RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KRTAP10-10P60014 251 aa5.12□□□□□ -1.59
LIMCH1-205ENST00000503057 KRTAP3-2Q9BYR7 98 aa5.1□□□□□ -1.59
LIMCH1-205ENST00000503057 STARD9Q9P2P6 4700 aa5.07□□□□□ -1.6
LIMCH1-205ENST00000503057 DYNC2H1Q8NCM8 4307 aaKnown RBP5.06□□□□□ -1.6
LIMCH1-205ENST00000503057 DNAH2Q9P225 4427 aa5.05□□□□□ -1.6
LIMCH1-205ENST00000503057 COL7A1Q02388 2944 aa5.04□□□□□ -1.6
LIMCH1-205ENST00000503057 DNAH5Q8TE73 4624 aa5.04□□□□□ -1.6
LIMCH1-205ENST00000503057 PRO2289Q9P1D8 64 aa5.03□□□□□ -1.6
LIMCH1-205ENST00000503057 DNAH11Q96DT5 4516 aa5.03□□□□□ -1.6
LIMCH1-205ENST00000503057 DNAH8Q96JB1 4490 aa5□□□□□ -1.61
LIMCH1-205ENST00000503057 DNAH6Q9C0G6 4158 aa4.98□□□□□ -1.61
LIMCH1-205ENST00000503057 KRTAP4-5Q9BYR2 181 aa4.95□□□□□ -1.62
LIMCH1-205ENST00000503057 PRKDCP78527 4128 aaKnown RBP4.94□□□□□ -1.62
LIMCH1-205ENST00000503057 KMT2AQ03164 3969 aa4.91□□□□□ -1.62
LIMCH1-205ENST00000503057 LRP1BQ9NZR2 4599 aa4.89□□□□□ -1.63
LIMCH1-205ENST00000503057 DYNC1H1Q14204 4646 aaKnown RBP4.88□□□□□ -1.63
LIMCH1-205ENST00000503057 SACSQ9NZJ4 4579 aa4.88□□□□□ -1.63
LIMCH1-205ENST00000503057 FAT2Q9NYQ8 4349 aa4.87□□□□□ -1.63
LIMCH1-205ENST00000503057 DNAH7Q8WXX0 4024 aa4.86□□□□□ -1.63
LIMCH1-205ENST00000503057 HECTD4Q9Y4D8 3996 aa4.85□□□□□ -1.63
LIMCH1-205ENST00000503057 LYSTQ99698 3801 aa4.83□□□□□ -1.64
LIMCH1-205ENST00000503057 FRAS1Q86XX4 4008 aa4.82□□□□□ -1.64
LIMCH1-205ENST00000503057 KRTAP15-1Q3LI76 137 aa4.81□□□□□ -1.64
LIMCH1-205ENST00000503057 VPS13BQ7Z7G8 4022 aa4.81□□□□□ -1.64
LIMCH1-205ENST00000503057 DNHD1Q96M86 4753 aa4.8□□□□□ -1.64
LIMCH1-205ENST00000503057 FAT1Q14517 4588 aa4.74□□□□□ -1.65
LIMCH1-205ENST00000503057 LORP23490 312 aaPredicted RBP4.73□□□□□ -1.65
LIMCH1-205ENST00000503057 KRTAP23-1A1A580 65 aa4.7□□□□□ -1.66
LIMCH1-205ENST00000503057 KRTAP4-1Q9BYQ7 146 aa4.66□□□□□ -1.66
LIMCH1-205ENST00000503057 APOBP04114 4563 aaKnown RBP4.63□□□□□ -1.67
LIMCH1-205ENST00000503057 KRTAP10-12P60413 245 aa4.59□□□□□ -1.67
LIMCH1-205ENST00000503057 HYDINQ4G0P3 5121 aa4.55□□□□□ -1.68
LIMCH1-205ENST00000503057 FAT3Q8TDW7 4589 aa4.54□□□□□ -1.68
LIMCH1-205ENST00000503057 PKD1P98161 4303 aa4.54□□□□□ -1.68
LIMCH1-205ENST00000503057 LCE3AQ5TA76 89 aa4.52□□□□□ -1.69
LIMCH1-205ENST00000503057 KRTAP17-1Q9BYP8 105 aa4.52□□□□□ -1.69
LIMCH1-205ENST00000503057 RYR1P21817 5038 aa4.5□□□□□ -1.69
LIMCH1-205ENST00000503057 RYR2Q92736 4967 aa4.49□□□□□ -1.69
LIMCH1-205ENST00000503057 KRTAP12-3P60328 96 aa4.49□□□□□ -1.69
LIMCH1-205ENST00000503057 MT1HP80294 61 aa4.47□□□□□ -1.69
LIMCH1-205ENST00000503057 INE1O15225 51 aa4.47□□□□□ -1.69
LIMCH1-205ENST00000503057 SPRR2GQ9BYE4 73 aa4.46□□□□□ -1.7
LIMCH1-205ENST00000503057 PKHD1L1Q86WI1 4243 aa4.46□□□□□ -1.7
LIMCH1-205ENST00000503057 PKHD1P08F94 4074 aa4.44□□□□□ -1.7
LIMCH1-205ENST00000503057 LRP1Q07954 4544 aaKnown RBP4.43□□□□□ -1.7
LIMCH1-205ENST00000503057 HSPG2P98160 4391 aa4.43□□□□□ -1.7
LIMCH1-205ENST00000503057 RYR3Q15413 4870 aa4.42□□□□□ -1.7
LIMCH1-205ENST00000503057 MT2AP02795 61 aa4.4□□□□□ -1.71
LIMCH1-205ENST00000503057 MYCBP2O75592 4640 aa4.37□□□□□ -1.71
LIMCH1-205ENST00000503057 KIAA1109Q2LD37 5005 aa4.35□□□□□ -1.71
LIMCH1-205ENST00000503057 TNXBP22105 4242 aa4.35□□□□□ -1.71
LIMCH1-205ENST00000503057 MT1FP04733 61 aa4.33□□□□□ -1.72
LIMCH1-205ENST00000503057 KRTAP19-1Q8IUB9 90 aa4.21□□□□□ -1.74
LIMCH1-205ENST00000503057 KRTAP19-8Q3LI54 63 aa4.19□□□□□ -1.74
LIMCH1-205ENST00000503057 LRP2P98164 4655 aa4.19□□□□□ -1.74
LIMCH1-205ENST00000503057 KRTAP8-1Q8IUC2 63 aa4.17□□□□□ -1.74
LIMCH1-205ENST00000503057 LPAP08519 4548 aa4.15□□□□□ -1.74
LIMCH1-205ENST00000503057 KMT2CQ8NEZ4 4911 aaKnown RBP4.14□□□□□ -1.75
LIMCH1-205ENST00000503057 LCE2CQ5TA81 110 aa4.13□□□□□ -1.75
LIMCH1-205ENST00000503057 CRCT1Q9UGL9 99 aa4.12□□□□□ -1.75
LIMCH1-205ENST00000503057 HERC2O95714 4834 aa4.12□□□□□ -1.75
LIMCH1-205ENST00000503057 KRTAP19-2Q3LHN2 52 aa4.11□□□□□ -1.75
LIMCH1-205ENST00000503057 HERC1Q15751 4861 aa4.09□□□□□ -1.75
LIMCH1-205ENST00000503057 BIRC6Q9NR09 4857 aa4.09□□□□□ -1.75
LIMCH1-205ENST00000503057 KRTAP19-5Q3LI72 72 aa4.09□□□□□ -1.75
LIMCH1-205ENST00000503057 KRTAP9-8Q9BYQ0 159 aa4.09□□□□□ -1.75
LIMCH1-205ENST00000503057 MUC17Q685J3 4493 aa4.07□□□□□ -1.76
LIMCH1-205ENST00000503057 MT1XP80297 61 aa4.06□□□□□ -1.76
LIMCH1-205ENST00000503057 MT1BP07438 61 aa4.05□□□□□ -1.76
LIMCH1-205ENST00000503057 LCE3CQ5T5A8 94 aa4.05□□□□□ -1.76
LIMCH1-205ENST00000503057 KRTAP10-5P60370 271 aa4.05□□□□□ -1.76
LIMCH1-205ENST00000503057 KRTAP10-7P60409 375 aaPredicted RBP4.04□□□□□ -1.76
LIMCH1-205ENST00000503057 KRTAP19-4Q3LI73 84 aa4.02□□□□□ -1.77
LIMCH1-205ENST00000503057 SPRR5A0A1B0GTR4 108 aa3.99□□□□□ -1.77
LIMCH1-205ENST00000503057 FLGP20930 4061 aaPredicted RBP3.99□□□□□ -1.77
LIMCH1-205ENST00000503057 KRTAP9-3Q9BYQ3 159 aa3.97□□□□□ -1.77
LIMCH1-205ENST00000503057 EPPK1P58107 5090 aaKnown RBP3.94□□□□□ -1.78
LIMCH1-205ENST00000503057 ABCA13Q86UQ4 5058 aa3.88□□□□□ -1.79
LIMCH1-205ENST00000503057 SPRR2FQ96RM1 72 aa3.81□□□□□ -1.8
LIMCH1-205ENST00000503057 PCLOQ9Y6V0 5065 aa3.81□□□□□ -1.8
LIMCH1-205ENST00000503057 KRTAP4-8A0A0G2JLE6 195 aa3.77□□□□□ -1.81
LIMCH1-205ENST00000503057 KRTAP4-8Q9BYQ9 185 aa3.77□□□□□ -1.81
LIMCH1-205ENST00000503057 LCE2BO14633 110 aa3.76□□□□□ -1.81
LIMCH1-205ENST00000503057 MT1GP13640 62 aa3.65□□□□□ -1.82
LIMCH1-205ENST00000503057 FAT4Q6V0I7 4981 aa3.63□□□□□ -1.83
LIMCH1-205ENST00000503057 MT1LQ93083 61 aa3.62□□□□□ -1.83
LIMCH1-205ENST00000503057 HMCN2Q8NDA2 5059 aa3.62□□□□□ -1.83
LIMCH1-205ENST00000503057 RNF213Q63HN8 5207 aa3.61□□□□□ -1.83
LIMCH1-205ENST00000503057 MT1EP04732 61 aa3.61□□□□□ -1.83
LIMCH1-205ENST00000503057 LCE2AQ5TA79 106 aaPredicted RBP3.58□□□□□ -1.84
LIMCH1-205ENST00000503057 KRTAP19-3Q7Z4W3 81 aa3.56□□□□□ -1.84
LIMCH1-205ENST00000503057 SPRR2EP22531 72 aa3.56□□□□□ -1.84
LIMCH1-205ENST00000503057 SPRR2BP35325 72 aa3.56□□□□□ -1.84
LIMCH1-205ENST00000503057 SPRR2AP35326 72 aa3.56□□□□□ -1.84
LIMCH1-205ENST00000503057 KRTAP19-6Q3LI70 58 aa3.56□□□□□ -1.84
LIMCH1-205ENST00000503057 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
LIMCH1-205ENST00000503057 LCE3BQ5TA77 95 aa3.53□□□□□ -1.84
LIMCH1-205ENST00000503057 LCE2DQ5TA82 110 aaPredicted RBP3.48□□□□□ -1.85
LIMCH1-205ENST00000503057 KRTAP12-4P60329 112 aa3.48□□□□□ -1.85
LIMCH1-205ENST00000503057 KRTAP19-7Q3SYF9 63 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms