RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 MXRA5Q9NR99 2828 aa2.86□□□□□ -1.95
TDP1-215ENST00000556498 SETXQ7Z333 2677 aaKnown RBP2.86□□□□□ -1.95
TDP1-215ENST00000556498 ATRQ13535 2644 aa2.84□□□□□ -1.95
TDP1-215ENST00000556498 CUBNO60494 3623 aa2.84□□□□□ -1.96
TDP1-215ENST00000556498 CELSR1Q9NYQ6 3014 aa2.84□□□□□ -1.96
TDP1-215ENST00000556498 SETD2Q9BYW2 2564 aaPredicted RBP2.82□□□□□ -1.96
TDP1-215ENST00000556498 TEP1Q99973 2627 aaKnown RBP2.81□□□□□ -1.96
TDP1-215ENST00000556498 KRTAP9-6A8MVA2 160 aa2.81□□□□□ -1.96
TDP1-215ENST00000556498 MAST4O15021 2626 aa2.81□□□□□ -1.96
TDP1-215ENST00000556498 MAP1AP78559 2803 aaPredicted RBP2.8□□□□□ -1.96
TDP1-215ENST00000556498 FBN1P35555 2871 aaKnown RBP2.8□□□□□ -1.96
TDP1-215ENST00000556498 COL6A5A8TX70 2615 aa2.78□□□□□ -1.96
TDP1-215ENST00000556498 LCE3EQ5T5B0 92 aa2.77□□□□□ -1.97
TDP1-215ENST00000556498 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.76□□□□□ -1.97
TDP1-215ENST00000556498 NF1P21359 2839 aa2.75□□□□□ -1.97
TDP1-215ENST00000556498 STAB1Q9NY15 2570 aa2.75□□□□□ -1.97
TDP1-215ENST00000556498 TRRAPQ9Y4A5 3859 aa2.75□□□□□ -1.97
TDP1-215ENST00000556498 MGAM2Q2M2H8 2515 aa2.74□□□□□ -1.97
TDP1-215ENST00000556498 NIPBLQ6KC79 2804 aaeCLIP2.73□□□□□ -1.97
TDP1-215ENST00000556498 ANK2Q01484 3957 aa2.73□□□□□ -1.97
TDP1-215ENST00000556498 TENM1Q9UKZ4 2725 aa2.72□□□□□ -1.97
TDP1-215ENST00000556498 HUWE1Q7Z6Z7 4374 aaKnown RBP2.7□□□□□ -1.98
TDP1-215ENST00000556498 DNAH3Q8TD57 4116 aa2.7□□□□□ -1.98
TDP1-215ENST00000556498 RPS29P62273 56 aaKnown RBP2.7□□□□□ -1.98
TDP1-215ENST00000556498 VWFP04275 2813 aa2.68□□□□□ -1.98
TDP1-215ENST00000556498 NOTCH1P46531 2555 aa2.67□□□□□ -1.98
TDP1-215ENST00000556498 CMYA5Q8N3K9 4069 aa2.67□□□□□ -1.98
TDP1-215ENST00000556498 DNAH9Q9NYC9 4486 aa2.66□□□□□ -1.98
TDP1-215ENST00000556498 DNHD1Q96M86 4753 aa2.64□□□□□ -1.99
TDP1-215ENST00000556498 NBEAL2Q6ZNJ1 2754 aa2.63□□□□□ -1.99
TDP1-215ENST00000556498 NBEAL1Q6ZS30 2694 aa2.61□□□□□ -1.99
TDP1-215ENST00000556498 TENM3Q9P273 2699 aa2.61□□□□□ -1.99
TDP1-215ENST00000556498 SRRM2Q9UQ35 2752 aaKnown RBP2.61□□□□□ -1.99
TDP1-215ENST00000556498 TNP1P09430 55 aa2.6□□□□□ -1.99
TDP1-215ENST00000556498 FBN3Q75N90 2809 aa2.6□□□□□ -1.99
TDP1-215ENST00000556498 STAB2Q8WWQ8 2551 aa2.59□□□□□ -1.99
TDP1-215ENST00000556498 KRTAP10-10P60014 251 aa2.59□□□□□ -1.99
TDP1-215ENST00000556498 PKD1L1Q8TDX9 2849 aa2.59□□□□□ -2
TDP1-215ENST00000556498 PRKDCP78527 4128 aaKnown RBP2.58□□□□□ -2
TDP1-215ENST00000556498 KRTAP10-1P60331 282 aa2.58□□□□□ -2
TDP1-215ENST00000556498 DYNC2H1Q8NCM8 4307 aaKnown RBP2.58□□□□□ -2
TDP1-215ENST00000556498 MEGF8Q7Z7M0 2845 aa2.55□□□□□ -2
TDP1-215ENST00000556498 DNAH1Q9P2D7 4330 aa2.54□□□□□ -2
TDP1-215ENST00000556498 VPS13DQ5THJ4 4388 aa2.52□□□□□ -2.01
TDP1-215ENST00000556498 C9orf92A6NGG3 77 aa2.52□□□□□ -2.01
TDP1-215ENST00000556498 STARD9Q9P2P6 4700 aa2.51□□□□□ -2.01
TDP1-215ENST00000556498 DNAH7Q8WXX0 4024 aa2.51□□□□□ -2.01
TDP1-215ENST00000556498 DNAH6Q9C0G6 4158 aa2.51□□□□□ -2.01
TDP1-215ENST00000556498 PLECQ15149 4684 aaKnown RBP2.51□□□□□ -2.01
TDP1-215ENST00000556498 DMBT1Q9UGM3 2413 aaPredicted RBP2.48□□□□□ -2.01
TDP1-215ENST00000556498 SMR3BP02814 79 aaPredicted RBP2.48□□□□□ -2.01
TDP1-215ENST00000556498 DNAH17Q9UFH2 4485 aa2.47□□□□□ -2.01
TDP1-215ENST00000556498 COL7A1Q02388 2944 aa2.46□□□□□ -2.02
TDP1-215ENST00000556498 CSMD3Q7Z407 3707 aa2.46□□□□□ -2.02
TDP1-215ENST00000556498 KMT2AQ03164 3969 aa2.46□□□□□ -2.02
TDP1-215ENST00000556498 KRTAP10-4P60372 401 aaPredicted RBP2.45□□□□□ -2.02
TDP1-215ENST00000556498 DNAH10Q8IVF4 4471 aa2.45□□□□□ -2.02
TDP1-215ENST00000556498 DNAH2Q9P225 4427 aa2.44□□□□□ -2.02
TDP1-215ENST00000556498 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
TDP1-215ENST00000556498 SACSQ9NZJ4 4579 aa2.42□□□□□ -2.02
TDP1-215ENST00000556498 FAT2Q9NYQ8 4349 aa2.41□□□□□ -2.02
TDP1-215ENST00000556498 LYSTQ99698 3801 aa2.41□□□□□ -2.02
TDP1-215ENST00000556498 DNAH11Q96DT5 4516 aa2.4□□□□□ -2.03
TDP1-215ENST00000556498 DNAH8Q96JB1 4490 aa2.4□□□□□ -2.03
TDP1-215ENST00000556498 RYR2Q92736 4967 aa2.39□□□□□ -2.03
TDP1-215ENST00000556498 HYDINQ4G0P3 5121 aa2.39□□□□□ -2.03
TDP1-215ENST00000556498 TGP01266 2768 aa2.38□□□□□ -2.03
TDP1-215ENST00000556498 LCE3AQ5TA76 89 aa2.37□□□□□ -2.03
TDP1-215ENST00000556498 LRP1BQ9NZR2 4599 aa2.37□□□□□ -2.03
TDP1-215ENST00000556498 DNAH5Q8TE73 4624 aa2.37□□□□□ -2.03
TDP1-215ENST00000556498 DYNC1H1Q14204 4646 aaKnown RBP2.35□□□□□ -2.03
TDP1-215ENST00000556498 FRAS1Q86XX4 4008 aa2.35□□□□□ -2.03
TDP1-215ENST00000556498 PKD1P98161 4303 aa2.33□□□□□ -2.04
TDP1-215ENST00000556498 KMT2CQ8NEZ4 4911 aaKnown RBP2.33□□□□□ -2.04
TDP1-215ENST00000556498 MT1HL1P0DM35 61 aa2.33□□□□□ -2.04
TDP1-215ENST00000556498 LCE3DQ9BYE3 92 aa2.32□□□□□ -2.04
TDP1-215ENST00000556498 HECTD4Q9Y4D8 3996 aa2.32□□□□□ -2.04
TDP1-215ENST00000556498 APOBP04114 4563 aaKnown RBP2.31□□□□□ -2.04
TDP1-215ENST00000556498 MYCBP2O75592 4640 aa2.3□□□□□ -2.04
TDP1-215ENST00000556498 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.04
TDP1-215ENST00000556498 HSPG2P98160 4391 aa2.28□□□□□ -2.04
TDP1-215ENST00000556498 RYR3Q15413 4870 aa2.28□□□□□ -2.04
TDP1-215ENST00000556498 VPS13BQ7Z7G8 4022 aa2.28□□□□□ -2.04
TDP1-215ENST00000556498 PKHD1P08F94 4074 aa2.27□□□□□ -2.05
TDP1-215ENST00000556498 M0R2T5 61 aa2.27□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP5-4Q6L8H1 288 aa2.27□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP8-1Q8IUC2 63 aa2.27□□□□□ -2.05
TDP1-215ENST00000556498 RYR1P21817 5038 aa2.27□□□□□ -2.05
TDP1-215ENST00000556498 FAT1Q14517 4588 aa2.26□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP6-3Q3LI67 103 aa2.26□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP12-4P60329 112 aa2.25□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP2-3P0C7H8 128 aa2.24□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP2-4Q9BYR9 128 aa2.24□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP2-1Q9BYU5 128 aa2.24□□□□□ -2.05
TDP1-215ENST00000556498 KRTAP5-9P26371 169 aa2.23□□□□□ -2.05
TDP1-215ENST00000556498 KIAA1109Q2LD37 5005 aa2.23□□□□□ -2.05
TDP1-215ENST00000556498 PKHD1L1Q86WI1 4243 aa2.23□□□□□ -2.05
TDP1-215ENST00000556498 BIRC6Q9NR09 4857 aa2.23□□□□□ -2.05
TDP1-215ENST00000556498 EPPK1P58107 5090 aaKnown RBP2.21□□□□□ -2.06
TDP1-215ENST00000556498 KRTAP5-5Q701N2 237 aaPredicted RBP2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms