RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 SVEP1Q4LDE5 3571 aa0.27□□□□□ -2.37
VPS13A-211ENST00000484581 SNRPGP15A8MWD9 76 aa0.27□□□□□ -2.37
VPS13A-211ENST00000484581 H3BNG1 76 aa0.27□□□□□ -2.37
VPS13A-211ENST00000484581 H3BUA1 57 aa0.27□□□□□ -2.37
VPS13A-211ENST00000484581 CENPEQ02224 2701 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 TRIOO75962 3097 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 SMIM27A0A1W2PRY6 76 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 TFF3Q07654 80 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 AGLP35573 1532 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 MAST1Q9Y2H9 1570 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 KIF1AQ12756 1690 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 LY75O60449 1722 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 TACC2O95359 2948 aa0.26□□□□□ -2.37
VPS13A-211ENST00000484581 ATMQ13315 3056 aa0.25□□□□□ -2.37
VPS13A-211ENST00000484581 KNL1Q8NG31 2342 aa0.25□□□□□ -2.37
VPS13A-211ENST00000484581 CROCC2H7BZ55 1655 aa0.25□□□□□ -2.37
VPS13A-211ENST00000484581 SPRR2DP22532 72 aa0.25□□□□□ -2.37
VPS13A-211ENST00000484581 CHD7Q9P2D1 2997 aa0.25□□□□□ -2.37
VPS13A-211ENST00000484581 ZZEF1O43149 2961 aa0.24□□□□□ -2.37
VPS13A-211ENST00000484581 FAM186AA6NE01 2351 aa0.24□□□□□ -2.37
VPS13A-211ENST00000484581 WNK1Q9H4A3 2382 aa0.24□□□□□ -2.37
VPS13A-211ENST00000484581 SRRM2Q9UQ35 2752 aaKnown RBP0.24□□□□□ -2.37
VPS13A-211ENST00000484581 USH2AO75445 5202 aa0.24□□□□□ -2.37
VPS13A-211ENST00000484581 MROH2AA6NES4 1674 aa0.24□□□□□ -2.37
VPS13A-211ENST00000484581 SMG1Q96Q15 3661 aaKnown RBP0.24□□□□□ -2.37
VPS13A-211ENST00000484581 ABCC8Q09428 1581 aa0.23□□□□□ -2.37
VPS13A-211ENST00000484581 KMT2AQ03164 3969 aa0.23□□□□□ -2.37
VPS13A-211ENST00000484581 DNAH14Q0VDD8 3507 aa0.23□□□□□ -2.37
VPS13A-211ENST00000484581 ADCY10Q96PN6 1610 aa0.23□□□□□ -2.37
VPS13A-211ENST00000484581 TNXBP22105 4242 aa0.23□□□□□ -2.37
VPS13A-211ENST00000484581 CUBNO60494 3623 aa0.22□□□□□ -2.37
VPS13A-211ENST00000484581 NOP10Q9NPE3 64 aaKnown RBP0.22□□□□□ -2.37
VPS13A-211ENST00000484581 WDFY3Q8IZQ1 3526 aa0.22□□□□□ -2.37
VPS13A-211ENST00000484581 CDC42BPAQ5VT25 1732 aa0.21□□□□□ -2.38
VPS13A-211ENST00000484581 TOMM5Q8N4H5 51 aa0.21□□□□□ -2.38
VPS13A-211ENST00000484581 PRKDCP78527 4128 aaKnown RBP0.21□□□□□ -2.38
VPS13A-211ENST00000484581 ANKRD36CQ5JPF3 1778 aa0.2□□□□□ -2.38
VPS13A-211ENST00000484581 MUC12Q9UKN1 5478 aa0.2□□□□□ -2.38
VPS13A-211ENST00000484581 LPAP08519 4548 aa0.2□□□□□ -2.38
VPS13A-211ENST00000484581 IGLV5-48A0A075B6I7 105 aa0.2□□□□□ -2.38
VPS13A-211ENST00000484581 DEFB110Q30KQ9 67 aa0.2□□□□□ -2.38
VPS13A-211ENST00000484581 VPS13CQ709C8 3753 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 SPENQ96T58 3664 aaKnown RBP0.19□□□□□ -2.38
VPS13A-211ENST00000484581 LMO7Q8WWI1 1683 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 C9orf92A6NGG3 77 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 M0QY20 66 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 SPRR2BP35325 72 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 SMIM2Q9BVW6 85 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 ABCA5Q8WWZ7 1642 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 NBASA2RRP1 2371 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 APC2O95996 2303 aa0.19□□□□□ -2.38
VPS13A-211ENST00000484581 TOGARAM1Q9Y4F4 1720 aa0.18□□□□□ -2.38
VPS13A-211ENST00000484581 FAT3Q8TDW7 4589 aa0.18□□□□□ -2.38
VPS13A-211ENST00000484581 NRXN3Q9Y4C0 1643 aa0.18□□□□□ -2.38
VPS13A-211ENST00000484581 SPRR2EP22531 72 aa0.18□□□□□ -2.38
VPS13A-211ENST00000484581 SPRR2AP35326 72 aa0.18□□□□□ -2.38
VPS13A-211ENST00000484581 KRTAP19-6Q3LI70 58 aa0.18□□□□□ -2.38
VPS13A-211ENST00000484581 LAMA5O15230 3695 aa0.17□□□□□ -2.38
VPS13A-211ENST00000484581 MT4P47944 62 aa0.17□□□□□ -2.38
VPS13A-211ENST00000484581 ACACAQ13085 2346 aa0.17□□□□□ -2.38
VPS13A-211ENST00000484581 SPRR2GQ9BYE4 73 aa0.17□□□□□ -2.38
VPS13A-211ENST00000484581 ALMS1Q8TCU4 4167 aa0.16□□□□□ -2.38
VPS13A-211ENST00000484581 LINC01546A6NGU7 62 aa0.16□□□□□ -2.38
VPS13A-211ENST00000484581 DYNC1H1Q14204 4646 aaKnown RBP0.15□□□□□ -2.38
VPS13A-211ENST00000484581 MMP24-AS1A0A0U1RRL7 71 aa0.15□□□□□ -2.39
VPS13A-211ENST00000484581 KIF21BO75037 1637 aa0.15□□□□□ -2.39
VPS13A-211ENST00000484581 NFAT5O94916 1531 aa0.14□□□□□ -2.39
VPS13A-211ENST00000484581 STARD9Q9P2P6 4700 aa0.14□□□□□ -2.39
VPS13A-211ENST00000484581 TNP1P09430 55 aa0.14□□□□□ -2.39
VPS13A-211ENST00000484581 KRTAP6-2Q3LI66 62 aa0.14□□□□□ -2.39
VPS13A-211ENST00000484581 HECTD4Q9Y4D8 3996 aa0.14□□□□□ -2.39
VPS13A-211ENST00000484581 DNAH7Q8WXX0 4024 aa0.14□□□□□ -2.39
VPS13A-211ENST00000484581 LRP2P98164 4655 aa0.13□□□□□ -2.39
VPS13A-211ENST00000484581 NDUFA1O15239 70 aa0.13□□□□□ -2.39
VPS13A-211ENST00000484581 DEFB131AP59861 70 aa0.13□□□□□ -2.39
VPS13A-211ENST00000484581 IQGAP2Q13576 1575 aa0.13□□□□□ -2.39
VPS13A-211ENST00000484581 IQGAP1P46940 1657 aa0.13□□□□□ -2.39
VPS13A-211ENST00000484581 A0A1B0GUL6 1792 aa0.13□□□□□ -2.39
VPS13A-211ENST00000484581 SMR3BP02814 79 aaPredicted RBP0.12□□□□□ -2.39
VPS13A-211ENST00000484581 POLR2KP53803 58 aaKnown RBP0.12□□□□□ -2.39
VPS13A-211ENST00000484581 DMDP11532 3685 aa0.12□□□□□ -2.39
VPS13A-211ENST00000484581 HSPG2P98160 4391 aa0.12□□□□□ -2.39
VPS13A-211ENST00000484581 SPRR2FQ96RM1 72 aa0.11□□□□□ -2.39
VPS13A-211ENST00000484581 LYSTQ99698 3801 aa0.11□□□□□ -2.39
VPS13A-211ENST00000484581 PKHD1P08F94 4074 aa0.11□□□□□ -2.39
VPS13A-211ENST00000484581 LRP1BQ9NZR2 4599 aa0.1□□□□□ -2.39
VPS13A-211ENST00000484581 M0QZ58 72 aa0.1□□□□□ -2.39
VPS13A-211ENST00000484581 FAM208AQ9UK61 1670 aaKnown RBP0.1□□□□□ -2.39
VPS13A-211ENST00000484581 A8MTW9 85 aa0.09□□□□□ -2.4
VPS13A-211ENST00000484581 TRPM2O94759 1503 aa0.08□□□□□ -2.4
VPS13A-211ENST00000484581 SPART-AS1P0CW21 52 aa0.08□□□□□ -2.4
VPS13A-211ENST00000484581 CLPSL2Q6UWE3 100 aa0.08□□□□□ -2.4
VPS13A-211ENST00000484581 AKAP9Q99996 3911 aa0.08□□□□□ -2.4
VPS13A-211ENST00000484581 DDX60Q8IY21 1712 aaKnown RBP0.07□□□□□ -2.4
VPS13A-211ENST00000484581 PLECQ15149 4684 aaKnown RBP0.07□□□□□ -2.4
VPS13A-211ENST00000484581 DNAH9Q9NYC9 4486 aa0.07□□□□□ -2.4
VPS13A-211ENST00000484581 DNAH1Q9P2D7 4330 aa0.06□□□□□ -2.4
VPS13A-211ENST00000484581 SACSQ9NZJ4 4579 aa0.06□□□□□ -2.4
VPS13A-211ENST00000484581 TRRAPQ9Y4A5 3859 aa0.06□□□□□ -2.4
VPS13A-211ENST00000484581 APOBP04114 4563 aaKnown RBP0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms