RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 KRTAP11-1Q8IUC1 163 aa3.92□□□□□ -1.78
HDAC3-209ENST00000486618 ST20-AS1Q8NBB2 130 aa3.92□□□□□ -1.78
HDAC3-209ENST00000486618 SMIM2Q9BVW6 85 aa3.92□□□□□ -1.78
HDAC3-209ENST00000486618 LINC00846Q9NV44 126 aa3.92□□□□□ -1.78
HDAC3-209ENST00000486618 ZNF861PO60384 105 aa3.91□□□□□ -1.78
HDAC3-209ENST00000486618 TYMSOSQ8TAI1 123 aa3.91□□□□□ -1.78
HDAC3-209ENST00000486618 COX7B2Q8TF08 81 aa3.91□□□□□ -1.78
HDAC3-209ENST00000486618 OBSCN-AS1Q96MR7 158 aa3.91□□□□□ -1.78
HDAC3-209ENST00000486618 CRCT1Q9UGL9 99 aa3.91□□□□□ -1.78
HDAC3-209ENST00000486618 C6orf48Q9UBA6 75 aa3.9□□□□□ -1.79
HDAC3-209ENST00000486618 LINC01546A6NGU7 62 aa3.89□□□□□ -1.79
HDAC3-209ENST00000486618 TPRXLQ17RH7 258 aa3.89□□□□□ -1.79
HDAC3-209ENST00000486618 LINC00208Q96KT6 92 aa3.89□□□□□ -1.79
HDAC3-209ENST00000486618 UQCR11O14957 56 aa3.87□□□□□ -1.79
HDAC3-209ENST00000486618 KRTAP7-1Q8IUC3 87 aa3.87□□□□□ -1.79
HDAC3-209ENST00000486618 H0Y9P7 68 aa3.86□□□□□ -1.79
HDAC3-209ENST00000486618 Q8IZM0 81 aa3.86□□□□□ -1.79
HDAC3-209ENST00000486618 LINC00304Q8N9R0 145 aa3.86□□□□□ -1.79
HDAC3-209ENST00000486618 HIGD2AQ9BW72 106 aa3.86□□□□□ -1.79
HDAC3-209ENST00000486618 JMJD7-PLA2G4BH0Y9G9 81 aa3.85□□□□□ -1.79
HDAC3-209ENST00000486618 FSIP2Q5CZC0 6907 aa3.83□□□□□ -1.8
HDAC3-209ENST00000486618 KRTAP13-2Q52LG2 175 aa3.82□□□□□ -1.8
HDAC3-209ENST00000486618 ZCCHC13Q8WW36 166 aaKnown RBP3.82□□□□□ -1.8
HDAC3-209ENST00000486618 ANAPC11Q9NYG5 84 aa3.82□□□□□ -1.8
HDAC3-209ENST00000486618 CDKN2A-AS1Q9UH64 79 aa3.82□□□□□ -1.8
HDAC3-209ENST00000486618 IGKV2-28A0A075B6P5 120 aa3.81□□□□□ -1.8
HDAC3-209ENST00000486618 IGIPA6NJ69 53 aa3.81□□□□□ -1.8
HDAC3-209ENST00000486618 IGKV2D-28P01615 120 aa3.81□□□□□ -1.8
HDAC3-209ENST00000486618 PDE6GP18545 87 aa3.81□□□□□ -1.8
HDAC3-209ENST00000486618 MUC17Q685J3 4493 aa3.81□□□□□ -1.8
HDAC3-209ENST00000486618 SPRR4Q96PI1 79 aa3.79□□□□□ -1.8
HDAC3-209ENST00000486618 SPINK7P58062 85 aa3.78□□□□□ -1.8
HDAC3-209ENST00000486618 LINC00158P58513 81 aa3.78□□□□□ -1.8
HDAC3-209ENST00000486618 PRLHP81277 87 aa3.77□□□□□ -1.81
HDAC3-209ENST00000486618 COX17Q14061 63 aa3.77□□□□□ -1.81
HDAC3-209ENST00000486618 KRTAP13-3Q3SY46 172 aa3.77□□□□□ -1.81
HDAC3-209ENST00000486618 SPATA8Q6RVD6 105 aa3.77□□□□□ -1.81
HDAC3-209ENST00000486618 KRTAP13-1Q8IUC0 172 aa3.77□□□□□ -1.81
HDAC3-209ENST00000486618 PRO2289Q9P1D8 64 aa3.77□□□□□ -1.81
HDAC3-209ENST00000486618 ETDCA0A1B0GVM5 59 aa3.76□□□□□ -1.81
HDAC3-209ENST00000486618 SPINT4Q6UDR6 99 aa3.76□□□□□ -1.81
HDAC3-209ENST00000486618 ZNF625Q96I27 306 aaPredicted RBP3.76□□□□□ -1.81
HDAC3-209ENST00000486618 KRTAP4-1Q9BYQ7 146 aa3.75□□□□□ -1.81
HDAC3-209ENST00000486618 H0YGX0 51 aa3.72□□□□□ -1.81
HDAC3-209ENST00000486618 SPINK1P00995 79 aa3.72□□□□□ -1.81
HDAC3-209ENST00000486618 R4GN34 69 aa3.71□□□□□ -1.82
HDAC3-209ENST00000486618 NCR3O14931 201 aa3.7□□□□□ -1.82
HDAC3-209ENST00000486618 MT1HP80294 61 aa3.7□□□□□ -1.82
HDAC3-209ENST00000486618 LOC110117498A0A087WWA1 95 aa3.69□□□□□ -1.82
HDAC3-209ENST00000486618 COA5Q86WW8 74 aa3.69□□□□□ -1.82
HDAC3-209ENST00000486618 RPS29P62273 56 aaKnown RBP3.68□□□□□ -1.82
HDAC3-209ENST00000486618 SSBP3-AS1Q7Z2R9 100 aa3.68□□□□□ -1.82
HDAC3-209ENST00000486618 M0R2T5 61 aa3.66□□□□□ -1.82
HDAC3-209ENST00000486618 KRTAP10-5P60370 271 aa3.66□□□□□ -1.82
HDAC3-209ENST00000486618 KRTAP19-2Q3LHN2 52 aa3.66□□□□□ -1.82
HDAC3-209ENST00000486618 KCNQ1DNQ9H478 68 aa3.66□□□□□ -1.82
HDAC3-209ENST00000486618 COX7BP24311 80 aa3.64□□□□□ -1.83
HDAC3-209ENST00000486618 A0A1B0GU69 56 aa3.63□□□□□ -1.83
HDAC3-209ENST00000486618 IGKV4-1P06312 121 aa3.63□□□□□ -1.83
HDAC3-209ENST00000486618 PCOTHQ58A44 107 aa3.63□□□□□ -1.83
HDAC3-209ENST00000486618 LINC00472Q9H8W2 130 aa3.63□□□□□ -1.83
HDAC3-209ENST00000486618 COX6B2Q6YFQ2 88 aa3.61□□□□□ -1.83
HDAC3-209ENST00000486618 Q6ZRX8 168 aa3.61□□□□□ -1.83
HDAC3-209ENST00000486618 A0A0G2JQZ4 141 aa3.6□□□□□ -1.83
HDAC3-209ENST00000486618 HRES1P13985 223 aa3.6□□□□□ -1.83
HDAC3-209ENST00000486618 SPRR1AP35321 89 aa3.6□□□□□ -1.83
HDAC3-209ENST00000486618 LCE1FQ5T754 118 aa3.6□□□□□ -1.83
HDAC3-209ENST00000486618 Q96NJ1 140 aa3.6□□□□□ -1.83
HDAC3-209ENST00000486618 ACYP2P14621 99 aa3.59□□□□□ -1.83
HDAC3-209ENST00000486618 C9orf92A6NGG3 77 aa3.58□□□□□ -1.84
HDAC3-209ENST00000486618 DEFB105AQ8NG35 78 aa3.58□□□□□ -1.84
HDAC3-209ENST00000486618 IGLV6-57P01721 117 aa3.57□□□□□ -1.84
HDAC3-209ENST00000486618 KRTAP10-12P60413 245 aa3.57□□□□□ -1.84
HDAC3-209ENST00000486618 FLGP20930 4061 aaPredicted RBP3.51□□□□□ -1.85
HDAC3-209ENST00000486618 INE1O15225 51 aa3.51□□□□□ -1.85
HDAC3-209ENST00000486618 RPL37P61927 97 aaKnown RBP3.51□□□□□ -1.85
HDAC3-209ENST00000486618 Q6ZQY7 126 aa3.51□□□□□ -1.85
HDAC3-209ENST00000486618 LINC00308Q8TCZ7 52 aa3.51□□□□□ -1.85
HDAC3-209ENST00000486618 SPRR1BP22528 89 aa3.5□□□□□ -1.85
HDAC3-209ENST00000486618 KRTAP9-6A8MVA2 160 aa3.47□□□□□ -1.85
HDAC3-209ENST00000486618 SSPOA2VEC9 5147 aa3.46□□□□□ -1.86
HDAC3-209ENST00000486618 KRTAP5-1Q6L8H4 278 aa3.44□□□□□ -1.86
HDAC3-209ENST00000486618 USH2AO75445 5202 aa3.44□□□□□ -1.86
HDAC3-209ENST00000486618 FCGBPQ9Y6R7 5405 aaPredicted RBP3.43□□□□□ -1.86
HDAC3-209ENST00000486618 SMIM11BQ8TCY0 68 aa3.42□□□□□ -1.86
HDAC3-209ENST00000486618 IGLV5-48A0A075B6I7 105 aa3.41□□□□□ -1.86
HDAC3-209ENST00000486618 LCE3CQ5T5A8 94 aa3.39□□□□□ -1.87
HDAC3-209ENST00000486618 Q8N9L7 120 aa3.39□□□□□ -1.87
HDAC3-209ENST00000486618 SYNE2Q8WXH0 6885 aaKnown RBP3.38□□□□□ -1.87
HDAC3-209ENST00000486618 MT2AP02795 61 aa3.38□□□□□ -1.87
HDAC3-209ENST00000486618 LINC00575Q6W349 94 aa3.38□□□□□ -1.87
HDAC3-209ENST00000486618 PLAC4Q8WY50 150 aa3.38□□□□□ -1.87
HDAC3-209ENST00000486618 IGFL1Q6UW32 110 aa3.37□□□□□ -1.87
HDAC3-209ENST00000486618 KRTAP10-10P60014 251 aa3.36□□□□□ -1.87
HDAC3-209ENST00000486618 MACF1Q9UPN3 7388 aaKnown RBP3.36□□□□□ -1.87
HDAC3-209ENST00000486618 MT1FP04733 61 aa3.34□□□□□ -1.87
HDAC3-209ENST00000486618 KRTAP6-3Q3LI67 103 aa3.34□□□□□ -1.87
HDAC3-209ENST00000486618 KRTAP19-6Q3LI70 58 aa3.33□□□□□ -1.88
HDAC3-209ENST00000486618 DSCR10P59022 87 aa3.3□□□□□ -1.88
HDAC3-209ENST00000486618 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms