RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 ZNF469Q96JG9 3925 aaPredicted RBP3.73□□□□□ -1.81
TTC28-208ENST00000612946 CSMD3Q7Z407 3707 aa3.7□□□□□ -1.82
TTC28-208ENST00000612946 DNAH7Q8WXX0 4024 aa3.69□□□□□ -1.82
TTC28-208ENST00000612946 LCE3AQ5TA76 89 aa3.66□□□□□ -1.82
TTC28-208ENST00000612946 CSMD2Q7Z408 3487 aa3.65□□□□□ -1.83
TTC28-208ENST00000612946 ANK2Q01484 3957 aa3.64□□□□□ -1.83
TTC28-208ENST00000612946 HUWE1Q7Z6Z7 4374 aaKnown RBP3.62□□□□□ -1.83
TTC28-208ENST00000612946 DNAH6Q9C0G6 4158 aa3.57□□□□□ -1.84
TTC28-208ENST00000612946 MT1HL1P0DM35 61 aa3.55□□□□□ -1.84
TTC28-208ENST00000612946 KRTAP10-5P60370 271 aa3.51□□□□□ -1.85
TTC28-208ENST00000612946 DNAH2Q9P225 4427 aa3.5□□□□□ -1.85
TTC28-208ENST00000612946 ANK3Q12955 4377 aaKnown RBP3.49□□□□□ -1.85
TTC28-208ENST00000612946 KRTAP10-4P60372 401 aaPredicted RBP3.48□□□□□ -1.85
TTC28-208ENST00000612946 SPRR5A0A1B0GTR4 108 aa3.46□□□□□ -1.86
TTC28-208ENST00000612946 KRTAP8-1Q8IUC2 63 aa3.44□□□□□ -1.86
TTC28-208ENST00000612946 LCE3CQ5T5A8 94 aa3.42□□□□□ -1.86
TTC28-208ENST00000612946 SPRR2GQ9BYE4 73 aa3.42□□□□□ -1.86
TTC28-208ENST00000612946 DNAH10Q8IVF4 4471 aa3.42□□□□□ -1.86
TTC28-208ENST00000612946 KMT2AQ03164 3969 aa3.4□□□□□ -1.86
TTC28-208ENST00000612946 FRAS1Q86XX4 4008 aa3.37□□□□□ -1.87
TTC28-208ENST00000612946 VPS13BQ7Z7G8 4022 aa3.36□□□□□ -1.87
TTC28-208ENST00000612946 LORP23490 312 aaPredicted RBP3.36□□□□□ -1.87
TTC28-208ENST00000612946 PRKDCP78527 4128 aaKnown RBP3.3□□□□□ -1.88
TTC28-208ENST00000612946 FLGP20930 4061 aaPredicted RBP3.3□□□□□ -1.88
TTC28-208ENST00000612946 DNAH11Q96DT5 4516 aa3.28□□□□□ -1.88
TTC28-208ENST00000612946 KRTAP4-5Q9BYR2 181 aa3.28□□□□□ -1.88
TTC28-208ENST00000612946 MT3P25713 68 aa3.27□□□□□ -1.89
TTC28-208ENST00000612946 VPS13DQ5THJ4 4388 aa3.23□□□□□ -1.89
TTC28-208ENST00000612946 KRTAP19-5Q3LI72 72 aa3.22□□□□□ -1.89
TTC28-208ENST00000612946 KRTAP10-7P60409 375 aaPredicted RBP3.21□□□□□ -1.9
TTC28-208ENST00000612946 PKHD1P08F94 4074 aa3.18□□□□□ -1.9
TTC28-208ENST00000612946 KRTAP12-4P60329 112 aa3.17□□□□□ -1.9
TTC28-208ENST00000612946 DYNC2H1Q8NCM8 4307 aaKnown RBP3.17□□□□□ -1.9
TTC28-208ENST00000612946 FAT2Q9NYQ8 4349 aa3.17□□□□□ -1.9
TTC28-208ENST00000612946 DNAH17Q9UFH2 4485 aa3.16□□□□□ -1.9
TTC28-208ENST00000612946 DNAH9Q9NYC9 4486 aa3.15□□□□□ -1.91
TTC28-208ENST00000612946 SPRR2FQ96RM1 72 aa3.15□□□□□ -1.91
TTC28-208ENST00000612946 LRP1Q07954 4544 aaKnown RBP3.13□□□□□ -1.91
TTC28-208ENST00000612946 KRTAP19-8Q3LI54 63 aa3.09□□□□□ -1.91
TTC28-208ENST00000612946 MT2AP02795 61 aa3.08□□□□□ -1.92
TTC28-208ENST00000612946 MT1HP80294 61 aa3.08□□□□□ -1.92
TTC28-208ENST00000612946 DYNC1H1Q14204 4646 aaKnown RBP3.03□□□□□ -1.92
TTC28-208ENST00000612946 PKHD1L1Q86WI1 4243 aa3.03□□□□□ -1.92
TTC28-208ENST00000612946 DNAH8Q96JB1 4490 aa3.02□□□□□ -1.93
TTC28-208ENST00000612946 STARD9Q9P2P6 4700 aa3.02□□□□□ -1.93
TTC28-208ENST00000612946 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
TTC28-208ENST00000612946 SPRR2EP22531 72 aa3.01□□□□□ -1.93
TTC28-208ENST00000612946 SPRR2BP35325 72 aa3.01□□□□□ -1.93
TTC28-208ENST00000612946 SPRR2AP35326 72 aa3.01□□□□□ -1.93
TTC28-208ENST00000612946 KRTAP4-1Q9BYQ7 146 aa3□□□□□ -1.93
TTC28-208ENST00000612946 LCE3DQ9BYE3 92 aa3□□□□□ -1.93
TTC28-208ENST00000612946 HSPG2P98160 4391 aa2.99□□□□□ -1.93
TTC28-208ENST00000612946 MT1FP04733 61 aa2.97□□□□□ -1.93
TTC28-208ENST00000612946 PLECQ15149 4684 aaKnown RBP2.96□□□□□ -1.94
TTC28-208ENST00000612946 MT1XP80297 61 aa2.95□□□□□ -1.94
TTC28-208ENST00000612946 DNAH5Q8TE73 4624 aa2.94□□□□□ -1.94
TTC28-208ENST00000612946 LCE3BQ5TA77 95 aa2.94□□□□□ -1.94
TTC28-208ENST00000612946 SACSQ9NZJ4 4579 aa2.93□□□□□ -1.94
TTC28-208ENST00000612946 KRTAP19-1Q8IUB9 90 aa2.93□□□□□ -1.94
TTC28-208ENST00000612946 PKD1P98161 4303 aa2.93□□□□□ -1.94
TTC28-208ENST00000612946 SPRR2DP22532 72 aa2.92□□□□□ -1.94
TTC28-208ENST00000612946 MT1GP13640 62 aa2.9□□□□□ -1.95
TTC28-208ENST00000612946 MT1LQ93083 61 aa2.89□□□□□ -1.95
TTC28-208ENST00000612946 APOBP04114 4563 aaKnown RBP2.88□□□□□ -1.95
TTC28-208ENST00000612946 LCE2BO14633 110 aa2.87□□□□□ -1.95
TTC28-208ENST00000612946 FAT1Q14517 4588 aa2.81□□□□□ -1.96
TTC28-208ENST00000612946 LRP1BQ9NZR2 4599 aa2.81□□□□□ -1.96
TTC28-208ENST00000612946 MYCBP2O75592 4640 aa2.8□□□□□ -1.96
TTC28-208ENST00000612946 MT1EP04732 61 aa2.8□□□□□ -1.96
TTC28-208ENST00000612946 TNXBP22105 4242 aa2.79□□□□□ -1.96
TTC28-208ENST00000612946 FAT3Q8TDW7 4589 aa2.79□□□□□ -1.96
TTC28-208ENST00000612946 KRTAP2-3P0C7H8 128 aa2.78□□□□□ -1.96
TTC28-208ENST00000612946 KRTAP2-4Q9BYR9 128 aa2.78□□□□□ -1.96
TTC28-208ENST00000612946 KRTAP2-1Q9BYU5 128 aa2.78□□□□□ -1.96
TTC28-208ENST00000612946 PRM1P04553 51 aa2.77□□□□□ -1.97
TTC28-208ENST00000612946 MT1BP07438 61 aa2.76□□□□□ -1.97
TTC28-208ENST00000612946 LCE2CQ5TA81 110 aa2.73□□□□□ -1.97
TTC28-208ENST00000612946 KRTAP19-3Q7Z4W3 81 aa2.72□□□□□ -1.97
TTC28-208ENST00000612946 RYR1P21817 5038 aa2.71□□□□□ -1.98
TTC28-208ENST00000612946 MT1AP04731 61 aa2.69□□□□□ -1.98
TTC28-208ENST00000612946 LCE2DQ5TA82 110 aaPredicted RBP2.68□□□□□ -1.98
TTC28-208ENST00000612946 KRTAP9-8Q9BYQ0 159 aa2.67□□□□□ -1.98
TTC28-208ENST00000612946 KRTAP9-3Q9BYQ3 159 aa2.64□□□□□ -1.99
TTC28-208ENST00000612946 DNHD1Q96M86 4753 aa2.6□□□□□ -1.99
TTC28-208ENST00000612946 MT1MQ8N339 61 aa2.59□□□□□ -1.99
TTC28-208ENST00000612946 MT4P47944 62 aa2.59□□□□□ -1.99
TTC28-208ENST00000612946 RYR3Q15413 4870 aa2.56□□□□□ -2
TTC28-208ENST00000612946 KRTAP4-8A0A0G2JLE6 195 aa2.56□□□□□ -2
TTC28-208ENST00000612946 KRTAP4-8Q9BYQ9 185 aa2.56□□□□□ -2
TTC28-208ENST00000612946 KRTAP17-1Q9BYP8 105 aa2.55□□□□□ -2
TTC28-208ENST00000612946 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
TTC28-208ENST00000612946 LCE1DQ5T752 114 aa2.5□□□□□ -2.01
TTC28-208ENST00000612946 MUC17Q685J3 4493 aa2.49□□□□□ -2.01
TTC28-208ENST00000612946 BIRC6Q9NR09 4857 aa2.48□□□□□ -2.01
TTC28-208ENST00000612946 PCLOQ9Y6V0 5065 aa2.48□□□□□ -2.01
TTC28-208ENST00000612946 KRTAP19-6Q3LI70 58 aa2.45□□□□□ -2.02
TTC28-208ENST00000612946 RYR2Q92736 4967 aa2.44□□□□□ -2.02
TTC28-208ENST00000612946 KRTAP19-2Q3LHN2 52 aa2.43□□□□□ -2.02
TTC28-208ENST00000612946 LRP2P98164 4655 aa2.42□□□□□ -2.02
TTC28-208ENST00000612946 KRTAP4-7Q9BYR0 210 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms