RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 F8P00451 2351 aa1.67□□□□□ -2.14
VPS35-203ENST00000562420 ANK2Q01484 3957 aa1.67□□□□□ -2.14
VPS35-203ENST00000562420 ALMS1Q8TCU4 4167 aa1.67□□□□□ -2.14
VPS35-203ENST00000562420 SETD2Q9BYW2 2564 aaPredicted RBP1.66□□□□□ -2.14
VPS35-203ENST00000562420 ATRQ13535 2644 aa1.66□□□□□ -2.14
VPS35-203ENST00000562420 HIVEP1P15822 2718 aa1.66□□□□□ -2.14
VPS35-203ENST00000562420 NF1P21359 2839 aa1.66□□□□□ -2.14
VPS35-203ENST00000562420 JMJD1CQ15652 2540 aa1.66□□□□□ -2.14
VPS35-203ENST00000562420 TRRAPQ9Y4A5 3859 aa1.66□□□□□ -2.14
VPS35-203ENST00000562420 FN1P02751 2386 aaKnown RBP1.65□□□□□ -2.14
VPS35-203ENST00000562420 NIPBLQ6KC79 2804 aaeCLIP1.65□□□□□ -2.14
VPS35-203ENST00000562420 A0A096LPF7 62 aa1.65□□□□□ -2.15
VPS35-203ENST00000562420 SPACA4Q8TDM5 124 aa1.65□□□□□ -2.15
VPS35-203ENST00000562420 PRLHP81277 87 aa1.64□□□□□ -2.15
VPS35-203ENST00000562420 KRTAP21-3Q3LHN1 58 aa1.64□□□□□ -2.15
VPS35-203ENST00000562420 KRTAP13-1Q8IUC0 172 aa1.63□□□□□ -2.15
VPS35-203ENST00000562420 SMR3AQ99954 134 aa1.63□□□□□ -2.15
VPS35-203ENST00000562420 DNAH3Q8TD57 4116 aa1.62□□□□□ -2.15
VPS35-203ENST00000562420 COL6A5A8TX70 2615 aa1.61□□□□□ -2.15
VPS35-203ENST00000562420 M0QZ58 72 aa1.61□□□□□ -2.15
VPS35-203ENST00000562420 DEFB135Q30KP9 77 aa1.61□□□□□ -2.15
VPS35-203ENST00000562420 S4R3F8 94 aa1.61□□□□□ -2.15
VPS35-203ENST00000562420 STAB1Q9NY15 2570 aa1.61□□□□□ -2.15
VPS35-203ENST00000562420 MGAM2Q2M2H8 2515 aa1.6□□□□□ -2.15
VPS35-203ENST00000562420 HMCN1Q96RW7 5635 aa1.59□□□□□ -2.15
VPS35-203ENST00000562420 SPINK1P00995 79 aa1.59□□□□□ -2.15
VPS35-203ENST00000562420 FBN3Q75N90 2809 aa1.59□□□□□ -2.16
VPS35-203ENST00000562420 DNHD1Q96M86 4753 aa1.59□□□□□ -2.16
VPS35-203ENST00000562420 VWFP04275 2813 aa1.58□□□□□ -2.16
VPS35-203ENST00000562420 NBEAL1Q6ZS30 2694 aa1.58□□□□□ -2.16
VPS35-203ENST00000562420 CMYA5Q8N3K9 4069 aa1.58□□□□□ -2.16
VPS35-203ENST00000562420 TENM1Q9UKZ4 2725 aa1.58□□□□□ -2.16
VPS35-203ENST00000562420 RPS29P62273 56 aaKnown RBP1.57□□□□□ -2.16
VPS35-203ENST00000562420 Q5VSD8 79 aa1.57□□□□□ -2.16
VPS35-203ENST00000562420 FLG2Q5D862 2391 aaPredicted RBP1.57□□□□□ -2.16
VPS35-203ENST00000562420 HTN3P15516 51 aa1.56□□□□□ -2.16
VPS35-203ENST00000562420 C10orf95Q9H7T3 257 aa1.56□□□□□ -2.16
VPS35-203ENST00000562420 APLNQ9ULZ1 77 aa1.56□□□□□ -2.16
VPS35-203ENST00000562420 NOTCH1P46531 2555 aa1.56□□□□□ -2.16
VPS35-203ENST00000562420 FBN1P35555 2871 aaKnown RBP1.56□□□□□ -2.16
VPS35-203ENST00000562420 A0A096LNI7 61 aa1.55□□□□□ -2.16
VPS35-203ENST00000562420 NBEAL2Q6ZNJ1 2754 aa1.55□□□□□ -2.16
VPS35-203ENST00000562420 STAB2Q8WWQ8 2551 aa1.54□□□□□ -2.16
VPS35-203ENST00000562420 SPINK6Q6UWN8 80 aa1.54□□□□□ -2.16
VPS35-203ENST00000562420 PKD1L1Q8TDX9 2849 aa1.54□□□□□ -2.16
VPS35-203ENST00000562420 DNAH7Q8WXX0 4024 aa1.54□□□□□ -2.16
VPS35-203ENST00000562420 DEFB4AO15263 64 aa1.53□□□□□ -2.16
VPS35-203ENST00000562420 KRTAP12-1P59990 96 aa1.53□□□□□ -2.16
VPS35-203ENST00000562420 HUWE1Q7Z6Z7 4374 aaKnown RBP1.53□□□□□ -2.16
VPS35-203ENST00000562420 TENM2Q9NT68 2774 aa1.53□□□□□ -2.16
VPS35-203ENST00000562420 DYNC2H1Q8NCM8 4307 aaKnown RBP1.52□□□□□ -2.17
VPS35-203ENST00000562420 PRKDCP78527 4128 aaKnown RBP1.51□□□□□ -2.17
VPS35-203ENST00000562420 LYSTQ99698 3801 aa1.51□□□□□ -2.17
VPS35-203ENST00000562420 DNAH9Q9NYC9 4486 aa1.51□□□□□ -2.17
VPS35-203ENST00000562420 KRTAP21-2Q3LI59 83 aa1.5□□□□□ -2.17
VPS35-203ENST00000562420 CSMD3Q7Z407 3707 aa1.5□□□□□ -2.17
VPS35-203ENST00000562420 DNAH1Q9P2D7 4330 aa1.5□□□□□ -2.17
VPS35-203ENST00000562420 A0A0D9SG42 100 aa1.49□□□□□ -2.17
VPS35-203ENST00000562420 KRTAP13-4Q3LI77 160 aa1.49□□□□□ -2.17
VPS35-203ENST00000562420 TENM3Q9P273 2699 aa1.49□□□□□ -2.17
VPS35-203ENST00000562420 KRTAP12-4P60329 112 aa1.48□□□□□ -2.17
VPS35-203ENST00000562420 MEGF8Q7Z7M0 2845 aa1.48□□□□□ -2.17
VPS35-203ENST00000562420 KMT2AQ03164 3969 aa1.48□□□□□ -2.17
VPS35-203ENST00000562420 DNAH6Q9C0G6 4158 aa1.48□□□□□ -2.17
VPS35-203ENST00000562420 TGP01266 2768 aa1.47□□□□□ -2.17
VPS35-203ENST00000562420 PLECQ15149 4684 aaKnown RBP1.47□□□□□ -2.17
VPS35-203ENST00000562420 HECTD4Q9Y4D8 3996 aa1.47□□□□□ -2.17
VPS35-203ENST00000562420 KRTAP6-3Q3LI67 103 aa1.46□□□□□ -2.18
VPS35-203ENST00000562420 COL7A1Q02388 2944 aa1.46□□□□□ -2.18
VPS35-203ENST00000562420 VPS13DQ5THJ4 4388 aa1.45□□□□□ -2.18
VPS35-203ENST00000562420 KRTAP12-3P60328 96 aa1.45□□□□□ -2.18
VPS35-203ENST00000562420 STARD9Q9P2P6 4700 aa1.45□□□□□ -2.18
VPS35-203ENST00000562420 DNAH2Q9P225 4427 aa1.44□□□□□ -2.18
VPS35-203ENST00000562420 DNAH10Q8IVF4 4471 aa1.43□□□□□ -2.18
VPS35-203ENST00000562420 C9orf92A6NGG3 77 aa1.43□□□□□ -2.18
VPS35-203ENST00000562420 FRAS1Q86XX4 4008 aa1.43□□□□□ -2.18
VPS35-203ENST00000562420 DNAH17Q9UFH2 4485 aa1.41□□□□□ -2.18
VPS35-203ENST00000562420 TNP1P09430 55 aa1.41□□□□□ -2.18
VPS35-203ENST00000562420 FAT2Q9NYQ8 4349 aa1.41□□□□□ -2.18
VPS35-203ENST00000562420 DNAH11Q96DT5 4516 aa1.4□□□□□ -2.18
VPS35-203ENST00000562420 VPS13BQ7Z7G8 4022 aa1.4□□□□□ -2.19
VPS35-203ENST00000562420 DNAH8Q96JB1 4490 aa1.4□□□□□ -2.19
VPS35-203ENST00000562420 DNAH5Q8TE73 4624 aa1.38□□□□□ -2.19
VPS35-203ENST00000562420 SACSQ9NZJ4 4579 aa1.38□□□□□ -2.19
VPS35-203ENST00000562420 LRP1BQ9NZR2 4599 aa1.37□□□□□ -2.19
VPS35-203ENST00000562420 PKHD1P08F94 4074 aa1.37□□□□□ -2.19
VPS35-203ENST00000562420 PKD1P98161 4303 aa1.36□□□□□ -2.19
VPS35-203ENST00000562420 KMT2CQ8NEZ4 4911 aaKnown RBP1.36□□□□□ -2.19
VPS35-203ENST00000562420 BIRC6Q9NR09 4857 aa1.35□□□□□ -2.19
VPS35-203ENST00000562420 HYDINQ4G0P3 5121 aa1.35□□□□□ -2.19
VPS35-203ENST00000562420 RYR3Q15413 4870 aa1.34□□□□□ -2.2
VPS35-203ENST00000562420 PKHD1L1Q86WI1 4243 aa1.33□□□□□ -2.2
VPS35-203ENST00000562420 DMBT1Q9UGM3 2413 aaPredicted RBP1.32□□□□□ -2.2
VPS35-203ENST00000562420 SRRM2Q9UQ35 2752 aaKnown RBP1.32□□□□□ -2.2
VPS35-203ENST00000562420 RYR1P21817 5038 aa1.32□□□□□ -2.2
VPS35-203ENST00000562420 APOBP04114 4563 aaKnown RBP1.32□□□□□ -2.2
VPS35-203ENST00000562420 DYNC1H1Q14204 4646 aaKnown RBP1.32□□□□□ -2.2
VPS35-203ENST00000562420 RYR2Q92736 4967 aa1.3□□□□□ -2.2
VPS35-203ENST00000562420 KRTAP10-4P60372 401 aaPredicted RBP1.3□□□□□ -2.2
VPS35-203ENST00000562420 HSPG2P98160 4391 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms