RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 NCMAPQ5T1S8 102 aa-0.32□□□□□ -2.46
CD44-238ENST00000534296 CDKN2A-AS1Q9UH64 79 aa-0.32□□□□□ -2.46
CD44-238ENST00000534296 H0YGG7 62 aa-0.33□□□□□ -2.46
CD44-238ENST00000534296 C9orf62Q8N4C0 152 aa-0.33□□□□□ -2.46
CD44-238ENST00000534296 MRPL34Q9BQ48 92 aaKnown RBP-0.33□□□□□ -2.46
CD44-238ENST00000534296 DPY30Q9C005 99 aa-0.33□□□□□ -2.46
CD44-238ENST00000534296 IQGAP3Q86VI3 1631 aa-0.34□□□□□ -2.46
CD44-238ENST00000534296 STATHP02808 62 aa-0.34□□□□□ -2.46
CD44-238ENST00000534296 SMIM11AP58511 58 aa-0.34□□□□□ -2.46
CD44-238ENST00000534296 RPL38P63173 70 aaKnown RBP-0.34□□□□□ -2.46
CD44-238ENST00000534296 PPLO60437 1756 aa-0.34□□□□□ -2.46
CD44-238ENST00000534296 CEP162Q5TB80 1403 aa-0.35□□□□□ -2.47
CD44-238ENST00000534296 MT1EP04732 61 aa-0.35□□□□□ -2.47
CD44-238ENST00000534296 DEFB112Q30KQ8 113 aa-0.35□□□□□ -2.47
CD44-238ENST00000534296 NMSQ5H8A3 153 aa-0.35□□□□□ -2.47
CD44-238ENST00000534296 SNHG12Q9BXW3 62 aa-0.35□□□□□ -2.47
CD44-238ENST00000534296 HIGD1BQ9P298 99 aa-0.35□□□□□ -2.47
CD44-238ENST00000534296 CCNB3Q8WWL7 1395 aa-0.36□□□□□ -2.47
CD44-238ENST00000534296 TFF3Q07654 80 aa-0.37□□□□□ -2.47
CD44-238ENST00000534296 M0R143 59 aa-0.38□□□□□ -2.47
CD44-238ENST00000534296 MT1AP04731 61 aa-0.38□□□□□ -2.47
CD44-238ENST00000534296 IGLC2P0DOY2 106 aa-0.38□□□□□ -2.47
CD44-238ENST00000534296 IGLC3P0DOY3 106 aa-0.38□□□□□ -2.47
CD44-238ENST00000534296 WFDC9Q8NEX5 89 aa-0.38□□□□□ -2.47
CD44-238ENST00000534296 F8WEM9 126 aa-0.39□□□□□ -2.47
CD44-238ENST00000534296 CYB5AP00167 134 aa-0.4□□□□□ -2.47
CD44-238ENST00000534296 WFDC13Q8IUB5 93 aa-0.4□□□□□ -2.47
CD44-238ENST00000534296 UBE2D4Q9Y2X8 147 aa-0.4□□□□□ -2.47
CD44-238ENST00000534296 S100A8P05109 93 aa-0.41□□□□□ -2.48
CD44-238ENST00000534296 RPS29P62273 56 aaKnown RBP-0.41□□□□□ -2.48
CD44-238ENST00000534296 PEA15Q15121 130 aa-0.41□□□□□ -2.48
CD44-238ENST00000534296 C20orf78Q9BR46 151 aa-0.41□□□□□ -2.48
CD44-238ENST00000534296 GYPAP02724 150 aa-0.42□□□□□ -2.48
CD44-238ENST00000534296 DEFA5Q01523 94 aa-0.42□□□□□ -2.48
CD44-238ENST00000534296 PKIAP61925 76 aa-0.43□□□□□ -2.48
CD44-238ENST00000534296 MT1XP80297 61 aa-0.43□□□□□ -2.48
CD44-238ENST00000534296 PLGLAQ15195 96 aa-0.43□□□□□ -2.48
CD44-238ENST00000534296 MT1LQ93083 61 aa-0.43□□□□□ -2.48
CD44-238ENST00000534296 A0A1B0GUT8 65 aa-0.44□□□□□ -2.48
CD44-238ENST00000534296 COX7BP24311 80 aa-0.44□□□□□ -2.48
CD44-238ENST00000534296 IQCF6A8MYZ5 107 aa-0.45□□□□□ -2.48
CD44-238ENST00000534296 GAFA1Q96PS6 74 aa-0.45□□□□□ -2.48
CD44-238ENST00000534296 HMGN2P05204 90 aaKnown RBP-0.46□□□□□ -2.48
CD44-238ENST00000534296 TTTY10Q9BZA0 68 aa-0.47□□□□□ -2.48
CD44-238ENST00000534296 Q9H521 79 aa-0.47□□□□□ -2.48
CD44-238ENST00000534296 NDUFB1O75438 58 aa-0.52□□□□□ -2.49
CD44-238ENST00000534296 NDUFA3O95167 84 aa-0.52□□□□□ -2.49
CD44-238ENST00000534296 C3orf79P0CE67 100 aa-0.52□□□□□ -2.49
CD44-238ENST00000534296 KRTAP19-5Q3LI72 72 aa-0.52□□□□□ -2.49
CD44-238ENST00000534296 DEFB108AA8MXU0 73 aa-0.53□□□□□ -2.49
CD44-238ENST00000534296 H3BNG1 76 aa-0.53□□□□□ -2.49
CD44-238ENST00000534296 K7EP34 96 aa-0.53□□□□□ -2.49
CD44-238ENST00000534296 DEFB4AO15263 64 aa-0.53□□□□□ -2.49
CD44-238ENST00000534296 PYY3Q5JQD4 70 aa-0.53□□□□□ -2.49
CD44-238ENST00000534296 MYMXA0A1B0GTQ4 84 aa-0.54□□□□□ -2.5
CD44-238ENST00000534296 SNRPFP62306 86 aaKnown RBP-0.55□□□□□ -2.5
CD44-238ENST00000534296 TRAV21A0A0B4J279 112 aa-0.56□□□□□ -2.5
CD44-238ENST00000534296 CEBPZOSA8MTT3 80 aa-0.56□□□□□ -2.5
CD44-238ENST00000534296 H3BSH0 61 aa-0.56□□□□□ -2.5
CD44-238ENST00000534296 RABAC1Q9UI14 185 aa-0.56□□□□□ -2.5
CD44-238ENST00000534296 V9GYS6 101 aa-0.56□□□□□ -2.5
CD44-238ENST00000534296 C9orf92A6NGG3 77 aa-0.57□□□□□ -2.5
CD44-238ENST00000534296 TDRG1Q3Y452 100 aa-0.57□□□□□ -2.5
CD44-238ENST00000534296 S100A16Q96FQ6 103 aaKnown RBP-0.57□□□□□ -2.5
CD44-238ENST00000534296 PVALEFA0A1B0GWK0 134 aa-0.58□□□□□ -2.5
CD44-238ENST00000534296 IFI27P40305 119 aaPredicted RBP-0.58□□□□□ -2.5
CD44-238ENST00000534296 LINC00158P58513 81 aa-0.58□□□□□ -2.5
CD44-238ENST00000534296 LINC00643Q86TS7 51 aa-0.58□□□□□ -2.5
CD44-238ENST00000534296 ANKARQ7Z5J8 1434 aa-0.58□□□□□ -2.5
CD44-238ENST00000534296 DEFB131BA0A096LNP1 70 aa-0.59□□□□□ -2.5
CD44-238ENST00000534296 ACYP1P07311 99 aa-0.59□□□□□ -2.5
CD44-238ENST00000534296 GCC2Q8IWJ2 1684 aa-0.6□□□□□ -2.51
CD44-238ENST00000534296 KANTRA0A1W2PQU2 76 aa-0.61□□□□□ -2.51
CD44-238ENST00000534296 DEFB1P60022 68 aa-0.62□□□□□ -2.51
CD44-238ENST00000534296 UMAD1C9J7I0 102 aa-0.64□□□□□ -2.51
CD44-238ENST00000534296 IFI6P09912 130 aa-0.64□□□□□ -2.51
CD44-238ENST00000534296 DEFB108BQ8NET1 73 aa-0.64□□□□□ -2.51
CD44-238ENST00000534296 DEFB133Q30KQ1 61 aa-0.65□□□□□ -2.51
CD44-238ENST00000534296 Q9Y3F1 56 aa-0.65□□□□□ -2.51
CD44-238ENST00000534296 GNG2P59768 71 aa-0.67□□□□□ -2.52
CD44-238ENST00000534296 A0A087WXM4 84 aa-0.68□□□□□ -2.52
CD44-238ENST00000534296 HMGA1P17096 107 aaKnown RBP-0.68□□□□□ -2.52
CD44-238ENST00000534296 DEFB136Q30KP8 78 aa-0.68□□□□□ -2.52
CD44-238ENST00000534296 ATP5EP2Q5VTU8 51 aa-0.68□□□□□ -2.52
CD44-238ENST00000534296 CD52P31358 61 aa-0.69□□□□□ -2.52
CD44-238ENST00000534296 PRLHP81277 87 aa-0.69□□□□□ -2.52
CD44-238ENST00000534296 MRPL33O75394 65 aaKnown RBP-0.7□□□□□ -2.52
CD44-238ENST00000534296 HTN3P15516 51 aa-0.7□□□□□ -2.52
CD44-238ENST00000534296 NDUFA4O00483 81 aa-0.71□□□□□ -2.52
CD44-238ENST00000534296 H3BUX3 64 aa-0.72□□□□□ -2.52
CD44-238ENST00000534296 IAPPP10997 89 aa-0.72□□□□□ -2.52
CD44-238ENST00000534296 ADIRFQ15847 76 aa-0.72□□□□□ -2.52
CD44-238ENST00000534296 RPS27LQ71UM5 84 aaKnown RBP-0.72□□□□□ -2.52
CD44-238ENST00000534296 ST20Q9HBF5 79 aa-0.72□□□□□ -2.52
CD44-238ENST00000534296 S4R3F8 94 aa-0.72□□□□□ -2.52
CD44-238ENST00000534296 NREPQ16612 68 aa-0.73□□□□□ -2.53
CD44-238ENST00000534296 DEFB110Q30KQ9 67 aa-0.74□□□□□ -2.53
CD44-238ENST00000534296 S100A13Q99584 98 aa-0.74□□□□□ -2.53
CD44-238ENST00000534296 DEFB130BP0DP73 79 aa-0.75□□□□□ -2.53
CD44-238ENST00000534296 DEFB130AP0DP74 79 aa-0.75□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms