RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 D6R8Y8 96 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 NDUFA4O00483 81 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 MUSTN1Q8IVN3 82 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 LEAP2Q969E1 77 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 SNHG12Q9BXW3 62 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 KCNQ1DNQ9H478 68 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 TCHHQ07283 1943 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 PLIN4Q96Q06 1357 aa-0.84□□□□□ -2.54
SCN1A-206ENST00000491429 FANCAO15360 1455 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 NAP1L6A6NFF2 107 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 K7EMI3 77 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 HMGN2P05204 90 aaKnown RBP-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 ATP5EP56381 51 aaPredicted RBP-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 PPP3R1P63098 170 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 PMCHL1Q16048 86 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 NREPQ16612 68 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 DEFB136Q30KP8 78 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 ETDBQ3ZM63 59 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 SAMD9LQ8IVG5 1584 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 PMCHL2Q9BQD1 86 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 C2orf88Q9BSF0 95 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 CFAP74Q9C0B2 1584 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 URB2Q14146 1524 aaKnown RBP-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 PPLO60437 1756 aa-0.85□□□□□ -2.55
SCN1A-206ENST00000491429 CCDC88BA6NC98 1476 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 DEFB131BA0A096LNP1 70 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 MYMXA0A1B0GTQ4 84 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 A0A1B0GUT8 65 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 LINC01546A6NGU7 62 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 ATP6V1G2-DDX39BF2Z307 99 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 S100A1P23297 94 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 FAUP35544 74 aaKnown RBP-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 TMEM203Q969S6 136 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 ABCC1P33527 1531 aa-0.86□□□□□ -2.55
SCN1A-206ENST00000491429 CEP162Q5TB80 1403 aa-0.87□□□□□ -2.55
SCN1A-206ENST00000491429 TMEM218A2RU14 115 aa-0.87□□□□□ -2.55
SCN1A-206ENST00000491429 UQCRHP07919 91 aa-0.87□□□□□ -2.55
SCN1A-206ENST00000491429 S100A10P60903 97 aa-0.87□□□□□ -2.55
SCN1A-206ENST00000491429 MRPS10P82664 201 aaKnown RBP-0.87□□□□□ -2.55
SCN1A-206ENST00000491429 ENHOQ6UWT2 76 aa-0.87□□□□□ -2.55
SCN1A-206ENST00000491429 SYCP2Q9BX26 1530 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 UMAD1C9J7I0 102 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 STATHP02808 62 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 SPART-AS1P0CW21 52 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 GNG4P50150 75 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 TFF3Q07654 80 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 HMGN3Q15651 99 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 COL5A1-AS1Q5SY13 56 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 MINOS1Q5TGZ0 78 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 SVBPQ8N300 66 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 KAAG1Q9UBP8 84 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 RABAC1Q9UI14 185 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 AP4S1Q9Y587 144 aa-0.88□□□□□ -2.55
SCN1A-206ENST00000491429 M0QY20 66 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 ATOX1O00244 68 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 SMIM13P0DJ93 91 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 FCER1GP30273 86 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 PLGLAQ15195 96 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 RPL13AP3Q6NVV1 102 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 TCEAL7Q9BRU2 100 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 C6orf48Q9UBA6 75 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 HFM1A2PYH4 1435 aa-0.89□□□□□ -2.55
SCN1A-206ENST00000491429 CEBPZOSA8MTT3 80 aa-0.9□□□□□ -2.55
SCN1A-206ENST00000491429 NDUFC1O43677 76 aa-0.9□□□□□ -2.55
SCN1A-206ENST00000491429 POLR2KP53803 58 aaKnown RBP-0.9□□□□□ -2.55
SCN1A-206ENST00000491429 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.9□□□□□ -2.55
SCN1A-206ENST00000491429 CCNB3Q8WWL7 1395 aa-0.91□□□□□ -2.55
SCN1A-206ENST00000491429 ETDCA0A1B0GVM5 59 aa-0.91□□□□□ -2.56
SCN1A-206ENST00000491429 RBP2P50120 134 aa-0.91□□□□□ -2.56
SCN1A-206ENST00000491429 LINC00643Q86TS7 51 aa-0.91□□□□□ -2.56
SCN1A-206ENST00000491429 VAMP8Q9BV40 100 aa-0.91□□□□□ -2.56
SCN1A-206ENST00000491429 GNG8Q9UK08 70 aa-0.91□□□□□ -2.56
SCN1A-206ENST00000491429 CNTLNQ9NXG0 1405 aa-0.91□□□□□ -2.56
SCN1A-206ENST00000491429 UQCRHLA0A096LP55 91 aa-0.92□□□□□ -2.56
SCN1A-206ENST00000491429 IFI27P40305 119 aaPredicted RBP-0.92□□□□□ -2.56
SCN1A-206ENST00000491429 KRTDAPP60985 99 aa-0.92□□□□□ -2.56
SCN1A-206ENST00000491429 PYY3Q5JQD4 70 aa-0.92□□□□□ -2.56
SCN1A-206ENST00000491429 ZNF720Q7Z2F6 126 aa-0.92□□□□□ -2.56
SCN1A-206ENST00000491429 DPY30Q9C005 99 aa-0.92□□□□□ -2.56
SCN1A-206ENST00000491429 HILPDAQ9Y5L2 63 aa-0.92□□□□□ -2.56
SCN1A-206ENST00000491429 IGIPA6NJ69 53 aa-0.93□□□□□ -2.56
SCN1A-206ENST00000491429 H3BUT2 72 aa-0.93□□□□□ -2.56
SCN1A-206ENST00000491429 BVES-AS1Q5T3Y7 98 aa-0.93□□□□□ -2.56
SCN1A-206ENST00000491429 WFDC10BQ8IUB3 73 aa-0.93□□□□□ -2.56
SCN1A-206ENST00000491429 LINC00308Q8TCZ7 52 aa-0.93□□□□□ -2.56
SCN1A-206ENST00000491429 S100A16Q96FQ6 103 aaKnown RBP-0.93□□□□□ -2.56
SCN1A-206ENST00000491429 ABCC8Q09428 1581 aa-0.93□□□□□ -2.56
SCN1A-206ENST00000491429 ABCA10Q8WWZ4 1543 aa-0.94□□□□□ -2.56
SCN1A-206ENST00000491429 LINC00032P0C843 101 aa-0.94□□□□□ -2.56
SCN1A-206ENST00000491429 SNRPFP62306 86 aaKnown RBP-0.94□□□□□ -2.56
SCN1A-206ENST00000491429 GTF2H5Q6ZYL4 71 aa-0.94□□□□□ -2.56
SCN1A-206ENST00000491429 NOP10Q9NPE3 64 aaKnown RBP-0.94□□□□□ -2.56
SCN1A-206ENST00000491429 IQGAP3Q86VI3 1631 aa-0.94□□□□□ -2.56
SCN1A-206ENST00000491429 IQGAP2Q13576 1575 aa-0.95□□□□□ -2.56
SCN1A-206ENST00000491429 H3BUA1 57 aa-0.95□□□□□ -2.56
SCN1A-206ENST00000491429 M0R143 59 aa-0.95□□□□□ -2.56
SCN1A-206ENST00000491429 CYB5AP00167 134 aa-0.95□□□□□ -2.56
SCN1A-206ENST00000491429 RPL38P63173 70 aaKnown RBP-0.95□□□□□ -2.56
SCN1A-206ENST00000491429 SARNPP82979 210 aaKnown RBP-0.95□□□□□ -2.56
SCN1A-206ENST00000491429 PEA15Q15121 130 aa-0.95□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms