RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 INE1O15225 51 aa5.84□□□□□ -1.47
TRAF3-208ENST00000560371 DNAH9Q9NYC9 4486 aa5.82□□□□□ -1.48
TRAF3-208ENST00000560371 KRTAP12-3P60328 96 aa5.81□□□□□ -1.48
TRAF3-208ENST00000560371 KRTAP10-5P60370 271 aa5.77□□□□□ -1.49
TRAF3-208ENST00000560371 KMT2AQ03164 3969 aa5.71□□□□□ -1.5
TRAF3-208ENST00000560371 LYSTQ99698 3801 aa5.71□□□□□ -1.5
TRAF3-208ENST00000560371 LORP23490 312 aaPredicted RBP5.69□□□□□ -1.5
TRAF3-208ENST00000560371 LCE3AQ5TA76 89 aa5.69□□□□□ -1.5
TRAF3-208ENST00000560371 KRTAP8-1Q8IUC2 63 aa5.68□□□□□ -1.5
TRAF3-208ENST00000560371 DNAH2Q9P225 4427 aa5.68□□□□□ -1.5
TRAF3-208ENST00000560371 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
TRAF3-208ENST00000560371 VPS13BQ7Z7G8 4022 aa5.65□□□□□ -1.5
TRAF3-208ENST00000560371 PRKDCP78527 4128 aaKnown RBP5.64□□□□□ -1.51
TRAF3-208ENST00000560371 ANK2Q01484 3957 aa5.56□□□□□ -1.52
TRAF3-208ENST00000560371 DNAH5Q8TE73 4624 aa5.56□□□□□ -1.52
TRAF3-208ENST00000560371 DNAH3Q8TD57 4116 aa5.55□□□□□ -1.52
TRAF3-208ENST00000560371 DNAH11Q96DT5 4516 aa5.53□□□□□ -1.52
TRAF3-208ENST00000560371 DNAH10Q8IVF4 4471 aa5.52□□□□□ -1.53
TRAF3-208ENST00000560371 MT1HP80294 61 aa5.52□□□□□ -1.53
TRAF3-208ENST00000560371 KRTAP4-1Q9BYQ7 146 aa5.51□□□□□ -1.53
TRAF3-208ENST00000560371 PLECQ15149 4684 aaKnown RBP5.51□□□□□ -1.53
TRAF3-208ENST00000560371 FAT2Q9NYQ8 4349 aa5.5□□□□□ -1.53
TRAF3-208ENST00000560371 FRAS1Q86XX4 4008 aa5.43□□□□□ -1.54
TRAF3-208ENST00000560371 VPS13DQ5THJ4 4388 aa5.43□□□□□ -1.54
TRAF3-208ENST00000560371 CMYA5Q8N3K9 4069 aa5.42□□□□□ -1.54
TRAF3-208ENST00000560371 DNAH17Q9UFH2 4485 aa5.4□□□□□ -1.54
TRAF3-208ENST00000560371 STARD9Q9P2P6 4700 aa5.4□□□□□ -1.55
TRAF3-208ENST00000560371 MT2AP02795 61 aa5.39□□□□□ -1.55
TRAF3-208ENST00000560371 DNAH8Q96JB1 4490 aa5.39□□□□□ -1.55
TRAF3-208ENST00000560371 DYNC2H1Q8NCM8 4307 aaKnown RBP5.38□□□□□ -1.55
TRAF3-208ENST00000560371 SPRR2GQ9BYE4 73 aa5.37□□□□□ -1.55
TRAF3-208ENST00000560371 DNAH7Q8WXX0 4024 aa5.37□□□□□ -1.55
TRAF3-208ENST00000560371 DNHD1Q96M86 4753 aa5.36□□□□□ -1.55
TRAF3-208ENST00000560371 LRP1BQ9NZR2 4599 aa5.36□□□□□ -1.55
TRAF3-208ENST00000560371 DNAH6Q9C0G6 4158 aa5.32□□□□□ -1.56
TRAF3-208ENST00000560371 SPRR2FQ96RM1 72 aa5.31□□□□□ -1.56
TRAF3-208ENST00000560371 FAT1Q14517 4588 aa5.3□□□□□ -1.56
TRAF3-208ENST00000560371 HECTD4Q9Y4D8 3996 aa5.29□□□□□ -1.56
TRAF3-208ENST00000560371 MT1FP04733 61 aa5.28□□□□□ -1.56
TRAF3-208ENST00000560371 KRTAP10-7P60409 375 aaPredicted RBP5.26□□□□□ -1.57
TRAF3-208ENST00000560371 SACSQ9NZJ4 4579 aa5.16□□□□□ -1.58
TRAF3-208ENST00000560371 KRTAP19-5Q3LI72 72 aa5.15□□□□□ -1.58
TRAF3-208ENST00000560371 FAT3Q8TDW7 4589 aa5.14□□□□□ -1.59
TRAF3-208ENST00000560371 DYNC1H1Q14204 4646 aaKnown RBP5.09□□□□□ -1.59
TRAF3-208ENST00000560371 MYCBP2O75592 4640 aa5.09□□□□□ -1.6
TRAF3-208ENST00000560371 RYR1P21817 5038 aa5.08□□□□□ -1.6
TRAF3-208ENST00000560371 PKHD1P08F94 4074 aa5.06□□□□□ -1.6
TRAF3-208ENST00000560371 LCE3CQ5T5A8 94 aa5.04□□□□□ -1.6
TRAF3-208ENST00000560371 APOBP04114 4563 aaKnown RBP4.99□□□□□ -1.61
TRAF3-208ENST00000560371 SPRR2EP22531 72 aa4.98□□□□□ -1.61
TRAF3-208ENST00000560371 SPRR2BP35325 72 aa4.98□□□□□ -1.61
TRAF3-208ENST00000560371 SPRR2AP35326 72 aa4.98□□□□□ -1.61
TRAF3-208ENST00000560371 KRTAP19-4Q3LI73 84 aa4.98□□□□□ -1.61
TRAF3-208ENST00000560371 LRP1Q07954 4544 aaKnown RBP4.97□□□□□ -1.61
TRAF3-208ENST00000560371 KRTAP19-1Q8IUB9 90 aa4.95□□□□□ -1.62
TRAF3-208ENST00000560371 KRTAP19-8Q3LI54 63 aa4.94□□□□□ -1.62
TRAF3-208ENST00000560371 KRTAP17-1Q9BYP8 105 aa4.93□□□□□ -1.62
TRAF3-208ENST00000560371 LCE3BQ5TA77 95 aa4.88□□□□□ -1.63
TRAF3-208ENST00000560371 LCE2BO14633 110 aa4.83□□□□□ -1.64
TRAF3-208ENST00000560371 KRTAP9-8Q9BYQ0 159 aa4.83□□□□□ -1.64
TRAF3-208ENST00000560371 SPRR2DP22532 72 aa4.82□□□□□ -1.64
TRAF3-208ENST00000560371 HSPG2P98160 4391 aa4.82□□□□□ -1.64
TRAF3-208ENST00000560371 MT1XP80297 61 aa4.81□□□□□ -1.64
TRAF3-208ENST00000560371 RYR3Q15413 4870 aa4.79□□□□□ -1.64
TRAF3-208ENST00000560371 PKHD1L1Q86WI1 4243 aa4.76□□□□□ -1.65
TRAF3-208ENST00000560371 KRTAP12-4P60329 112 aa4.76□□□□□ -1.65
TRAF3-208ENST00000560371 MT1BP07438 61 aa4.75□□□□□ -1.65
TRAF3-208ENST00000560371 LRP2P98164 4655 aa4.74□□□□□ -1.65
TRAF3-208ENST00000560371 PKD1P98161 4303 aa4.73□□□□□ -1.65
TRAF3-208ENST00000560371 FLGP20930 4061 aaPredicted RBP4.71□□□□□ -1.66
TRAF3-208ENST00000560371 MT1GP13640 62 aa4.7□□□□□ -1.66
TRAF3-208ENST00000560371 KRTAP4-8A0A0G2JLE6 195 aa4.69□□□□□ -1.66
TRAF3-208ENST00000560371 KRTAP9-3Q9BYQ3 159 aa4.69□□□□□ -1.66
TRAF3-208ENST00000560371 KRTAP4-8Q9BYQ9 185 aa4.69□□□□□ -1.66
TRAF3-208ENST00000560371 LCE2CQ5TA81 110 aa4.68□□□□□ -1.66
TRAF3-208ENST00000560371 LPAP08519 4548 aa4.66□□□□□ -1.66
TRAF3-208ENST00000560371 KIAA1109Q2LD37 5005 aa4.63□□□□□ -1.67
TRAF3-208ENST00000560371 TNXBP22105 4242 aa4.55□□□□□ -1.68
TRAF3-208ENST00000560371 HERC2O95714 4834 aa4.51□□□□□ -1.69
TRAF3-208ENST00000560371 KRTAP19-3Q7Z4W3 81 aa4.49□□□□□ -1.69
TRAF3-208ENST00000560371 LCE3DQ9BYE3 92 aa4.45□□□□□ -1.7
TRAF3-208ENST00000560371 LCE2DQ5TA82 110 aaPredicted RBP4.44□□□□□ -1.7
TRAF3-208ENST00000560371 KRTAP9-2Q9BYQ4 174 aa4.44□□□□□ -1.7
TRAF3-208ENST00000560371 SPRR5A0A1B0GTR4 108 aa4.43□□□□□ -1.7
TRAF3-208ENST00000560371 HYDINQ4G0P3 5121 aa4.41□□□□□ -1.7
TRAF3-208ENST00000560371 RYR2Q92736 4967 aa4.41□□□□□ -1.7
TRAF3-208ENST00000560371 MT1LQ93083 61 aa4.39□□□□□ -1.71
TRAF3-208ENST00000560371 KRTAP19-2Q3LHN2 52 aa4.38□□□□□ -1.71
TRAF3-208ENST00000560371 PCLOQ9Y6V0 5065 aa4.38□□□□□ -1.71
TRAF3-208ENST00000560371 MT4P47944 62 aa4.37□□□□□ -1.71
TRAF3-208ENST00000560371 LCE3EQ5T5B0 92 aa4.36□□□□□ -1.71
TRAF3-208ENST00000560371 MT1EP04732 61 aa4.36□□□□□ -1.71
TRAF3-208ENST00000560371 KRTAP4-7Q9BYR0 210 aa4.32□□□□□ -1.72
TRAF3-208ENST00000560371 KRTAP19-6Q3LI70 58 aa4.31□□□□□ -1.72
TRAF3-208ENST00000560371 LCE1BQ5T7P3 118 aa4.28□□□□□ -1.72
TRAF3-208ENST00000560371 KMT2CQ8NEZ4 4911 aaKnown RBP4.26□□□□□ -1.73
TRAF3-208ENST00000560371 MT1MQ8N339 61 aa4.23□□□□□ -1.73
TRAF3-208ENST00000560371 SYNE1Q8NF91 8797 aaKnown RBP4.23□□□□□ -1.73
TRAF3-208ENST00000560371 MT3P25713 68 aa4.2□□□□□ -1.74
TRAF3-208ENST00000560371 LCE1DQ5T752 114 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms