RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 DNAH5Q8TE73 4624 aa7.17□□□□□ -1.26
USP42-207ENST00000521713 DNHD1Q96M86 4753 aa7.14□□□□□ -1.27
USP42-207ENST00000521713 KRTAP10-12P60413 245 aa7.08□□□□□ -1.28
USP42-207ENST00000521713 DNAH11Q96DT5 4516 aa7.07□□□□□ -1.28
USP42-207ENST00000521713 CSMD3Q7Z407 3707 aa7.07□□□□□ -1.28
USP42-207ENST00000521713 PLECQ15149 4684 aaKnown RBP7.06□□□□□ -1.28
USP42-207ENST00000521713 DNAH10Q8IVF4 4471 aa7.02□□□□□ -1.29
USP42-207ENST00000521713 DNAH1Q9P2D7 4330 aa7□□□□□ -1.29
USP42-207ENST00000521713 VPS13DQ5THJ4 4388 aa6.88□□□□□ -1.31
USP42-207ENST00000521713 KRTAP12-3P60328 96 aa6.87□□□□□ -1.31
USP42-207ENST00000521713 DYNC1H1Q14204 4646 aaKnown RBP6.86□□□□□ -1.31
USP42-207ENST00000521713 LORP23490 312 aaPredicted RBP6.84□□□□□ -1.31
USP42-207ENST00000521713 KRTAP4-1Q9BYQ7 146 aa6.83□□□□□ -1.32
USP42-207ENST00000521713 DNAH17Q9UFH2 4485 aa6.8□□□□□ -1.32
USP42-207ENST00000521713 MT1HP80294 61 aa6.78□□□□□ -1.32
USP42-207ENST00000521713 RYR1P21817 5038 aa6.75□□□□□ -1.33
USP42-207ENST00000521713 LRP1BQ9NZR2 4599 aa6.75□□□□□ -1.33
USP42-207ENST00000521713 LCE3AQ5TA76 89 aa6.75□□□□□ -1.33
USP42-207ENST00000521713 DNAH2Q9P225 4427 aa6.72□□□□□ -1.33
USP42-207ENST00000521713 FAT1Q14517 4588 aa6.7□□□□□ -1.34
USP42-207ENST00000521713 CRCT1Q9UGL9 99 aa6.69□□□□□ -1.34
USP42-207ENST00000521713 KRTAP8-1Q8IUC2 63 aa6.67□□□□□ -1.34
USP42-207ENST00000521713 MT2AP02795 61 aa6.66□□□□□ -1.34
USP42-207ENST00000521713 STARD9Q9P2P6 4700 aa6.66□□□□□ -1.34
USP42-207ENST00000521713 SACSQ9NZJ4 4579 aa6.61□□□□□ -1.35
USP42-207ENST00000521713 FAT2Q9NYQ8 4349 aa6.61□□□□□ -1.35
USP42-207ENST00000521713 DYNC2H1Q8NCM8 4307 aaKnown RBP6.59□□□□□ -1.35
USP42-207ENST00000521713 SPRR2GQ9BYE4 73 aa6.58□□□□□ -1.36
USP42-207ENST00000521713 PRKDCP78527 4128 aaKnown RBP6.55□□□□□ -1.36
USP42-207ENST00000521713 KIAA1109Q2LD37 5005 aa6.51□□□□□ -1.37
USP42-207ENST00000521713 ANK2Q01484 3957 aa6.5□□□□□ -1.37
USP42-207ENST00000521713 MT1FP04733 61 aa6.5□□□□□ -1.37
USP42-207ENST00000521713 RYR3Q15413 4870 aa6.45□□□□□ -1.38
USP42-207ENST00000521713 DNAH8Q96JB1 4490 aa6.43□□□□□ -1.38
USP42-207ENST00000521713 DNAH3Q8TD57 4116 aa6.43□□□□□ -1.38
USP42-207ENST00000521713 APOBP04114 4563 aaKnown RBP6.4□□□□□ -1.39
USP42-207ENST00000521713 KRTAP17-1Q9BYP8 105 aa6.37□□□□□ -1.39
USP42-207ENST00000521713 RYR2Q92736 4967 aa6.34□□□□□ -1.39
USP42-207ENST00000521713 KRTAP10-5P60370 271 aa6.33□□□□□ -1.4
USP42-207ENST00000521713 KMT2AQ03164 3969 aa6.32□□□□□ -1.4
USP42-207ENST00000521713 LYSTQ99698 3801 aa6.3□□□□□ -1.4
USP42-207ENST00000521713 CMYA5Q8N3K9 4069 aa6.27□□□□□ -1.41
USP42-207ENST00000521713 VPS13BQ7Z7G8 4022 aa6.25□□□□□ -1.41
USP42-207ENST00000521713 BIRC6Q9NR09 4857 aa6.23□□□□□ -1.41
USP42-207ENST00000521713 SPRR2FQ96RM1 72 aa6.23□□□□□ -1.41
USP42-207ENST00000521713 DNAH6Q9C0G6 4158 aa6.23□□□□□ -1.41
USP42-207ENST00000521713 FAT3Q8TDW7 4589 aa6.22□□□□□ -1.41
USP42-207ENST00000521713 KRTAP19-4Q3LI73 84 aa6.21□□□□□ -1.42
USP42-207ENST00000521713 KRTAP19-8Q3LI54 63 aa6.19□□□□□ -1.42
USP42-207ENST00000521713 HERC2O95714 4834 aa6.19□□□□□ -1.42
USP42-207ENST00000521713 FRAS1Q86XX4 4008 aa6.17□□□□□ -1.42
USP42-207ENST00000521713 MYCBP2O75592 4640 aa6.16□□□□□ -1.42
USP42-207ENST00000521713 DNAH7Q8WXX0 4024 aa6.15□□□□□ -1.43
USP42-207ENST00000521713 KRTAP19-1Q8IUB9 90 aa6.14□□□□□ -1.43
USP42-207ENST00000521713 KRTAP19-5Q3LI72 72 aa6.13□□□□□ -1.43
USP42-207ENST00000521713 KRTAP10-7P60409 375 aaPredicted RBP6.12□□□□□ -1.43
USP42-207ENST00000521713 LRP1Q07954 4544 aaKnown RBP6.08□□□□□ -1.44
USP42-207ENST00000521713 HECTD4Q9Y4D8 3996 aa6.05□□□□□ -1.44
USP42-207ENST00000521713 LCE3CQ5T5A8 94 aa6.05□□□□□ -1.44
USP42-207ENST00000521713 HERC1Q15751 4861 aa6.04□□□□□ -1.44
USP42-207ENST00000521713 KRTAP9-8Q9BYQ0 159 aa6.01□□□□□ -1.45
USP42-207ENST00000521713 PCLOQ9Y6V0 5065 aa5.97□□□□□ -1.45
USP42-207ENST00000521713 LCE2CQ5TA81 110 aa5.97□□□□□ -1.45
USP42-207ENST00000521713 SPRR5A0A1B0GTR4 108 aa5.94□□□□□ -1.46
USP42-207ENST00000521713 MT1BP07438 61 aa5.93□□□□□ -1.46
USP42-207ENST00000521713 HSPG2P98160 4391 aa5.93□□□□□ -1.46
USP42-207ENST00000521713 HYDINQ4G0P3 5121 aa5.92□□□□□ -1.46
USP42-207ENST00000521713 PKD1P98161 4303 aa5.92□□□□□ -1.46
USP42-207ENST00000521713 MT1XP80297 61 aa5.91□□□□□ -1.46
USP42-207ENST00000521713 KRTAP9-3Q9BYQ3 159 aa5.89□□□□□ -1.47
USP42-207ENST00000521713 SPRR2EP22531 72 aa5.87□□□□□ -1.47
USP42-207ENST00000521713 SPRR2BP35325 72 aa5.87□□□□□ -1.47
USP42-207ENST00000521713 SPRR2AP35326 72 aa5.87□□□□□ -1.47
USP42-207ENST00000521713 LRP2P98164 4655 aa5.83□□□□□ -1.48
USP42-207ENST00000521713 PKHD1L1Q86WI1 4243 aa5.79□□□□□ -1.48
USP42-207ENST00000521713 PKHD1P08F94 4074 aa5.79□□□□□ -1.48
USP42-207ENST00000521713 KRTAP19-2Q3LHN2 52 aa5.71□□□□□ -1.5
USP42-207ENST00000521713 SPRR2DP22532 72 aa5.69□□□□□ -1.5
USP42-207ENST00000521713 LCE2BO14633 110 aa5.68□□□□□ -1.5
USP42-207ENST00000521713 MT1GP13640 62 aa5.68□□□□□ -1.5
USP42-207ENST00000521713 EPPK1P58107 5090 aaKnown RBP5.65□□□□□ -1.51
USP42-207ENST00000521713 KRTAP4-8A0A0G2JLE6 195 aa5.63□□□□□ -1.51
USP42-207ENST00000521713 KRTAP4-8Q9BYQ9 185 aa5.63□□□□□ -1.51
USP42-207ENST00000521713 KMT2CQ8NEZ4 4911 aaKnown RBP5.62□□□□□ -1.51
USP42-207ENST00000521713 KRTAP12-4P60329 112 aa5.59□□□□□ -1.51
USP42-207ENST00000521713 ABCA13Q86UQ4 5058 aa5.58□□□□□ -1.52
USP42-207ENST00000521713 MUC17Q685J3 4493 aa5.49□□□□□ -1.53
USP42-207ENST00000521713 LPAP08519 4548 aa5.49□□□□□ -1.53
USP42-207ENST00000521713 KRTAP19-3Q7Z4W3 81 aa5.46□□□□□ -1.54
USP42-207ENST00000521713 KRTAP19-6Q3LI70 58 aa5.45□□□□□ -1.54
USP42-207ENST00000521713 LCE3BQ5TA77 95 aa5.45□□□□□ -1.54
USP42-207ENST00000521713 KRTAP9-2Q9BYQ4 174 aa5.44□□□□□ -1.54
USP42-207ENST00000521713 LCE2AQ5TA79 106 aaPredicted RBP5.4□□□□□ -1.54
USP42-207ENST00000521713 TNXBP22105 4242 aa5.4□□□□□ -1.55
USP42-207ENST00000521713 FLGP20930 4061 aaPredicted RBP5.39□□□□□ -1.55
USP42-207ENST00000521713 LCE2DQ5TA82 110 aaPredicted RBP5.39□□□□□ -1.55
USP42-207ENST00000521713 UBR4Q5T4S7 5183 aa5.38□□□□□ -1.55
USP42-207ENST00000521713 MT1EP04732 61 aa5.36□□□□□ -1.55
USP42-207ENST00000521713 MT1LQ93083 61 aa5.35□□□□□ -1.55
USP42-207ENST00000521713 SYNE1Q8NF91 8797 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms