RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CSMD3Q7Z407 3707 aa7.54□□□□□ -1.2
NPHP4-209ENST00000489180 ALMS1Q8TCU4 4167 aa7.45□□□□□ -1.22
NPHP4-209ENST00000489180 KRTAP23-1A1A580 65 aa7.41□□□□□ -1.22
NPHP4-209ENST00000489180 DNAH9Q9NYC9 4486 aa7.29□□□□□ -1.24
NPHP4-209ENST00000489180 DNAH5Q8TE73 4624 aa7.27□□□□□ -1.25
NPHP4-209ENST00000489180 DNAH1Q9P2D7 4330 aa7.24□□□□□ -1.25
NPHP4-209ENST00000489180 AKAP9Q99996 3911 aa7.23□□□□□ -1.25
NPHP4-209ENST00000489180 KRTAP10-5P60370 271 aa7.21□□□□□ -1.26
NPHP4-209ENST00000489180 DNAH10Q8IVF4 4471 aa7.17□□□□□ -1.26
NPHP4-209ENST00000489180 KRTAP4-1Q9BYQ7 146 aa7.15□□□□□ -1.26
NPHP4-209ENST00000489180 ZNF469Q96JG9 3925 aaPredicted RBP7.13□□□□□ -1.27
NPHP4-209ENST00000489180 PLECQ15149 4684 aaKnown RBP7.12□□□□□ -1.27
NPHP4-209ENST00000489180 KRTAP8-1Q8IUC2 63 aa7.11□□□□□ -1.27
NPHP4-209ENST00000489180 DNAH11Q96DT5 4516 aa7.09□□□□□ -1.28
NPHP4-209ENST00000489180 DNAH2Q9P225 4427 aa7.04□□□□□ -1.28
NPHP4-209ENST00000489180 DNAH17Q9UFH2 4485 aa6.99□□□□□ -1.29
NPHP4-209ENST00000489180 MT1HP80294 61 aa6.97□□□□□ -1.29
NPHP4-209ENST00000489180 VPS13DQ5THJ4 4388 aa6.91□□□□□ -1.3
NPHP4-209ENST00000489180 MT2AP02795 61 aa6.9□□□□□ -1.31
NPHP4-209ENST00000489180 FAT1Q14517 4588 aa6.88□□□□□ -1.31
NPHP4-209ENST00000489180 DNAH8Q96JB1 4490 aa6.87□□□□□ -1.31
NPHP4-209ENST00000489180 DYNC1H1Q14204 4646 aaKnown RBP6.84□□□□□ -1.31
NPHP4-209ENST00000489180 SPRR2GQ9BYE4 73 aa6.84□□□□□ -1.31
NPHP4-209ENST00000489180 LRP1BQ9NZR2 4599 aa6.82□□□□□ -1.32
NPHP4-209ENST00000489180 DNAH3Q8TD57 4116 aa6.81□□□□□ -1.32
NPHP4-209ENST00000489180 MT1FP04733 61 aa6.79□□□□□ -1.32
NPHP4-209ENST00000489180 KRTAP19-5Q3LI72 72 aa6.78□□□□□ -1.32
NPHP4-209ENST00000489180 STARD9Q9P2P6 4700 aa6.77□□□□□ -1.33
NPHP4-209ENST00000489180 SACSQ9NZJ4 4579 aa6.76□□□□□ -1.33
NPHP4-209ENST00000489180 ANK2Q01484 3957 aa6.74□□□□□ -1.33
NPHP4-209ENST00000489180 DNHD1Q96M86 4753 aa6.74□□□□□ -1.33
NPHP4-209ENST00000489180 FAT2Q9NYQ8 4349 aa6.71□□□□□ -1.33
NPHP4-209ENST00000489180 DYNC2H1Q8NCM8 4307 aaKnown RBP6.68□□□□□ -1.34
NPHP4-209ENST00000489180 LCE3CQ5T5A8 94 aa6.67□□□□□ -1.34
NPHP4-209ENST00000489180 RYR1P21817 5038 aa6.65□□□□□ -1.34
NPHP4-209ENST00000489180 APOBP04114 4563 aaKnown RBP6.62□□□□□ -1.35
NPHP4-209ENST00000489180 SPRR2FQ96RM1 72 aa6.6□□□□□ -1.35
NPHP4-209ENST00000489180 VPS13BQ7Z7G8 4022 aa6.56□□□□□ -1.36
NPHP4-209ENST00000489180 KMT2AQ03164 3969 aa6.55□□□□□ -1.36
NPHP4-209ENST00000489180 KRTAP10-7P60409 375 aaPredicted RBP6.54□□□□□ -1.36
NPHP4-209ENST00000489180 FRAS1Q86XX4 4008 aa6.48□□□□□ -1.37
NPHP4-209ENST00000489180 LYSTQ99698 3801 aa6.43□□□□□ -1.38
NPHP4-209ENST00000489180 PRKDCP78527 4128 aaKnown RBP6.43□□□□□ -1.38
NPHP4-209ENST00000489180 MYCBP2O75592 4640 aa6.37□□□□□ -1.39
NPHP4-209ENST00000489180 KRTAP19-1Q8IUB9 90 aa6.37□□□□□ -1.39
NPHP4-209ENST00000489180 KRTAP17-1Q9BYP8 105 aa6.35□□□□□ -1.39
NPHP4-209ENST00000489180 RYR3Q15413 4870 aa6.34□□□□□ -1.4
NPHP4-209ENST00000489180 DNAH7Q8WXX0 4024 aa6.33□□□□□ -1.4
NPHP4-209ENST00000489180 KRTAP19-8Q3LI54 63 aa6.29□□□□□ -1.4
NPHP4-209ENST00000489180 MT1XP80297 61 aa6.27□□□□□ -1.4
NPHP4-209ENST00000489180 LCE3BQ5TA77 95 aa6.27□□□□□ -1.41
NPHP4-209ENST00000489180 CMYA5Q8N3K9 4069 aa6.26□□□□□ -1.41
NPHP4-209ENST00000489180 FAT3Q8TDW7 4589 aa6.26□□□□□ -1.41
NPHP4-209ENST00000489180 DNAH6Q9C0G6 4158 aa6.23□□□□□ -1.41
NPHP4-209ENST00000489180 MT1GP13640 62 aa6.2□□□□□ -1.42
NPHP4-209ENST00000489180 HECTD4Q9Y4D8 3996 aa6.19□□□□□ -1.42
NPHP4-209ENST00000489180 LRP1Q07954 4544 aaKnown RBP6.19□□□□□ -1.42
NPHP4-209ENST00000489180 KRTAP19-4Q3LI73 84 aa6.18□□□□□ -1.42
NPHP4-209ENST00000489180 MT1BP07438 61 aa6.16□□□□□ -1.42
NPHP4-209ENST00000489180 SPRR2EP22531 72 aa6.14□□□□□ -1.43
NPHP4-209ENST00000489180 SPRR2BP35325 72 aa6.14□□□□□ -1.43
NPHP4-209ENST00000489180 SPRR2AP35326 72 aa6.14□□□□□ -1.43
NPHP4-209ENST00000489180 KRTAP12-4P60329 112 aa6.13□□□□□ -1.43
NPHP4-209ENST00000489180 KRTAP4-8A0A0G2JLE6 195 aa6.13□□□□□ -1.43
NPHP4-209ENST00000489180 KRTAP4-8Q9BYQ9 185 aa6.13□□□□□ -1.43
NPHP4-209ENST00000489180 KIAA1109Q2LD37 5005 aa6.12□□□□□ -1.43
NPHP4-209ENST00000489180 KRTAP9-8Q9BYQ0 159 aa6.07□□□□□ -1.44
NPHP4-209ENST00000489180 SPRR5A0A1B0GTR4 108 aa6.03□□□□□ -1.44
NPHP4-209ENST00000489180 RYR2Q92736 4967 aa6.03□□□□□ -1.44
NPHP4-209ENST00000489180 LCE2CQ5TA81 110 aa5.93□□□□□ -1.46
NPHP4-209ENST00000489180 SPRR2DP22532 72 aa5.93□□□□□ -1.46
NPHP4-209ENST00000489180 KRTAP9-3Q9BYQ3 159 aa5.92□□□□□ -1.46
NPHP4-209ENST00000489180 LCE2BO14633 110 aa5.9□□□□□ -1.47
NPHP4-209ENST00000489180 LPAP08519 4548 aa5.89□□□□□ -1.47
NPHP4-209ENST00000489180 LRP2P98164 4655 aa5.88□□□□□ -1.47
NPHP4-209ENST00000489180 HSPG2P98160 4391 aa5.88□□□□□ -1.47
NPHP4-209ENST00000489180 KRTAP4-7Q9BYR0 210 aa5.87□□□□□ -1.47
NPHP4-209ENST00000489180 HERC1Q15751 4861 aa5.86□□□□□ -1.47
NPHP4-209ENST00000489180 PKD1P98161 4303 aa5.85□□□□□ -1.47
NPHP4-209ENST00000489180 LCE3DQ9BYE3 92 aa5.85□□□□□ -1.47
NPHP4-209ENST00000489180 HYDINQ4G0P3 5121 aa5.85□□□□□ -1.47
NPHP4-209ENST00000489180 HERC2O95714 4834 aa5.8□□□□□ -1.48
NPHP4-209ENST00000489180 LCE3EQ5T5B0 92 aa5.75□□□□□ -1.49
NPHP4-209ENST00000489180 PKHD1P08F94 4074 aa5.72□□□□□ -1.49
NPHP4-209ENST00000489180 MT1LQ93083 61 aa5.7□□□□□ -1.5
NPHP4-209ENST00000489180 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
NPHP4-209ENST00000489180 PCLOQ9Y6V0 5065 aa5.68□□□□□ -1.5
NPHP4-209ENST00000489180 KRTAP19-3Q7Z4W3 81 aa5.68□□□□□ -1.5
NPHP4-209ENST00000489180 BIRC6Q9NR09 4857 aa5.65□□□□□ -1.5
NPHP4-209ENST00000489180 MT1EP04732 61 aa5.62□□□□□ -1.51
NPHP4-209ENST00000489180 KMT2CQ8NEZ4 4911 aaKnown RBP5.61□□□□□ -1.51
NPHP4-209ENST00000489180 KRTAP19-2Q3LHN2 52 aa5.61□□□□□ -1.51
NPHP4-209ENST00000489180 TNXBP22105 4242 aa5.61□□□□□ -1.51
NPHP4-209ENST00000489180 LOC100996750A0A140TA64 210 aa5.54□□□□□ -1.52
NPHP4-209ENST00000489180 FLGP20930 4061 aaPredicted RBP5.47□□□□□ -1.53
NPHP4-209ENST00000489180 KRTAP4-3Q9BYR4 195 aa5.46□□□□□ -1.53
NPHP4-209ENST00000489180 MUC17Q685J3 4493 aa5.46□□□□□ -1.54
NPHP4-209ENST00000489180 MT1MQ8N339 61 aa5.46□□□□□ -1.54
NPHP4-209ENST00000489180 PRM1P04553 51 aa5.44□□□□□ -1.54
NPHP4-209ENST00000489180 LCE2DQ5TA82 110 aaPredicted RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms