RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 COL5A1-AS1Q5SY13 56 aa-0.43□□□□□ -2.48
CD44-215ENST00000525241 I3L3M4 83 aa-0.44□□□□□ -2.48
CD44-215ENST00000525241 ALKAL2Q6UX46 152 aa-0.44□□□□□ -2.48
CD44-215ENST00000525241 PRXQ9BXM0 1461 aa-0.44□□□□□ -2.48
CD44-215ENST00000525241 H0YAA0 97 aa-0.45□□□□□ -2.48
CD44-215ENST00000525241 DEFB112Q30KQ8 113 aa-0.45□□□□□ -2.48
CD44-215ENST00000525241 ZNF720Q7Z2F6 126 aa-0.45□□□□□ -2.48
CD44-215ENST00000525241 D6R8Y8 96 aa-0.46□□□□□ -2.48
CD44-215ENST00000525241 LEPROTL1O95214 131 aa-0.46□□□□□ -2.48
CD44-215ENST00000525241 GYPAP02724 150 aa-0.46□□□□□ -2.48
CD44-215ENST00000525241 HMGN2P05204 90 aaKnown RBP-0.46□□□□□ -2.48
CD44-215ENST00000525241 COX6B2Q6YFQ2 88 aa-0.46□□□□□ -2.48
CD44-215ENST00000525241 MUSTN1Q8IVN3 82 aa-0.46□□□□□ -2.48
CD44-215ENST00000525241 CD163L1Q9NR16 1453 aa-0.47□□□□□ -2.48
CD44-215ENST00000525241 SPTY2D1-AS1A0A0U1RR47 76 aa-0.47□□□□□ -2.48
CD44-215ENST00000525241 MT1AP04731 61 aa-0.47□□□□□ -2.48
CD44-215ENST00000525241 NMSQ5H8A3 153 aa-0.47□□□□□ -2.48
CD44-215ENST00000525241 ARFGEF2Q9Y6D5 1785 aa-0.47□□□□□ -2.49
CD44-215ENST00000525241 CCL22O00626 93 aa-0.48□□□□□ -2.49
CD44-215ENST00000525241 C9orf62Q8N4C0 152 aa-0.48□□□□□ -2.49
CD44-215ENST00000525241 COX7BP24311 80 aa-0.49□□□□□ -2.49
CD44-215ENST00000525241 DEFB135Q30KP9 77 aa-0.49□□□□□ -2.49
CD44-215ENST00000525241 IQGAP3Q86VI3 1631 aa-0.49□□□□□ -2.49
CD44-215ENST00000525241 MT1XP80297 61 aa-0.51□□□□□ -2.49
CD44-215ENST00000525241 TFF3Q07654 80 aa-0.51□□□□□ -2.49
CD44-215ENST00000525241 IQCF6A8MYZ5 107 aa-0.52□□□□□ -2.49
CD44-215ENST00000525241 WFDC13Q8IUB5 93 aa-0.52□□□□□ -2.49
CD44-215ENST00000525241 MT1LQ93083 61 aa-0.52□□□□□ -2.49
CD44-215ENST00000525241 CDKN2A-AS1Q9UH64 79 aa-0.52□□□□□ -2.49
CD44-215ENST00000525241 K7EP34 96 aa-0.53□□□□□ -2.49
CD44-215ENST00000525241 STATHP02808 62 aa-0.53□□□□□ -2.49
CD44-215ENST00000525241 PYY3Q5JQD4 70 aa-0.53□□□□□ -2.49
CD44-215ENST00000525241 WFDC9Q8NEX5 89 aa-0.53□□□□□ -2.49
CD44-215ENST00000525241 PLIN4Q96Q06 1357 aa-0.54□□□□□ -2.5
CD44-215ENST00000525241 PEA15Q15121 130 aa-0.54□□□□□ -2.5
CD44-215ENST00000525241 PLGLAQ15195 96 aa-0.54□□□□□ -2.5
CD44-215ENST00000525241 A0A1B0GUT8 65 aa-0.55□□□□□ -2.5
CD44-215ENST00000525241 MYMXA0A1B0GTQ4 84 aa-0.56□□□□□ -2.5
CD44-215ENST00000525241 HEPN1Q6WQI6 88 aa-0.56□□□□□ -2.5
CD44-215ENST00000525241 RABAC1Q9UI14 185 aa-0.56□□□□□ -2.5
CD44-215ENST00000525241 V9GYS6 101 aa-0.56□□□□□ -2.5
CD44-215ENST00000525241 TRAV21A0A0B4J279 112 aa-0.57□□□□□ -2.5
CD44-215ENST00000525241 NDUFA3O95167 84 aa-0.57□□□□□ -2.5
CD44-215ENST00000525241 SMIM11AP58511 58 aa-0.57□□□□□ -2.5
CD44-215ENST00000525241 TDRG1Q3Y452 100 aa-0.57□□□□□ -2.5
CD44-215ENST00000525241 PVALEFA0A1B0GWK0 134 aa-0.58□□□□□ -2.5
CD44-215ENST00000525241 SNRPFP62306 86 aaKnown RBP-0.58□□□□□ -2.5
CD44-215ENST00000525241 LINC00643Q86TS7 51 aa-0.58□□□□□ -2.5
CD44-215ENST00000525241 GAFA1Q96PS6 74 aa-0.58□□□□□ -2.5
CD44-215ENST00000525241 S100A16Q96FQ6 103 aaKnown RBP-0.59□□□□□ -2.5
CD44-215ENST00000525241 RPS29P62273 56 aaKnown RBP-0.61□□□□□ -2.51
CD44-215ENST00000525241 CEBPZOSA8MTT3 80 aa-0.62□□□□□ -2.51
CD44-215ENST00000525241 CYB5AP00167 134 aa-0.62□□□□□ -2.51
CD44-215ENST00000525241 Q9H521 79 aa-0.62□□□□□ -2.51
CD44-215ENST00000525241 RPL38P63173 70 aaKnown RBP-0.63□□□□□ -2.51
CD44-215ENST00000525241 DEFA5Q01523 94 aa-0.63□□□□□ -2.51
CD44-215ENST00000525241 KRTAP19-5Q3LI72 72 aa-0.63□□□□□ -2.51
CD44-215ENST00000525241 ACYP1P07311 99 aa-0.64□□□□□ -2.51
CD44-215ENST00000525241 NDUFB1O75438 58 aa-0.66□□□□□ -2.52
CD44-215ENST00000525241 IFI6P09912 130 aa-0.67□□□□□ -2.52
CD44-215ENST00000525241 GNG2P59768 71 aa-0.67□□□□□ -2.52
CD44-215ENST00000525241 DEFB108AA8MXU0 73 aa-0.69□□□□□ -2.52
CD44-215ENST00000525241 C3orf79P0CE67 100 aa-0.69□□□□□ -2.52
CD44-215ENST00000525241 HMGA1P17096 107 aaKnown RBP-0.69□□□□□ -2.52
CD44-215ENST00000525241 H0YGG7 62 aa-0.7□□□□□ -2.52
CD44-215ENST00000525241 LINC00158P58513 81 aa-0.7□□□□□ -2.52
CD44-215ENST00000525241 UMAD1C9J7I0 102 aa-0.71□□□□□ -2.52
CD44-215ENST00000525241 DEFB4AO15263 64 aa-0.71□□□□□ -2.52
CD44-215ENST00000525241 KANTRA0A1W2PQU2 76 aa-0.72□□□□□ -2.52
CD44-215ENST00000525241 ATP5EP2Q5VTU8 51 aa-0.72□□□□□ -2.52
CD44-215ENST00000525241 TTTY10Q9BZA0 68 aa-0.72□□□□□ -2.52
CD44-215ENST00000525241 ST20Q9HBF5 79 aa-0.72□□□□□ -2.52
CD44-215ENST00000525241 NDUFA4O00483 81 aa-0.73□□□□□ -2.53
CD44-215ENST00000525241 NREPQ16612 68 aa-0.73□□□□□ -2.53
CD44-215ENST00000525241 C9orf92A6NGG3 77 aa-0.75□□□□□ -2.53
CD44-215ENST00000525241 IFI27P40305 119 aaPredicted RBP-0.75□□□□□ -2.53
CD44-215ENST00000525241 H3BNG1 76 aa-0.76□□□□□ -2.53
CD44-215ENST00000525241 DEFB130BP0DP73 79 aa-0.76□□□□□ -2.53
CD44-215ENST00000525241 DEFB130AP0DP74 79 aa-0.76□□□□□ -2.53
CD44-215ENST00000525241 PRLHP81277 87 aa-0.76□□□□□ -2.53
CD44-215ENST00000525241 BVES-AS1Q5T3Y7 98 aa-0.76□□□□□ -2.53
CD44-215ENST00000525241 H3BUT2 72 aa-0.77□□□□□ -2.53
CD44-215ENST00000525241 DEFB131BA0A096LNP1 70 aa-0.78□□□□□ -2.53
CD44-215ENST00000525241 SMIM13P0DJ93 91 aa-0.78□□□□□ -2.53
CD44-215ENST00000525241 ADIRFQ15847 76 aa-0.78□□□□□ -2.53
CD44-215ENST00000525241 KCNQ1DNQ9H478 68 aa-0.78□□□□□ -2.53
CD44-215ENST00000525241 GCC2Q8IWJ2 1684 aa-0.78□□□□□ -2.53
CD44-215ENST00000525241 ANKARQ7Z5J8 1434 aa-0.79□□□□□ -2.54
CD44-215ENST00000525241 H3BSH0 61 aa-0.79□□□□□ -2.54
CD44-215ENST00000525241 IAPPP10997 89 aa-0.79□□□□□ -2.54
CD44-215ENST00000525241 S100A13Q99584 98 aa-0.8□□□□□ -2.54
CD44-215ENST00000525241 DEFB108BQ8NET1 73 aa-0.82□□□□□ -2.54
CD44-215ENST00000525241 C18orf32Q8TCD1 76 aa-0.82□□□□□ -2.54
CD44-215ENST00000525241 S4R3F8 94 aa-0.83□□□□□ -2.54
CD44-215ENST00000525241 A0A087WXM4 84 aa-0.84□□□□□ -2.54
CD44-215ENST00000525241 DEFB1P60022 68 aa-0.84□□□□□ -2.54
CD44-215ENST00000525241 CRIP1P50238 77 aa-0.85□□□□□ -2.55
CD44-215ENST00000525241 DEFB106AQ8N104 65 aa-0.86□□□□□ -2.55
CD44-215ENST00000525241 DEFB133Q30KQ1 61 aa-0.87□□□□□ -2.55
CD44-215ENST00000525241 DEFB136Q30KP8 78 aa-0.88□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms