RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CACNA1HO95180 2353 aa0.94□□□□□ -2.26
CD44-216ENST00000525293 COL12A1Q99715 3063 aa0.94□□□□□ -2.26
CD44-216ENST00000525293 COL6A6A6NMZ7 2263 aa0.93□□□□□ -2.26
CD44-216ENST00000525293 KRTAP5-10Q6L8G5 202 aa0.93□□□□□ -2.26
CD44-216ENST00000525293 PRO0255Q9UI72 69 aa0.93□□□□□ -2.26
CD44-216ENST00000525293 DOPEY2Q9Y3R5 2298 aa0.92□□□□□ -2.26
CD44-216ENST00000525293 LAMA1P25391 3075 aa0.92□□□□□ -2.26
CD44-216ENST00000525293 OTOGQ6ZRI0 2925 aa0.92□□□□□ -2.26
CD44-216ENST00000525293 A0A0D9SG42 100 aa0.92□□□□□ -2.26
CD44-216ENST00000525293 SPRR1BP22528 89 aa0.92□□□□□ -2.26
CD44-216ENST00000525293 LRBAP50851 2863 aa0.92□□□□□ -2.26
CD44-216ENST00000525293 LOC400499M0QZD8 3231 aa0.92□□□□□ -2.26
CD44-216ENST00000525293 TGP01266 2768 aa0.91□□□□□ -2.26
CD44-216ENST00000525293 HMCN2Q8NDA2 5059 aa0.91□□□□□ -2.26
CD44-216ENST00000525293 DMXL1Q9Y485 3027 aa0.91□□□□□ -2.26
CD44-216ENST00000525293 ACANP16112 2415 aa0.91□□□□□ -2.26
CD44-216ENST00000525293 SPTBN1Q01082 2364 aaKnown RBP0.91□□□□□ -2.26
CD44-216ENST00000525293 NBPF19A0A087WUL8 3843 aa0.91□□□□□ -2.26
CD44-216ENST00000525293 FRYLO94915 3013 aa0.91□□□□□ -2.26
CD44-216ENST00000525293 MUC5ACP98088 5654 aa0.91□□□□□ -2.26
CD44-216ENST00000525293 ICE1Q9Y2F5 2266 aa0.9□□□□□ -2.26
CD44-216ENST00000525293 WNK1Q9H4A3 2382 aa0.9□□□□□ -2.27
CD44-216ENST00000525293 CHD9Q3L8U1 2897 aa0.9□□□□□ -2.27
CD44-216ENST00000525293 DEFB109BQ30KR1 87 aa0.9□□□□□ -2.27
CD44-216ENST00000525293 SPENQ96T58 3664 aaKnown RBP0.9□□□□□ -2.27
CD44-216ENST00000525293 NIPBLQ6KC79 2804 aaeCLIP0.9□□□□□ -2.27
CD44-216ENST00000525293 FREM2Q5SZK8 3169 aa0.9□□□□□ -2.27
CD44-216ENST00000525293 PKDREJQ9NTG1 2253 aa0.89□□□□□ -2.27
CD44-216ENST00000525293 H0YGG7 62 aa0.89□□□□□ -2.27
CD44-216ENST00000525293 H3BUA1 57 aa0.89□□□□□ -2.27
CD44-216ENST00000525293 LAMA5O15230 3695 aa0.89□□□□□ -2.27
CD44-216ENST00000525293 NBASA2RRP1 2371 aa0.89□□□□□ -2.27
CD44-216ENST00000525293 WNK2Q9Y3S1 2297 aa0.89□□□□□ -2.27
CD44-216ENST00000525293 APC2O95996 2303 aa0.88□□□□□ -2.27
CD44-216ENST00000525293 DSPP15924 2871 aaKnown RBP0.88□□□□□ -2.27
CD44-216ENST00000525293 MDN1Q9NU22 5596 aa0.88□□□□□ -2.27
CD44-216ENST00000525293 PLCE1Q9P212 2302 aa0.87□□□□□ -2.27
CD44-216ENST00000525293 COL7A1Q02388 2944 aa0.87□□□□□ -2.27
CD44-216ENST00000525293 Q5VSD8 79 aa0.87□□□□□ -2.27
CD44-216ENST00000525293 Q9Y3F1 56 aa0.87□□□□□ -2.27
CD44-216ENST00000525293 VPS13CQ709C8 3753 aa0.87□□□□□ -2.27
CD44-216ENST00000525293 AKAP6Q13023 2319 aa0.87□□□□□ -2.27
CD44-216ENST00000525293 KRTAP2-3P0C7H8 128 aa0.86□□□□□ -2.27
CD44-216ENST00000525293 KRTAP2-4Q9BYR9 128 aa0.86□□□□□ -2.27
CD44-216ENST00000525293 USF3Q68DE3 2245 aa0.86□□□□□ -2.27
CD44-216ENST00000525293 ITPR2Q14571 2701 aa0.86□□□□□ -2.27
CD44-216ENST00000525293 ATMQ13315 3056 aa0.85□□□□□ -2.27
CD44-216ENST00000525293 ZNF469Q96JG9 3925 aaPredicted RBP0.85□□□□□ -2.27
CD44-216ENST00000525293 HTN1P15515 57 aa0.85□□□□□ -2.27
CD44-216ENST00000525293 COX14Q96I36 57 aa0.85□□□□□ -2.27
CD44-216ENST00000525293 DMXL2Q8TDJ6 3036 aa0.85□□□□□ -2.27
CD44-216ENST00000525293 CSMD2Q7Z408 3487 aa0.84□□□□□ -2.27
CD44-216ENST00000525293 MGAQ8IWI9 3026 aa0.84□□□□□ -2.27
CD44-216ENST00000525293 CD52P31358 61 aa0.84□□□□□ -2.27
CD44-216ENST00000525293 DEFB136Q30KP8 78 aa0.84□□□□□ -2.27
CD44-216ENST00000525293 APCP25054 2843 aa0.84□□□□□ -2.28
CD44-216ENST00000525293 HIVEP1P15822 2718 aa0.84□□□□□ -2.28
CD44-216ENST00000525293 F8P00451 2351 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 DEFB110Q30KQ9 67 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 DEFB119Q8N690 84 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 DEFB108BQ8NET1 73 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 RHPN1-AS1Q9BWJ2 59 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 ROS1P08922 2347 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 FAT3Q8TDW7 4589 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 SACSQ9NZJ4 4579 aa0.83□□□□□ -2.28
CD44-216ENST00000525293 MAP1AP78559 2803 aaPredicted RBP0.83□□□□□ -2.28
CD44-216ENST00000525293 SVEP1Q4LDE5 3571 aa0.82□□□□□ -2.28
CD44-216ENST00000525293 J3QKU1 62 aa0.82□□□□□ -2.28
CD44-216ENST00000525293 NOP10Q9NPE3 64 aaKnown RBP0.82□□□□□ -2.28
CD44-216ENST00000525293 CENPEQ02224 2701 aa0.82□□□□□ -2.28
CD44-216ENST00000525293 CSPG4Q6UVK1 2322 aa0.82□□□□□ -2.28
CD44-216ENST00000525293 DCHS2Q6V1P9 2916 aa0.81□□□□□ -2.28
CD44-216ENST00000525293 A0A096LNI7 61 aa0.81□□□□□ -2.28
CD44-216ENST00000525293 AKAP9Q99996 3911 aa0.81□□□□□ -2.28
CD44-216ENST00000525293 ADGRG4Q8IZF6 3080 aa0.81□□□□□ -2.28
CD44-216ENST00000525293 USH2AO75445 5202 aa0.8□□□□□ -2.28
CD44-216ENST00000525293 DYNC2H1Q8NCM8 4307 aaKnown RBP0.8□□□□□ -2.28
CD44-216ENST00000525293 CUBNO60494 3623 aa0.8□□□□□ -2.28
CD44-216ENST00000525293 KRTAP2-1Q9BYU5 128 aa0.79□□□□□ -2.28
CD44-216ENST00000525293 ANK2Q01484 3957 aa0.79□□□□□ -2.28
CD44-216ENST00000525293 DNAH1Q9P2D7 4330 aa0.78□□□□□ -2.28
CD44-216ENST00000525293 SPINK6Q6UWN8 80 aa0.78□□□□□ -2.28
CD44-216ENST00000525293 DEFB124Q8NES8 71 aa0.78□□□□□ -2.28
CD44-216ENST00000525293 PRKDCP78527 4128 aaKnown RBP0.78□□□□□ -2.28
CD44-216ENST00000525293 MUC12Q9UKN1 5478 aa0.77□□□□□ -2.29
CD44-216ENST00000525293 CMYA5Q8N3K9 4069 aa0.76□□□□□ -2.29
CD44-216ENST00000525293 KMT2AQ03164 3969 aa0.76□□□□□ -2.29
CD44-216ENST00000525293 A0A096LPF7 62 aa0.76□□□□□ -2.29
CD44-216ENST00000525293 KRTAP10-4P60372 401 aaPredicted RBP0.76□□□□□ -2.29
CD44-216ENST00000525293 HRNRQ86YZ3 2850 aaPredicted RBP0.76□□□□□ -2.29
CD44-216ENST00000525293 M0QZ58 72 aa0.75□□□□□ -2.29
CD44-216ENST00000525293 DEFB133Q30KQ1 61 aa0.75□□□□□ -2.29
CD44-216ENST00000525293 U3KQA8 63 aa0.75□□□□□ -2.29
CD44-216ENST00000525293 MYCBP2O75592 4640 aa0.74□□□□□ -2.29
CD44-216ENST00000525293 H3BUX3 64 aa0.74□□□□□ -2.29
CD44-216ENST00000525293 TRRAPQ9Y4A5 3859 aa0.74□□□□□ -2.29
CD44-216ENST00000525293 VPS13DQ5THJ4 4388 aa0.73□□□□□ -2.29
CD44-216ENST00000525293 CSMD3Q7Z407 3707 aa0.73□□□□□ -2.29
CD44-216ENST00000525293 TACC2O95359 2948 aa0.73□□□□□ -2.29
CD44-216ENST00000525293 PLECQ15149 4684 aaKnown RBP0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms