RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 LCE3AQ5TA76 89 aa6.85□□□□□ -1.31
PCDHA3-201ENST00000522353 LORP23490 312 aaPredicted RBP6.8□□□□□ -1.32
PCDHA3-201ENST00000522353 DNAH5Q8TE73 4624 aa6.77□□□□□ -1.33
PCDHA3-201ENST00000522353 DNAH9Q9NYC9 4486 aa6.74□□□□□ -1.33
PCDHA3-201ENST00000522353 PLECQ15149 4684 aaKnown RBP6.73□□□□□ -1.33
PCDHA3-201ENST00000522353 MT1HP80294 61 aa6.69□□□□□ -1.34
PCDHA3-201ENST00000522353 AKAP9Q99996 3911 aa6.68□□□□□ -1.34
PCDHA3-201ENST00000522353 ZNF469Q96JG9 3925 aaPredicted RBP6.67□□□□□ -1.34
PCDHA3-201ENST00000522353 KRTAP4-1Q9BYQ7 146 aa6.65□□□□□ -1.34
PCDHA3-201ENST00000522353 DNAH11Q96DT5 4516 aa6.63□□□□□ -1.35
PCDHA3-201ENST00000522353 DNHD1Q96M86 4753 aa6.59□□□□□ -1.35
PCDHA3-201ENST00000522353 MT2AP02795 61 aa6.59□□□□□ -1.35
PCDHA3-201ENST00000522353 DNAH1Q9P2D7 4330 aa6.59□□□□□ -1.36
PCDHA3-201ENST00000522353 DNAH10Q8IVF4 4471 aa6.55□□□□□ -1.36
PCDHA3-201ENST00000522353 DNAH17Q9UFH2 4485 aa6.54□□□□□ -1.36
PCDHA3-201ENST00000522353 CSMD3Q7Z407 3707 aa6.53□□□□□ -1.36
PCDHA3-201ENST00000522353 SPRR2GQ9BYE4 73 aa6.51□□□□□ -1.37
PCDHA3-201ENST00000522353 KRTAP10-5P60370 271 aa6.49□□□□□ -1.37
PCDHA3-201ENST00000522353 VPS13DQ5THJ4 4388 aa6.47□□□□□ -1.37
PCDHA3-201ENST00000522353 FAT1Q14517 4588 aa6.45□□□□□ -1.38
PCDHA3-201ENST00000522353 DNAH2Q9P225 4427 aa6.43□□□□□ -1.38
PCDHA3-201ENST00000522353 MT1FP04733 61 aa6.41□□□□□ -1.38
PCDHA3-201ENST00000522353 RYR1P21817 5038 aa6.4□□□□□ -1.38
PCDHA3-201ENST00000522353 DYNC1H1Q14204 4646 aaKnown RBP6.38□□□□□ -1.39
PCDHA3-201ENST00000522353 SPRR2FQ96RM1 72 aa6.38□□□□□ -1.39
PCDHA3-201ENST00000522353 DNAH8Q96JB1 4490 aa6.34□□□□□ -1.39
PCDHA3-201ENST00000522353 KRTAP10-7P60409 375 aaPredicted RBP6.33□□□□□ -1.4
PCDHA3-201ENST00000522353 DNAH3Q8TD57 4116 aa6.31□□□□□ -1.4
PCDHA3-201ENST00000522353 LRP1BQ9NZR2 4599 aa6.28□□□□□ -1.4
PCDHA3-201ENST00000522353 STARD9Q9P2P6 4700 aa6.26□□□□□ -1.41
PCDHA3-201ENST00000522353 SACSQ9NZJ4 4579 aa6.24□□□□□ -1.41
PCDHA3-201ENST00000522353 KRTAP19-4Q3LI73 84 aa6.22□□□□□ -1.41
PCDHA3-201ENST00000522353 KRTAP19-5Q3LI72 72 aa6.2□□□□□ -1.42
PCDHA3-201ENST00000522353 DYNC2H1Q8NCM8 4307 aaKnown RBP6.19□□□□□ -1.42
PCDHA3-201ENST00000522353 FAT2Q9NYQ8 4349 aa6.14□□□□□ -1.43
PCDHA3-201ENST00000522353 PRKDCP78527 4128 aaKnown RBP6.12□□□□□ -1.43
PCDHA3-201ENST00000522353 LCE3CQ5T5A8 94 aa6.08□□□□□ -1.44
PCDHA3-201ENST00000522353 KRTAP19-8Q3LI54 63 aa6.07□□□□□ -1.44
PCDHA3-201ENST00000522353 ANK2Q01484 3957 aa6.06□□□□□ -1.44
PCDHA3-201ENST00000522353 RYR3Q15413 4870 aa6.05□□□□□ -1.44
PCDHA3-201ENST00000522353 APOBP04114 4563 aaKnown RBP6.03□□□□□ -1.44
PCDHA3-201ENST00000522353 KIAA1109Q2LD37 5005 aa6.02□□□□□ -1.45
PCDHA3-201ENST00000522353 SPRR2EP22531 72 aa6.01□□□□□ -1.45
PCDHA3-201ENST00000522353 SPRR2BP35325 72 aa6.01□□□□□ -1.45
PCDHA3-201ENST00000522353 SPRR2AP35326 72 aa6.01□□□□□ -1.45
PCDHA3-201ENST00000522353 KRTAP19-1Q8IUB9 90 aa5.99□□□□□ -1.45
PCDHA3-201ENST00000522353 VPS13BQ7Z7G8 4022 aa5.95□□□□□ -1.46
PCDHA3-201ENST00000522353 KMT2AQ03164 3969 aa5.93□□□□□ -1.46
PCDHA3-201ENST00000522353 KRTAP17-1Q9BYP8 105 aa5.91□□□□□ -1.46
PCDHA3-201ENST00000522353 LRP1Q07954 4544 aaKnown RBP5.91□□□□□ -1.46
PCDHA3-201ENST00000522353 DNAH6Q9C0G6 4158 aa5.9□□□□□ -1.47
PCDHA3-201ENST00000522353 FAT3Q8TDW7 4589 aa5.86□□□□□ -1.47
PCDHA3-201ENST00000522353 RYR2Q92736 4967 aa5.86□□□□□ -1.47
PCDHA3-201ENST00000522353 MYCBP2O75592 4640 aa5.83□□□□□ -1.48
PCDHA3-201ENST00000522353 SPRR2DP22532 72 aa5.83□□□□□ -1.48
PCDHA3-201ENST00000522353 LYSTQ99698 3801 aa5.83□□□□□ -1.48
PCDHA3-201ENST00000522353 FRAS1Q86XX4 4008 aa5.82□□□□□ -1.48
PCDHA3-201ENST00000522353 MT1XP80297 61 aa5.82□□□□□ -1.48
PCDHA3-201ENST00000522353 KRTAP9-8Q9BYQ0 159 aa5.82□□□□□ -1.48
PCDHA3-201ENST00000522353 HECTD4Q9Y4D8 3996 aa5.81□□□□□ -1.48
PCDHA3-201ENST00000522353 MT1BP07438 61 aa5.8□□□□□ -1.48
PCDHA3-201ENST00000522353 CMYA5Q8N3K9 4069 aa5.8□□□□□ -1.48
PCDHA3-201ENST00000522353 LCE2BO14633 110 aa5.8□□□□□ -1.48
PCDHA3-201ENST00000522353 SPRR5A0A1B0GTR4 108 aa5.77□□□□□ -1.49
PCDHA3-201ENST00000522353 HERC1Q15751 4861 aa5.77□□□□□ -1.49
PCDHA3-201ENST00000522353 BIRC6Q9NR09 4857 aa5.75□□□□□ -1.49
PCDHA3-201ENST00000522353 HERC2O95714 4834 aa5.75□□□□□ -1.49
PCDHA3-201ENST00000522353 DNAH7Q8WXX0 4024 aa5.74□□□□□ -1.49
PCDHA3-201ENST00000522353 KRTAP12-4P60329 112 aa5.74□□□□□ -1.49
PCDHA3-201ENST00000522353 MT1GP13640 62 aa5.72□□□□□ -1.49
PCDHA3-201ENST00000522353 KRTAP9-3Q9BYQ3 159 aa5.71□□□□□ -1.5
PCDHA3-201ENST00000522353 LCE2CQ5TA81 110 aa5.69□□□□□ -1.5
PCDHA3-201ENST00000522353 PCLOQ9Y6V0 5065 aa5.69□□□□□ -1.5
PCDHA3-201ENST00000522353 LCE3BQ5TA77 95 aa5.64□□□□□ -1.51
PCDHA3-201ENST00000522353 KRTAP4-8A0A0G2JLE6 195 aa5.6□□□□□ -1.51
PCDHA3-201ENST00000522353 KRTAP4-8Q9BYQ9 185 aa5.6□□□□□ -1.51
PCDHA3-201ENST00000522353 PKD1P98161 4303 aa5.59□□□□□ -1.51
PCDHA3-201ENST00000522353 HSPG2P98160 4391 aa5.56□□□□□ -1.52
PCDHA3-201ENST00000522353 EPPK1P58107 5090 aaKnown RBP5.52□□□□□ -1.53
PCDHA3-201ENST00000522353 HYDINQ4G0P3 5121 aa5.5□□□□□ -1.53
PCDHA3-201ENST00000522353 LRP2P98164 4655 aa5.49□□□□□ -1.53
PCDHA3-201ENST00000522353 KRTAP19-3Q7Z4W3 81 aa5.46□□□□□ -1.53
PCDHA3-201ENST00000522353 PKHD1L1Q86WI1 4243 aa5.41□□□□□ -1.54
PCDHA3-201ENST00000522353 PKHD1P08F94 4074 aa5.37□□□□□ -1.55
PCDHA3-201ENST00000522353 LCE3DQ9BYE3 92 aa5.37□□□□□ -1.55
PCDHA3-201ENST00000522353 KRTAP19-2Q3LHN2 52 aa5.35□□□□□ -1.55
PCDHA3-201ENST00000522353 LCE2DQ5TA82 110 aaPredicted RBP5.35□□□□□ -1.55
PCDHA3-201ENST00000522353 KRTAP9-2Q9BYQ4 174 aa5.32□□□□□ -1.56
PCDHA3-201ENST00000522353 MT1LQ93083 61 aa5.32□□□□□ -1.56
PCDHA3-201ENST00000522353 MT1EP04732 61 aa5.3□□□□□ -1.56
PCDHA3-201ENST00000522353 KRTAP19-6Q3LI70 58 aa5.29□□□□□ -1.56
PCDHA3-201ENST00000522353 LCE3EQ5T5B0 92 aa5.28□□□□□ -1.56
PCDHA3-201ENST00000522353 KMT2CQ8NEZ4 4911 aaKnown RBP5.22□□□□□ -1.57
PCDHA3-201ENST00000522353 SYNE1Q8NF91 8797 aaKnown RBP5.22□□□□□ -1.57
PCDHA3-201ENST00000522353 ABCA13Q86UQ4 5058 aa5.2□□□□□ -1.58
PCDHA3-201ENST00000522353 LPAP08519 4548 aa5.19□□□□□ -1.58
PCDHA3-201ENST00000522353 TNXBP22105 4242 aa5.19□□□□□ -1.58
PCDHA3-201ENST00000522353 MUC17Q685J3 4493 aa5.16□□□□□ -1.58
PCDHA3-201ENST00000522353 KRTAP4-7Q9BYR0 210 aa5.16□□□□□ -1.58
PCDHA3-201ENST00000522353 MT1MQ8N339 61 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms