92736 4967 aa5.87□□□□□ -1.47
GABPB1-212ENST00000615671 TNXBP22105 4242 aa5.84□□□□□ -1.48
GABPB1-212ENST00000615671 HYDINQ4G0P3 5121 aa5.83□□□□□ -1.48
GABPB1-212ENST00000615671 KIAA1109Q2LD37 5005 aa5.82□□□□□ -1.48
GABPB1-212ENST00000615671 PRM1P04553 51 aa5.79□□□□□ -1.48
GABPB1-212ENST00000615671 LRP2P98164 4655 aa5.79□□□□□ -1.48
GABPB1-212ENST00000615671 MT1MQ8N339 61 aa5.79□□□□□ -1.48
GABPB1-212ENST00000615671 MT3P25713 68 aa5.77□□□□□ -1.49
GABPB1-212ENST00000615671 BIRC6Q9NR09 4857 aa5.73□□□□□ -1.49
GABPB1-212ENST00000615671 HERC2O95714 4834 aa5.71□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms