RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 VPS13DQ5THJ4 4388 aa2.16□□□□□ -2.06
PRPF39-212ENST00000557477 IGLV10-54A0A075B6I4 117 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 A0A1B0GU33 70 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 TRBV6-4A0A1B0GX49 114 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 C1orf137Q5JT78 98 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 DEFB104AQ8WTQ1 72 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 CDKN2A-AS1Q9UH64 79 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 DNAH2Q9P225 4427 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 FAT2Q9NYQ8 4349 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 HSPG2P98160 4391 aa2.15□□□□□ -2.07
PRPF39-212ENST00000557477 DNAH11Q96DT5 4516 aa2.14□□□□□ -2.07
PRPF39-212ENST00000557477 A0A087WTM6 91 aa2.14□□□□□ -2.07
PRPF39-212ENST00000557477 LINC00959A0A1B0GUT2 108 aa2.14□□□□□ -2.07
PRPF39-212ENST00000557477 UQCR11O14957 56 aa2.14□□□□□ -2.07
PRPF39-212ENST00000557477 RNASE3P12724 160 aaKnown RBP2.14□□□□□ -2.07
PRPF39-212ENST00000557477 LINC00158P58513 81 aa2.14□□□□□ -2.07
PRPF39-212ENST00000557477 LINC00575Q6W349 94 aa2.14□□□□□ -2.07
PRPF39-212ENST00000557477 DMAC1Q96GE9 116 aa2.14□□□□□ -2.07
PRPF39-212ENST00000557477 HERC1Q15751 4861 aa2.13□□□□□ -2.07
PRPF39-212ENST00000557477 DNAH6Q9C0G6 4158 aa2.13□□□□□ -2.07
PRPF39-212ENST00000557477 TRGV1A0A0A0MS02 117 aa2.13□□□□□ -2.07
PRPF39-212ENST00000557477 C9orf163Q8N9P6 203 aa2.13□□□□□ -2.07
PRPF39-212ENST00000557477 SPRR4Q96PI1 79 aa2.13□□□□□ -2.07
PRPF39-212ENST00000557477 PKD1P98161 4303 aa2.13□□□□□ -2.07
PRPF39-212ENST00000557477 DYNC1H1Q14204 4646 aaKnown RBP2.12□□□□□ -2.07
PRPF39-212ENST00000557477 M0QY20 66 aa2.12□□□□□ -2.07
PRPF39-212ENST00000557477 Q6ZQY7 126 aa2.12□□□□□ -2.07
PRPF39-212ENST00000557477 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.11□□□□□ -2.07
PRPF39-212ENST00000557477 H3BNG1 76 aa2.1□□□□□ -2.07
PRPF39-212ENST00000557477 RPL37AP61513 92 aaKnown RBP2.1□□□□□ -2.07
PRPF39-212ENST00000557477 KRTAP26-1Q6PEX3 210 aa2.1□□□□□ -2.07
PRPF39-212ENST00000557477 Q6ZRN7 208 aaPredicted RBP2.1□□□□□ -2.07
PRPF39-212ENST00000557477 WFDC10BQ8IUB3 73 aa2.1□□□□□ -2.07
PRPF39-212ENST00000557477 KRTAP13-1Q8IUC0 172 aa2.1□□□□□ -2.07
PRPF39-212ENST00000557477 FLG2Q5D862 2391 aaPredicted RBP2.1□□□□□ -2.07
PRPF39-212ENST00000557477 A8MTW9 85 aa2.09□□□□□ -2.07
PRPF39-212ENST00000557477 COX6A2Q02221 97 aa2.09□□□□□ -2.07
PRPF39-212ENST00000557477 KRTAP6-3Q3LI67 103 aa2.09□□□□□ -2.07
PRPF39-212ENST00000557477 PRO0255Q9UI72 69 aa2.09□□□□□ -2.07
PRPF39-212ENST00000557477 APOBP04114 4563 aaKnown RBP2.08□□□□□ -2.08
PRPF39-212ENST00000557477 LRP1BQ9NZR2 4599 aa2.08□□□□□ -2.08
PRPF39-212ENST00000557477 UBR4Q5T4S7 5183 aa2.08□□□□□ -2.08
PRPF39-212ENST00000557477 MYCBP2O75592 4640 aa2.08□□□□□ -2.08
PRPF39-212ENST00000557477 IGKV3OR2-268A0A0C4DH90 116 aa2.08□□□□□ -2.08
PRPF39-212ENST00000557477 A0A1B0GU69 56 aa2.08□□□□□ -2.08
PRPF39-212ENST00000557477 Q8IZM0 81 aa2.08□□□□□ -2.08
PRPF39-212ENST00000557477 DNAH17Q9UFH2 4485 aa2.08□□□□□ -2.08
PRPF39-212ENST00000557477 SRRM2Q9UQ35 2752 aaKnown RBP2.07□□□□□ -2.08
PRPF39-212ENST00000557477 DNAH5Q8TE73 4624 aa2.07□□□□□ -2.08
PRPF39-212ENST00000557477 COX17Q14061 63 aa2.06□□□□□ -2.08
PRPF39-212ENST00000557477 K7EQZ3 153 aa2.05□□□□□ -2.08
PRPF39-212ENST00000557477 LINC01556Q5JQF7 62 aa2.05□□□□□ -2.08
PRPF39-212ENST00000557477 LINC00472Q9H8W2 130 aa2.05□□□□□ -2.08
PRPF39-212ENST00000557477 TOMM7Q9P0U1 55 aa2.05□□□□□ -2.08
PRPF39-212ENST00000557477 LELP1Q5T871 98 aa2.03□□□□□ -2.08
PRPF39-212ENST00000557477 WFDC13Q8IUB5 93 aa2.03□□□□□ -2.08
PRPF39-212ENST00000557477 FAT1Q14517 4588 aa2.02□□□□□ -2.09
PRPF39-212ENST00000557477 IGLV5-48A0A075B6I7 105 aa2.02□□□□□ -2.09
PRPF39-212ENST00000557477 KRTAP12-3P60328 96 aa2.02□□□□□ -2.09
PRPF39-212ENST00000557477 CLPSL2Q6UWE3 100 aa2.02□□□□□ -2.09
PRPF39-212ENST00000557477 Q6ZSA8 131 aa2.02□□□□□ -2.09
PRPF39-212ENST00000557477 VPS13BQ7Z7G8 4022 aa2.01□□□□□ -2.09
PRPF39-212ENST00000557477 ANGP03950 147 aaKnown RBP2.01□□□□□ -2.09
PRPF39-212ENST00000557477 ACYP2P14621 99 aa2.01□□□□□ -2.09
PRPF39-212ENST00000557477 PCOTHQ58A44 107 aa2.01□□□□□ -2.09
PRPF39-212ENST00000557477 TP53AIP1Q9HCN2 124 aa2.01□□□□□ -2.09
PRPF39-212ENST00000557477 HMCN2Q8NDA2 5059 aa2□□□□□ -2.09
PRPF39-212ENST00000557477 Q96NJ1 140 aa1.99□□□□□ -2.09
PRPF39-212ENST00000557477 MT1HL1P0DM35 61 aa1.98□□□□□ -2.09
PRPF39-212ENST00000557477 KRTAP10-4P60372 401 aaPredicted RBP1.98□□□□□ -2.09
PRPF39-212ENST00000557477 C6orf48Q9UBA6 75 aa1.98□□□□□ -2.09
PRPF39-212ENST00000557477 SSBP3-AS1Q7Z2R9 100 aa1.97□□□□□ -2.09
PRPF39-212ENST00000557477 SPACA4Q8TDM5 124 aa1.96□□□□□ -2.1
PRPF39-212ENST00000557477 LRP1Q07954 4544 aaKnown RBP1.96□□□□□ -2.1
PRPF39-212ENST00000557477 SPINK6Q6UWN8 80 aa1.95□□□□□ -2.1
PRPF39-212ENST00000557477 RNF213Q63HN8 5207 aa1.94□□□□□ -2.1
PRPF39-212ENST00000557477 LRP2P98164 4655 aa1.94□□□□□ -2.1
PRPF39-212ENST00000557477 A0A096LNI7 61 aa1.93□□□□□ -2.1
PRPF39-212ENST00000557477 A0A0G2JQZ4 141 aa1.93□□□□□ -2.1
PRPF39-212ENST00000557477 MMP24-AS1A0A0U1RRL7 71 aa1.93□□□□□ -2.1
PRPF39-212ENST00000557477 PSORS1C2Q9UIG4 136 aa1.93□□□□□ -2.1
PRPF39-212ENST00000557477 FAT3Q8TDW7 4589 aa1.92□□□□□ -2.1
PRPF39-212ENST00000557477 PKHD1L1Q86WI1 4243 aa1.92□□□□□ -2.1
PRPF39-212ENST00000557477 GVQW2A0A096LPI5 108 aaPredicted RBP1.92□□□□□ -2.1
PRPF39-212ENST00000557477 DEFB105AQ8NG35 78 aa1.92□□□□□ -2.1
PRPF39-212ENST00000557477 PRO2289Q9P1D8 64 aa1.91□□□□□ -2.1
PRPF39-212ENST00000557477 KRTAP12-4P60329 112 aa1.9□□□□□ -2.11
PRPF39-212ENST00000557477 Q6ZRX8 168 aa1.89□□□□□ -2.11
PRPF39-212ENST00000557477 CRIPTQ9P021 101 aa1.89□□□□□ -2.11
PRPF39-212ENST00000557477 H0YAA0 97 aa1.88□□□□□ -2.11
PRPF39-212ENST00000557477 KRTAP12-1P59990 96 aa1.88□□□□□ -2.11
PRPF39-212ENST00000557477 TPRXLQ17RH7 258 aa1.88□□□□□ -2.11
PRPF39-212ENST00000557477 UNQ6190/PRO20217Q6UXQ8 127 aa1.88□□□□□ -2.11
PRPF39-212ENST00000557477 MRPL34Q9BQ48 92 aaKnown RBP1.88□□□□□ -2.11
PRPF39-212ENST00000557477 DNAH8Q96JB1 4490 aa1.88□□□□□ -2.11
PRPF39-212ENST00000557477 TNXBP22105 4242 aa1.88□□□□□ -2.11
PRPF39-212ENST00000557477 KRTAP5-7Q6L8G8 165 aa1.87□□□□□ -2.11
PRPF39-212ENST00000557477 LPAP08519 4548 aa1.87□□□□□ -2.11
PRPF39-212ENST00000557477 CRCT1Q9UGL9 99 aa1.85□□□□□ -2.11
PRPF39-212ENST00000557477 SPRR1AP35321 89 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms