RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 NDUFA4O00483 81 aa1.29□□□□□ -2.2
VPS4B-203ENST00000588323 KRTAP13-4Q3LI77 160 aa1.29□□□□□ -2.2
VPS4B-203ENST00000588323 DEFB104AQ8WTQ1 72 aa1.29□□□□□ -2.2
VPS4B-203ENST00000588323 TMEM167BQ9NRX6 74 aa1.29□□□□□ -2.2
VPS4B-203ENST00000588323 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.28□□□□□ -2.2
VPS4B-203ENST00000588323 LELP1Q5T871 98 aa1.28□□□□□ -2.2
VPS4B-203ENST00000588323 ZNF625Q96I27 306 aaPredicted RBP1.28□□□□□ -2.2
VPS4B-203ENST00000588323 OBSCN-AS1Q96MR7 158 aa1.28□□□□□ -2.2
VPS4B-203ENST00000588323 ETDCA0A1B0GVM5 59 aa1.27□□□□□ -2.21
VPS4B-203ENST00000588323 NCR3O14931 201 aa1.27□□□□□ -2.21
VPS4B-203ENST00000588323 DEFB135Q30KP9 77 aa1.27□□□□□ -2.21
VPS4B-203ENST00000588323 KRTAP6-3Q3LI67 103 aa1.27□□□□□ -2.21
VPS4B-203ENST00000588323 PCOTHQ58A44 107 aa1.27□□□□□ -2.21
VPS4B-203ENST00000588323 SSBP3-AS1Q7Z2R9 100 aa1.27□□□□□ -2.21
VPS4B-203ENST00000588323 SPRR4Q96PI1 79 aa1.27□□□□□ -2.21
VPS4B-203ENST00000588323 NBDYA0A0U1RRE5 68 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 IGIPA6NJ69 53 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 G3V318 75 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 SMR3BP02814 79 aaPredicted RBP1.26□□□□□ -2.21
VPS4B-203ENST00000588323 COX7BP24311 80 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 DEFB114Q30KQ6 69 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 Q6ZQY7 126 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 UBE2DNLQ8IWF7 75 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 PLAC8Q9NZF1 115 aa1.26□□□□□ -2.21
VPS4B-203ENST00000588323 A0A087WTM6 91 aa1.25□□□□□ -2.21
VPS4B-203ENST00000588323 DEFB131BA0A096LNP1 70 aa1.25□□□□□ -2.21
VPS4B-203ENST00000588323 LINC01546A6NGU7 62 aa1.25□□□□□ -2.21
VPS4B-203ENST00000588323 H3BUA1 57 aa1.25□□□□□ -2.21
VPS4B-203ENST00000588323 MT1HL1P0DM35 61 aa1.25□□□□□ -2.21
VPS4B-203ENST00000588323 KRTAP12-1P59990 96 aa1.25□□□□□ -2.21
VPS4B-203ENST00000588323 Q96NJ1 140 aa1.25□□□□□ -2.21
VPS4B-203ENST00000588323 LOC110117498A0A087WWA1 95 aa1.24□□□□□ -2.21
VPS4B-203ENST00000588323 CPSF4LA6NMK7 179 aaKnown RBP1.24□□□□□ -2.21
VPS4B-203ENST00000588323 INE1O15225 51 aa1.24□□□□□ -2.21
VPS4B-203ENST00000588323 DEFB4AO15263 64 aa1.24□□□□□ -2.21
VPS4B-203ENST00000588323 KRTAP10-4P60372 401 aaPredicted RBP1.24□□□□□ -2.21
VPS4B-203ENST00000588323 USMG5Q96IX5 58 aa1.24□□□□□ -2.21
VPS4B-203ENST00000588323 SSPOA2VEC9 5147 aa1.24□□□□□ -2.21
VPS4B-203ENST00000588323 LINC00959A0A1B0GUT2 108 aa1.23□□□□□ -2.21
VPS4B-203ENST00000588323 Q6ZRX8 168 aa1.23□□□□□ -2.21
VPS4B-203ENST00000588323 DNAH8Q96JB1 4490 aa1.22□□□□□ -2.21
VPS4B-203ENST00000588323 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.22□□□□□ -2.21
VPS4B-203ENST00000588323 Q6ZSA8 131 aa1.22□□□□□ -2.21
VPS4B-203ENST00000588323 SMIM11BQ8TCY0 68 aa1.22□□□□□ -2.21
VPS4B-203ENST00000588323 PLAC4Q8WY50 150 aa1.22□□□□□ -2.21
VPS4B-203ENST00000588323 LINC00472Q9H8W2 130 aa1.22□□□□□ -2.21
VPS4B-203ENST00000588323 IAPPP10997 89 aa1.21□□□□□ -2.22
VPS4B-203ENST00000588323 UNQ6190/PRO20217Q6UXQ8 127 aa1.21□□□□□ -2.22
VPS4B-203ENST00000588323 LEAP2Q969E1 77 aa1.21□□□□□ -2.22
VPS4B-203ENST00000588323 KCNQ1DNQ9H478 68 aa1.21□□□□□ -2.22
VPS4B-203ENST00000588323 CRIPTQ9P021 101 aa1.21□□□□□ -2.22
VPS4B-203ENST00000588323 SPART-AS1P0CW21 52 aa1.2□□□□□ -2.22
VPS4B-203ENST00000588323 RPS27P42677 84 aaKnown RBP1.2□□□□□ -2.22
VPS4B-203ENST00000588323 CRIP1P50238 77 aa1.2□□□□□ -2.22
VPS4B-203ENST00000588323 LINC00158P58513 81 aa1.2□□□□□ -2.22
VPS4B-203ENST00000588323 LINC00308Q8TCZ7 52 aa1.2□□□□□ -2.22
VPS4B-203ENST00000588323 SMIM2Q9BVW6 85 aa1.2□□□□□ -2.22
VPS4B-203ENST00000588323 KLK9Q2XQG4 91 aa1.19□□□□□ -2.22
VPS4B-203ENST00000588323 USH2AO75445 5202 aa1.18□□□□□ -2.22
VPS4B-203ENST00000588323 LPAP08519 4548 aa1.18□□□□□ -2.22
VPS4B-203ENST00000588323 SPINK13Q1W4C9 94 aa1.18□□□□□ -2.22
VPS4B-203ENST00000588323 LINC01590Q5TEZ4 76 aa1.18□□□□□ -2.22
VPS4B-203ENST00000588323 ARHGAP5-AS1Q96IT6 56 aa1.18□□□□□ -2.22
VPS4B-203ENST00000588323 CDKN2A-AS1Q9UH64 79 aa1.18□□□□□ -2.22
VPS4B-203ENST00000588323 GVQW2A0A096LPI5 108 aaPredicted RBP1.17□□□□□ -2.22
VPS4B-203ENST00000588323 ANGP03950 147 aaKnown RBP1.17□□□□□ -2.22
VPS4B-203ENST00000588323 HTN3P15516 51 aa1.17□□□□□ -2.22
VPS4B-203ENST00000588323 Q8IZM0 81 aa1.17□□□□□ -2.22
VPS4B-203ENST00000588323 SYNE2Q8WXH0 6885 aaKnown RBP1.16□□□□□ -2.22
VPS4B-203ENST00000588323 H3BNG1 76 aa1.16□□□□□ -2.22
VPS4B-203ENST00000588323 NDUFA1O15239 70 aa1.16□□□□□ -2.22
VPS4B-203ENST00000588323 DEFB131AP59861 70 aa1.16□□□□□ -2.22
VPS4B-203ENST00000588323 RHPN1-AS1Q9BWJ2 59 aa1.16□□□□□ -2.22
VPS4B-203ENST00000588323 APELAP0DMC3 54 aa1.15□□□□□ -2.23
VPS4B-203ENST00000588323 RPL39P5Q59GN2 51 aa1.15□□□□□ -2.23
VPS4B-203ENST00000588323 TTTY10Q9BZA0 68 aa1.15□□□□□ -2.23
VPS4B-203ENST00000588323 TP53AIP1Q9HCN2 124 aa1.15□□□□□ -2.23
VPS4B-203ENST00000588323 PIGYQ3MUY2 71 aa1.14□□□□□ -2.23
VPS4B-203ENST00000588323 LINC00575Q6W349 94 aa1.14□□□□□ -2.23
VPS4B-203ENST00000588323 A0A096LPF7 62 aa1.13□□□□□ -2.23
VPS4B-203ENST00000588323 DEFB130BP0DP73 79 aa1.13□□□□□ -2.23
VPS4B-203ENST00000588323 DEFB130AP0DP74 79 aa1.13□□□□□ -2.23
VPS4B-203ENST00000588323 CNFNQ9BYD5 112 aa1.13□□□□□ -2.23
VPS4B-203ENST00000588323 WFDC10BQ8IUB3 73 aa1.12□□□□□ -2.23
VPS4B-203ENST00000588323 TMEM167AQ8TBQ9 72 aa1.12□□□□□ -2.23
VPS4B-203ENST00000588323 C6orf48Q9UBA6 75 aa1.12□□□□□ -2.23
VPS4B-203ENST00000588323 MUC17Q685J3 4493 aa1.12□□□□□ -2.23
VPS4B-203ENST00000588323 NEBP20929 6669 aa1.12□□□□□ -2.23
VPS4B-203ENST00000588323 A8MTW9 85 aa1.11□□□□□ -2.23
VPS4B-203ENST00000588323 K7EIM0 57 aa1.11□□□□□ -2.23
VPS4B-203ENST00000588323 SPINK6Q6UWN8 80 aa1.11□□□□□ -2.23
VPS4B-203ENST00000588323 COX6B2Q6YFQ2 88 aa1.11□□□□□ -2.23
VPS4B-203ENST00000588323 MRPL34Q9BQ48 92 aaKnown RBP1.11□□□□□ -2.23
VPS4B-203ENST00000588323 MACF1Q9UPN3 7388 aaKnown RBP1.1□□□□□ -2.23
VPS4B-203ENST00000588323 K7EQZ3 153 aa1.1□□□□□ -2.23
VPS4B-203ENST00000588323 RPL37P61927 97 aaKnown RBP1.1□□□□□ -2.23
VPS4B-203ENST00000588323 LINC01556Q5JQF7 62 aa1.1□□□□□ -2.23
VPS4B-203ENST00000588323 WFDC13Q8IUB5 93 aa1.1□□□□□ -2.23
VPS4B-203ENST00000588323 NOP10Q9NPE3 64 aaKnown RBP1.1□□□□□ -2.23
VPS4B-203ENST00000588323 I3L2K1 104 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms