RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 DEFB131BA0A096LNP1 70 aa-0.85□□□□□ -2.55
NUP54-215ENST00000514313 NDUFA4O00483 81 aa-0.85□□□□□ -2.55
NUP54-215ENST00000514313 LRRIQ1Q96JM4 1722 aa-0.85□□□□□ -2.55
NUP54-215ENST00000514313 C6orf48Q9UBA6 75 aa-0.85□□□□□ -2.55
NUP54-215ENST00000514313 ZC3H13Q5T200 1668 aaKnown RBP-0.85□□□□□ -2.55
NUP54-215ENST00000514313 ITSN2Q9NZM3 1697 aa-0.85□□□□□ -2.55
NUP54-215ENST00000514313 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.85□□□□□ -2.55
NUP54-215ENST00000514313 CD163L1Q9NR16 1453 aa-0.86□□□□□ -2.55
NUP54-215ENST00000514313 HFM1A2PYH4 1435 aa-0.86□□□□□ -2.55
NUP54-215ENST00000514313 UMAD1C9J7I0 102 aa-0.86□□□□□ -2.55
NUP54-215ENST00000514313 RPS27P42677 84 aaKnown RBP-0.86□□□□□ -2.55
NUP54-215ENST00000514313 RPS27LQ71UM5 84 aaKnown RBP-0.86□□□□□ -2.55
NUP54-215ENST00000514313 UBL5Q9BZL1 73 aa-0.86□□□□□ -2.55
NUP54-215ENST00000514313 ITSN1Q15811 1721 aa-0.86□□□□□ -2.55
NUP54-215ENST00000514313 HMGA1P17096 107 aaKnown RBP-0.87□□□□□ -2.55
NUP54-215ENST00000514313 TTTY10Q9BZA0 68 aa-0.87□□□□□ -2.55
NUP54-215ENST00000514313 PREX2Q70Z35 1606 aa-0.87□□□□□ -2.55
NUP54-215ENST00000514313 CCDC88BA6NC98 1476 aa-0.87□□□□□ -2.55
NUP54-215ENST00000514313 CEP250Q9BV73 2442 aa-0.88□□□□□ -2.55
NUP54-215ENST00000514313 KRTAP19-2Q3LHN2 52 aa-0.88□□□□□ -2.55
NUP54-215ENST00000514313 ASPMQ8IZT6 3477 aa-0.88□□□□□ -2.55
NUP54-215ENST00000514313 PIK3C2BO00750 1634 aa-0.89□□□□□ -2.55
NUP54-215ENST00000514313 NRAPQ86VF7 1730 aa-0.89□□□□□ -2.55
NUP54-215ENST00000514313 NCBP2-AS2Q69YL0 99 aa-0.89□□□□□ -2.55
NUP54-215ENST00000514313 ST20Q9HBF5 79 aa-0.89□□□□□ -2.55
NUP54-215ENST00000514313 DIP2BQ9P265 1576 aa-0.89□□□□□ -2.55
NUP54-215ENST00000514313 DNAH12Q6ZR08 3092 aa-0.89□□□□□ -2.55
NUP54-215ENST00000514313 CDH23Q9H251 3354 aa-0.89□□□□□ -2.55
NUP54-215ENST00000514313 RRBP1Q9P2E9 1410 aaKnown RBP-0.89□□□□□ -2.55
NUP54-215ENST00000514313 MED14O60244 1454 aa-0.9□□□□□ -2.55
NUP54-215ENST00000514313 RALGAPBQ86X10 1494 aa-0.9□□□□□ -2.55
NUP54-215ENST00000514313 NREPQ16612 68 aa-0.9□□□□□ -2.55
NUP54-215ENST00000514313 KAAG1Q9UBP8 84 aa-0.9□□□□□ -2.55
NUP54-215ENST00000514313 KIF21BO75037 1637 aa-0.9□□□□□ -2.55
NUP54-215ENST00000514313 ARHGAP35Q9NRY4 1499 aa-0.91□□□□□ -2.55
NUP54-215ENST00000514313 BRCA2P51587 3418 aa-0.91□□□□□ -2.55
NUP54-215ENST00000514313 A0A087WXM4 84 aa-0.91□□□□□ -2.56
NUP54-215ENST00000514313 CRIP1P50238 77 aa-0.91□□□□□ -2.56
NUP54-215ENST00000514313 EEA1Q15075 1411 aa-0.91□□□□□ -2.56
NUP54-215ENST00000514313 CROCC2H7BZ55 1655 aa-0.91□□□□□ -2.56
NUP54-215ENST00000514313 INO80Q9ULG1 1556 aaPredicted RBP-0.91□□□□□ -2.56
NUP54-215ENST00000514313 RICTORQ6R327 1708 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 CENPFP49454 3210 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 ARFGEF2Q9Y6D5 1785 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 CLASP1Q7Z460 1538 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 ETDCA0A1B0GVM5 59 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 SMIM27A0A1W2PRY6 76 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 ADIRFQ15847 76 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 KCNQ1DNQ9H478 68 aa-0.92□□□□□ -2.56
NUP54-215ENST00000514313 POLR2KP53803 58 aaKnown RBP-0.93□□□□□ -2.56
NUP54-215ENST00000514313 ATP5EP2Q5VTU8 51 aa-0.93□□□□□ -2.56
NUP54-215ENST00000514313 RB1CC1Q8TDY2 1594 aa-0.93□□□□□ -2.56
NUP54-215ENST00000514313 TJP1Q07157 1748 aa-0.94□□□□□ -2.56
NUP54-215ENST00000514313 MYO5CQ9NQX4 1742 aa-0.94□□□□□ -2.56
NUP54-215ENST00000514313 WFDC10BQ8IUB3 73 aa-0.94□□□□□ -2.56
NUP54-215ENST00000514313 S100A13Q99584 98 aa-0.94□□□□□ -2.56
NUP54-215ENST00000514313 VPS13AQ96RL7 3174 aa-0.94□□□□□ -2.56
NUP54-215ENST00000514313 FAM208AQ9UK61 1670 aaKnown RBP-0.94□□□□□ -2.56
NUP54-215ENST00000514313 ASXL1Q8IXJ9 1541 aa-0.94□□□□□ -2.56
NUP54-215ENST00000514313 MROH1Q8NDA8 1641 aa-0.95□□□□□ -2.56
NUP54-215ENST00000514313 NMES1Q9C002 83 aa-0.95□□□□□ -2.56
NUP54-215ENST00000514313 CFAP43Q8NDM7 1665 aa-0.95□□□□□ -2.56
NUP54-215ENST00000514313 RNF17Q9BXT8 1623 aaKnown RBP-0.96□□□□□ -2.56
NUP54-215ENST00000514313 ENHOQ6UWT2 76 aa-0.96□□□□□ -2.56
NUP54-215ENST00000514313 ABCC6O95255 1503 aa-0.96□□□□□ -2.56
NUP54-215ENST00000514313 MADDQ8WXG6 1647 aa-0.97□□□□□ -2.56
NUP54-215ENST00000514313 KDM5DQ9BY66 1539 aa-0.97□□□□□ -2.56
NUP54-215ENST00000514313 SMIM13P0DJ93 91 aa-0.97□□□□□ -2.56
NUP54-215ENST00000514313 DIP2AQ14689 1571 aa-0.97□□□□□ -2.56
NUP54-215ENST00000514313 C3P01024 1663 aa-0.97□□□□□ -2.57
NUP54-215ENST00000514313 CD52P31358 61 aa-0.98□□□□□ -2.57
NUP54-215ENST00000514313 DEFB131AP59861 70 aa-0.98□□□□□ -2.57
NUP54-215ENST00000514313 DEFB114Q30KQ6 69 aa-0.98□□□□□ -2.57
NUP54-215ENST00000514313 TMEM167BQ9NRX6 74 aa-0.98□□□□□ -2.57
NUP54-215ENST00000514313 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.98□□□□□ -2.57
NUP54-215ENST00000514313 NHSQ6T4R5 1651 aa-0.98□□□□□ -2.57
NUP54-215ENST00000514313 GLI2P10070 1586 aa-0.99□□□□□ -2.57
NUP54-215ENST00000514313 XIRP2A4UGR9 3374 aa-0.99□□□□□ -2.57
NUP54-215ENST00000514313 DEFB121Q5J5C9 76 aa-0.99□□□□□ -2.57
NUP54-215ENST00000514313 UTRNP46939 3433 aa-1□□□□□ -2.57
NUP54-215ENST00000514313 H3BVH4 76 aa-1□□□□□ -2.57
NUP54-215ENST00000514313 DEFB133Q30KQ1 61 aa-1□□□□□ -2.57
NUP54-215ENST00000514313 S100ZQ8WXG8 99 aa-1□□□□□ -2.57
NUP54-215ENST00000514313 LMTK2Q8IWU2 1503 aa-1□□□□□ -2.57
NUP54-215ENST00000514313 TIAM1Q13009 1591 aa-1□□□□□ -2.57
NUP54-215ENST00000514313 CCDC180Q9P1Z9 1646 aa-1□□□□□ -2.57
NUP54-215ENST00000514313 H3BUT2 72 aa-1.01□□□□□ -2.57
NUP54-215ENST00000514313 K7EMI3 77 aa-1.01□□□□□ -2.57
NUP54-215ENST00000514313 LINC00308Q8TCZ7 52 aa-1.01□□□□□ -2.57
NUP54-215ENST00000514313 NRXN3Q9Y4C0 1643 aa-1.01□□□□□ -2.57
NUP54-215ENST00000514313 MROH2AA6NES4 1674 aa-1.02□□□□□ -2.57
NUP54-215ENST00000514313 SERF2P84101 59 aa-1.02□□□□□ -2.57
NUP54-215ENST00000514313 ANKARQ7Z5J8 1434 aa-1.02□□□□□ -2.57
NUP54-215ENST00000514313 LMO7Q8WWI1 1683 aa-1.02□□□□□ -2.57
NUP54-215ENST00000514313 RHPN1-AS1Q9BWJ2 59 aa-1.02□□□□□ -2.57
NUP54-215ENST00000514313 HTN1P15515 57 aa-1.03□□□□□ -2.57
NUP54-215ENST00000514313 ATXN8Q156A1 80 aa-1.03□□□□□ -2.57
NUP54-215ENST00000514313 SMIM2Q9BVW6 85 aa-1.03□□□□□ -2.57
NUP54-215ENST00000514313 SCRIBQ14160 1630 aa-1.04□□□□□ -2.58
NUP54-215ENST00000514313 EFCAB6Q5THR3 1501 aa-1.04□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms