RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	MUSTN1	Q8IVN3	82 aa		0.73	□□□□□ -2.29
PTCH1-223	ENST00000551623	ANKRD29	Q8N6D5	301 aa		0.73	□□□□□ -2.29
PTCH1-223	ENST00000551623	C1orf64	Q8NEQ6	169 aa		0.73	□□□□□ -2.29
PTCH1-223	ENST00000551623	TTTY13	Q9BZ97	58 aa		0.73	□□□□□ -2.29
PTCH1-223	ENST00000551623		H0YGX0	51 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623		H3BQ85	93 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623	SNCG	O76070	127 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623	KRTAP19-5	Q3LI72	72 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623	LINC01545	Q5VT33	79 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623	SCGB1D4	Q6XE38	83 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623		Q6ZQT0	140 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623	PMCHL2	Q9BQD1	86 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623		R4GN34	69 aa		0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623	SYNE1	Q8NF91	8797 aa	Known RBP	0.72	□□□□□ -2.29
PTCH1-223	ENST00000551623	hDV103S1	A0JD37	113 aa		0.71	□□□□□ -2.3
PTCH1-223	ENST00000551623	HCG22	E2RYF7	251 aa		0.71	□□□□□ -2.3
PTCH1-223	ENST00000551623		H0Y8G0	127 aa		0.71	□□□□□ -2.3
PTCH1-223	ENST00000551623	SYS1-DBNDD2	H3BUS1	97 aa		0.71	□□□□□ -2.3
PTCH1-223	ENST00000551623	ADM2	Q7Z4H4	148 aa		0.71	□□□□□ -2.3
PTCH1-223	ENST00000551623		A0A087WVE0	104 aa		0.7	□□□□□ -2.3
PTCH1-223	ENST00000551623	COA6	Q5JTJ3	125 aa	Known RBP	0.7	□□□□□ -2.3
PTCH1-223	ENST00000551623	C20orf197	Q8N268	126 aa		0.7	□□□□□ -2.3
PTCH1-223	ENST00000551623	YPEL4	Q96NS1	127 aa		0.7	□□□□□ -2.3
PTCH1-223	ENST00000551623	TMEM218	A2RU14	115 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623	TMEM256-PLSCR3	K7ERE1	68 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623		M0QZ58	72 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623	NDUFC1	O43677	76 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623	SNAPIN	O95295	136 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623		P0C880	135 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623	FABP2	P12104	132 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623	FABP4	P15090	132 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623	HIST1H4G	Q99525	98 aa		0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623	NAA38	Q9BRA0	125 aa	Known RBP	0.69	□□□□□ -2.3
PTCH1-223	ENST00000551623		A0A0B4J2C4	111 aa		0.67	□□□□□ -2.3
PTCH1-223	ENST00000551623	NDUFS5	O43920	106 aa		0.67	□□□□□ -2.3
PTCH1-223	ENST00000551623	CAMK2N1	Q7Z7J9	78 aa		0.67	□□□□□ -2.3
PTCH1-223	ENST00000551623	ORMDL1	Q9P0S3	153 aa		0.67	□□□□□ -2.3
PTCH1-223	ENST00000551623	LOC110117498	A0A087WWA1	95 aa		0.66	□□□□□ -2.3
PTCH1-223	ENST00000551623		A0A0D9SG42	100 aa		0.66	□□□□□ -2.3
PTCH1-223	ENST00000551623	CLLU1	Q5K131	121 aa		0.66	□□□□□ -2.3
PTCH1-223	ENST00000551623		C9JAW5	83 aa		0.65	□□□□□ -2.31
PTCH1-223	ENST00000551623	MT1A	P04731	61 aa		0.65	□□□□□ -2.31
PTCH1-223	ENST00000551623	KRTAP6-2	Q3LI66	62 aa		0.65	□□□□□ -2.31
PTCH1-223	ENST00000551623	LINC01554	Q52M75	96 aa		0.65	□□□□□ -2.31
PTCH1-223	ENST00000551623	CASC2	Q6XLA1	102 aa		0.65	□□□□□ -2.31
PTCH1-223	ENST00000551623	VPS25	Q9BRG1	176 aa		0.65	□□□□□ -2.31
PTCH1-223	ENST00000551623	CYP4F30P	Q9H0H9	118 aa		0.65	□□□□□ -2.31
PTCH1-223	ENST00000551623		A0A1B0GV72	72 aa		0.64	□□□□□ -2.31
PTCH1-223	ENST00000551623	DNAL4	O96015	105 aa		0.64	□□□□□ -2.31
PTCH1-223	ENST00000551623	KRTAP6-1	Q3LI64	71 aa		0.64	□□□□□ -2.31
PTCH1-223	ENST00000551623	C10orf95	Q9H7T3	257 aa		0.64	□□□□□ -2.31
PTCH1-223	ENST00000551623		A0A1W2PPM0	123 aa		0.63	□□□□□ -2.31
PTCH1-223	ENST00000551623	TP53AIP1	Q9HCN2	124 aa		0.63	□□□□□ -2.31
PTCH1-223	ENST00000551623	PRO1854	Q9UHT4	67 aa		0.63	□□□□□ -2.31
PTCH1-223	ENST00000551623	JMJD7-PLA2G4B	H0Y9G9	81 aa		0.62	□□□□□ -2.31
PTCH1-223	ENST00000551623	DLEU1	O43261	78 aa		0.62	□□□□□ -2.31
PTCH1-223	ENST00000551623	NREP	Q16612	68 aa		0.62	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST3H2BB	Q8N257	126 aa		0.62	□□□□□ -2.31
PTCH1-223	ENST00000551623	SVBP	Q8N300	66 aa		0.62	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BL	Q99880	126 aa		0.62	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIGD1B	Q9P298	99 aa		0.62	□□□□□ -2.31
PTCH1-223	ENST00000551623	LOC101927531	A0A1B0GV80	90 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BK	O60814	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	MT-ATP8	P03928	68 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BJ	P06899	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BO	P23527	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BB	P33778	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BD	P58876	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	KRTDAP	P60985	99 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BC	P62807	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	BATF	Q16520	125 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST2H2BE	Q16778	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	ATOH7	Q8N100	152 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BH	Q93079	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BN	Q99877	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	HIST1H2BM	Q99879	126 aa		0.61	□□□□□ -2.31
PTCH1-223	ENST00000551623	TRAV22	A0A0B4J277	110 aa		0.6	□□□□□ -2.31
PTCH1-223	ENST00000551623	PHGR1	C9JFL3	82 aa		0.6	□□□□□ -2.31
PTCH1-223	ENST00000551623	BPY2	O14599	106 aa		0.6	□□□□□ -2.31
PTCH1-223	ENST00000551623	ACYP1	P07311	99 aa		0.6	□□□□□ -2.31
PTCH1-223	ENST00000551623	MUC16	Q8WXI7	14507 aa		0.59	□□□□□ -2.31
PTCH1-223	ENST00000551623		K7EP34	96 aa		0.59	□□□□□ -2.31
PTCH1-223	ENST00000551623	APOC3	P02656	99 aa		0.59	□□□□□ -2.31
PTCH1-223	ENST00000551623	COX6C	P09669	75 aa		0.59	□□□□□ -2.31
PTCH1-223	ENST00000551623	COX8A	P10176	69 aa		0.59	□□□□□ -2.31
PTCH1-223	ENST00000551623	BAALC-AS2	P0C853	105 aa		0.58	□□□□□ -2.32
PTCH1-223	ENST00000551623	NDUFA5	Q16718	116 aa		0.58	□□□□□ -2.32
PTCH1-223	ENST00000551623	C14orf132	Q9NPU4	83 aa		0.58	□□□□□ -2.32
PTCH1-223	ENST00000551623	HSBP1L1	C9JCN9	74 aa		0.57	□□□□□ -2.32
PTCH1-223	ENST00000551623	FXYD2	P54710	66 aa		0.57	□□□□□ -2.32
PTCH1-223	ENST00000551623	KRTAP13-4	Q3LI77	160 aa		0.57	□□□□□ -2.32
PTCH1-223	ENST00000551623	PSMB2	P49721	201 aa		0.56	□□□□□ -2.32
PTCH1-223	ENST00000551623	ATOX1	O00244	68 aa		0.55	□□□□□ -2.32
PTCH1-223	ENST00000551623	DMAC1	Q96GE9	116 aa		0.55	□□□□□ -2.32
PTCH1-223	ENST00000551623	VAMP8	Q9BV40	100 aa		0.55	□□□□□ -2.32
PTCH1-223	ENST00000551623	ATXN8	Q156A1	80 aa		0.54	□□□□□ -2.32
PTCH1-223	ENST00000551623	TRAV7	A0A075B6U4	112 aa		0.53	□□□□□ -2.32
PTCH1-223	ENST00000551623		K7ERJ3	54 aa		0.53	□□□□□ -2.32
PTCH1-223	ENST00000551623	TNP1	P09430	55 aa		0.53	□□□□□ -2.32

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