RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 VPS13DQ5THJ4 4388 aa2.63□□□□□ -1.99
VPS35P1-201ENST00000563400 SPRR1BP22528 89 aa2.63□□□□□ -1.99
VPS35P1-201ENST00000563400 LCE3CQ5T5A8 94 aa2.63□□□□□ -1.99
VPS35P1-201ENST00000563400 IGLV5-48A0A075B6I7 105 aa2.62□□□□□ -1.99
VPS35P1-201ENST00000563400 Q6ZQY7 126 aa2.62□□□□□ -1.99
VPS35P1-201ENST00000563400 DNAH1Q9P2D7 4330 aa2.62□□□□□ -1.99
VPS35P1-201ENST00000563400 KRTAP13-1Q8IUC0 172 aa2.61□□□□□ -1.99
VPS35P1-201ENST00000563400 DNAH6Q9C0G6 4158 aa2.6□□□□□ -1.99
VPS35P1-201ENST00000563400 SACSQ9NZJ4 4579 aa2.6□□□□□ -1.99
VPS35P1-201ENST00000563400 PCLOQ9Y6V0 5065 aa2.59□□□□□ -1.99
VPS35P1-201ENST00000563400 NDUFB1O75438 58 aa2.59□□□□□ -1.99
VPS35P1-201ENST00000563400 HYDINQ4G0P3 5121 aa2.59□□□□□ -2
VPS35P1-201ENST00000563400 LINC00643Q86TS7 51 aa2.58□□□□□ -2
VPS35P1-201ENST00000563400 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
VPS35P1-201ENST00000563400 TRBV7-4A0A0J9YYF1 115 aa2.58□□□□□ -2
VPS35P1-201ENST00000563400 KRTAP10-4P60372 401 aaPredicted RBP2.57□□□□□ -2
VPS35P1-201ENST00000563400 HERC2O95714 4834 aa2.56□□□□□ -2
VPS35P1-201ENST00000563400 INE1O15225 51 aa2.56□□□□□ -2
VPS35P1-201ENST00000563400 DNAH17Q9UFH2 4485 aa2.56□□□□□ -2
VPS35P1-201ENST00000563400 ACYP1P07311 99 aa2.55□□□□□ -2
VPS35P1-201ENST00000563400 LINC00208Q96KT6 92 aa2.55□□□□□ -2
VPS35P1-201ENST00000563400 NREPQ16612 68 aa2.54□□□□□ -2
VPS35P1-201ENST00000563400 UBL5Q9BZL1 73 aa2.54□□□□□ -2
VPS35P1-201ENST00000563400 RYR1P21817 5038 aa2.54□□□□□ -2
VPS35P1-201ENST00000563400 DNAH10Q8IVF4 4471 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 LOC110117498A0A087WWA1 95 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 PRR15LQ9BU68 103 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 DNAH2Q9P225 4427 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 DNAH11Q96DT5 4516 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 DNAH5Q8TE73 4624 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 FRAS1Q86XX4 4008 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 PKD1P98161 4303 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 HECTD4Q9Y4D8 3996 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 FAT2Q9NYQ8 4349 aa2.51□□□□□ -2.01
VPS35P1-201ENST00000563400 DMBT1Q9UGM3 2413 aaPredicted RBP2.51□□□□□ -2.01
VPS35P1-201ENST00000563400 LINC01558Q9Y6Z2 57 aa2.5□□□□□ -2.01
VPS35P1-201ENST00000563400 LRP1BQ9NZR2 4599 aa2.5□□□□□ -2.01
VPS35P1-201ENST00000563400 IGKV4-1P06312 121 aa2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 MT1HL1P0DM35 61 aa2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 SRRM2Q9UQ35 2752 aaKnown RBP2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 FLG2Q5D862 2391 aaPredicted RBP2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 KIAA1109Q2LD37 5005 aa2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 A0A087WVE0 104 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 OBSCN-AS1Q96MR7 158 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 Q96NJ1 140 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 PKHD1P08F94 4074 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 ATP5EP2Q5VTU8 51 aa2.47□□□□□ -2.01
VPS35P1-201ENST00000563400 SNURFQ9Y675 71 aa2.47□□□□□ -2.01
VPS35P1-201ENST00000563400 DYNC1H1Q14204 4646 aaKnown RBP2.46□□□□□ -2.02
VPS35P1-201ENST00000563400 ABCA13Q86UQ4 5058 aa2.45□□□□□ -2.02
VPS35P1-201ENST00000563400 SPRR5A0A1B0GTR4 108 aa2.44□□□□□ -2.02
VPS35P1-201ENST00000563400 UQCR11O14957 56 aa2.44□□□□□ -2.02
VPS35P1-201ENST00000563400 TP53AIP1Q9HCN2 124 aa2.44□□□□□ -2.02
VPS35P1-201ENST00000563400 VPS13BQ7Z7G8 4022 aa2.43□□□□□ -2.02
VPS35P1-201ENST00000563400 LINC00472Q9H8W2 130 aa2.43□□□□□ -2.02
VPS35P1-201ENST00000563400 APOBP04114 4563 aaKnown RBP2.43□□□□□ -2.02
VPS35P1-201ENST00000563400 DNAH8Q96JB1 4490 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 LCE3EQ5T5B0 92 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 HSPG2P98160 4391 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 KRTAP13-4Q3LI77 160 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 KRTAP13-3Q3SY46 172 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 C9orf92A6NGG3 77 aa2.41□□□□□ -2.02
VPS35P1-201ENST00000563400 ACYP2P14621 99 aa2.41□□□□□ -2.02
VPS35P1-201ENST00000563400 MRPL34Q9BQ48 92 aaKnown RBP2.41□□□□□ -2.02
VPS35P1-201ENST00000563400 RPL37P61927 97 aaKnown RBP2.4□□□□□ -2.03
VPS35P1-201ENST00000563400 WFDC13Q8IUB5 93 aa2.4□□□□□ -2.03
VPS35P1-201ENST00000563400 KRTAP12-2P59991 146 aa2.39□□□□□ -2.03
VPS35P1-201ENST00000563400 LINC00846Q9NV44 126 aa2.39□□□□□ -2.03
VPS35P1-201ENST00000563400 FAT1Q14517 4588 aa2.39□□□□□ -2.03
VPS35P1-201ENST00000563400 PP632Q6XCG6 107 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 COX6B2Q6YFQ2 88 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 HERC1Q15751 4861 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 SPINK7P58062 85 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 ZCCHC13Q8WW36 166 aaKnown RBP2.36□□□□□ -2.03
VPS35P1-201ENST00000563400 K7EQZ3 153 aa2.35□□□□□ -2.03
VPS35P1-201ENST00000563400 PCOTHQ58A44 107 aa2.35□□□□□ -2.03
VPS35P1-201ENST00000563400 UBR4Q5T4S7 5183 aa2.34□□□□□ -2.04
VPS35P1-201ENST00000563400 H0Y9P7 68 aa2.32□□□□□ -2.04
VPS35P1-201ENST00000563400 MMP24-AS1A0A0U1RRL7 71 aa2.32□□□□□ -2.04
VPS35P1-201ENST00000563400 MYCBP2O75592 4640 aa2.31□□□□□ -2.04
VPS35P1-201ENST00000563400 M0R2T5 61 aa2.3□□□□□ -2.04
VPS35P1-201ENST00000563400 SPATA8Q6RVD6 105 aa2.3□□□□□ -2.04
VPS35P1-201ENST00000563400 LRP1Q07954 4544 aaKnown RBP2.29□□□□□ -2.04
VPS35P1-201ENST00000563400 LCE3AQ5TA76 89 aa2.29□□□□□ -2.04
VPS35P1-201ENST00000563400 OBSCNQ5VST9 7968 aa2.28□□□□□ -2.04
VPS35P1-201ENST00000563400 FAT3Q8TDW7 4589 aa2.28□□□□□ -2.04
VPS35P1-201ENST00000563400 KRTAP5-2Q701N4 177 aa2.28□□□□□ -2.04
VPS35P1-201ENST00000563400 KRTAP12-1P59990 96 aa2.27□□□□□ -2.05
VPS35P1-201ENST00000563400 PKHD1L1Q86WI1 4243 aa2.27□□□□□ -2.05
VPS35P1-201ENST00000563400 TNXBP22105 4242 aa2.26□□□□□ -2.05
VPS35P1-201ENST00000563400 H1FX-AS1Q4G0G2 97 aa2.26□□□□□ -2.05
VPS35P1-201ENST00000563400 PLAC4Q8WY50 150 aa2.26□□□□□ -2.05
VPS35P1-201ENST00000563400 KRTAP10-10P60014 251 aa2.23□□□□□ -2.05
VPS35P1-201ENST00000563400 HMCN2Q8NDA2 5059 aa2.23□□□□□ -2.05
VPS35P1-201ENST00000563400 KRTAP4-3Q9BYR4 195 aa2.22□□□□□ -2.05
VPS35P1-201ENST00000563400 A0A1B0GU69 56 aa2.21□□□□□ -2.06
VPS35P1-201ENST00000563400 KRTAP6-3Q3LI67 103 aa2.2□□□□□ -2.06
VPS35P1-201ENST00000563400 S4R3F8 94 aa2.2□□□□□ -2.06
VPS35P1-201ENST00000563400 LCE3DQ9BYE3 92 aa2.19□□□□□ -2.06
VPS35P1-201ENST00000563400 HMCN1Q96RW7 5635 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms