RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CSMD3Q7Z407 3707 aa8.15□□□□□ -1.1
CCDC88B-204ENST00000463837 LCE3AQ5TA76 89 aa8.1□□□□□ -1.11
CCDC88B-204ENST00000463837 ZNF469Q96JG9 3925 aaPredicted RBP8.03□□□□□ -1.12
CCDC88B-204ENST00000463837 CRCT1Q9UGL9 99 aa8.02□□□□□ -1.13
CCDC88B-204ENST00000463837 DNAH9Q9NYC9 4486 aa8.01□□□□□ -1.13
CCDC88B-204ENST00000463837 DNAH2Q9P225 4427 aa7.91□□□□□ -1.14
CCDC88B-204ENST00000463837 DNAH1Q9P2D7 4330 aa7.89□□□□□ -1.15
CCDC88B-204ENST00000463837 DNAH10Q8IVF4 4471 aa7.88□□□□□ -1.15
CCDC88B-204ENST00000463837 DNAH5Q8TE73 4624 aa7.87□□□□□ -1.15
CCDC88B-204ENST00000463837 AKAP9Q99996 3911 aa7.87□□□□□ -1.15
CCDC88B-204ENST00000463837 DNAH11Q96DT5 4516 aa7.85□□□□□ -1.15
CCDC88B-204ENST00000463837 DNAH17Q9UFH2 4485 aa7.82□□□□□ -1.16
CCDC88B-204ENST00000463837 VPS13DQ5THJ4 4388 aa7.73□□□□□ -1.17
CCDC88B-204ENST00000463837 PLECQ15149 4684 aaKnown RBP7.71□□□□□ -1.17
CCDC88B-204ENST00000463837 KRTAP8-1Q8IUC2 63 aa7.71□□□□□ -1.18
CCDC88B-204ENST00000463837 DNHD1Q96M86 4753 aa7.69□□□□□ -1.18
CCDC88B-204ENST00000463837 KRTAP4-1Q9BYQ7 146 aa7.62□□□□□ -1.19
CCDC88B-204ENST00000463837 DNAH3Q8TD57 4116 aa7.61□□□□□ -1.19
CCDC88B-204ENST00000463837 SPRR2GQ9BYE4 73 aa7.6□□□□□ -1.19
CCDC88B-204ENST00000463837 KRTAP10-5P60370 271 aa7.57□□□□□ -1.2
CCDC88B-204ENST00000463837 FAT1Q14517 4588 aa7.55□□□□□ -1.2
CCDC88B-204ENST00000463837 DYNC1H1Q14204 4646 aaKnown RBP7.51□□□□□ -1.21
CCDC88B-204ENST00000463837 MT1HP80294 61 aa7.5□□□□□ -1.21
CCDC88B-204ENST00000463837 DNAH8Q96JB1 4490 aa7.49□□□□□ -1.21
CCDC88B-204ENST00000463837 SACSQ9NZJ4 4579 aa7.49□□□□□ -1.21
CCDC88B-204ENST00000463837 DYNC2H1Q8NCM8 4307 aaKnown RBP7.45□□□□□ -1.22
CCDC88B-204ENST00000463837 LRP1BQ9NZR2 4599 aa7.43□□□□□ -1.22
CCDC88B-204ENST00000463837 MT2AP02795 61 aa7.41□□□□□ -1.22
CCDC88B-204ENST00000463837 STARD9Q9P2P6 4700 aa7.39□□□□□ -1.23
CCDC88B-204ENST00000463837 FAT2Q9NYQ8 4349 aa7.34□□□□□ -1.23
CCDC88B-204ENST00000463837 KRTAP19-4Q3LI73 84 aa7.29□□□□□ -1.24
CCDC88B-204ENST00000463837 RYR1P21817 5038 aa7.28□□□□□ -1.24
CCDC88B-204ENST00000463837 PRKDCP78527 4128 aaKnown RBP7.26□□□□□ -1.25
CCDC88B-204ENST00000463837 MT1FP04733 61 aa7.23□□□□□ -1.25
CCDC88B-204ENST00000463837 LCE3CQ5T5A8 94 aa7.23□□□□□ -1.25
CCDC88B-204ENST00000463837 ANK2Q01484 3957 aa7.21□□□□□ -1.26
CCDC88B-204ENST00000463837 KRTAP19-5Q3LI72 72 aa7.19□□□□□ -1.26
CCDC88B-204ENST00000463837 APOBP04114 4563 aaKnown RBP7.18□□□□□ -1.26
CCDC88B-204ENST00000463837 SPRR2FQ96RM1 72 aa7.15□□□□□ -1.26
CCDC88B-204ENST00000463837 DNAH6Q9C0G6 4158 aa7.15□□□□□ -1.27
CCDC88B-204ENST00000463837 KRTAP10-7P60409 375 aaPredicted RBP7.14□□□□□ -1.27
CCDC88B-204ENST00000463837 CMYA5Q8N3K9 4069 aa7.09□□□□□ -1.28
CCDC88B-204ENST00000463837 KMT2AQ03164 3969 aa7.08□□□□□ -1.28
CCDC88B-204ENST00000463837 VPS13BQ7Z7G8 4022 aa7.08□□□□□ -1.28
CCDC88B-204ENST00000463837 KRTAP19-8Q3LI54 63 aa7.06□□□□□ -1.28
CCDC88B-204ENST00000463837 SPRR5A0A1B0GTR4 108 aa7.06□□□□□ -1.28
CCDC88B-204ENST00000463837 MYCBP2O75592 4640 aa7.04□□□□□ -1.28
CCDC88B-204ENST00000463837 RYR3Q15413 4870 aa7.02□□□□□ -1.29
CCDC88B-204ENST00000463837 KRTAP19-1Q8IUB9 90 aa7.01□□□□□ -1.29
CCDC88B-204ENST00000463837 KIAA1109Q2LD37 5005 aa7□□□□□ -1.29
CCDC88B-204ENST00000463837 DNAH7Q8WXX0 4024 aa6.99□□□□□ -1.29
CCDC88B-204ENST00000463837 LYSTQ99698 3801 aa6.98□□□□□ -1.29
CCDC88B-204ENST00000463837 KRTAP17-1Q9BYP8 105 aa6.98□□□□□ -1.29
CCDC88B-204ENST00000463837 RYR2Q92736 4967 aa6.9□□□□□ -1.3
CCDC88B-204ENST00000463837 FRAS1Q86XX4 4008 aa6.9□□□□□ -1.31
CCDC88B-204ENST00000463837 HECTD4Q9Y4D8 3996 aa6.87□□□□□ -1.31
CCDC88B-204ENST00000463837 FAT3Q8TDW7 4589 aa6.85□□□□□ -1.31
CCDC88B-204ENST00000463837 MT1XP80297 61 aa6.83□□□□□ -1.32
CCDC88B-204ENST00000463837 BIRC6Q9NR09 4857 aa6.8□□□□□ -1.32
CCDC88B-204ENST00000463837 LRP1Q07954 4544 aaKnown RBP6.79□□□□□ -1.32
CCDC88B-204ENST00000463837 HSPG2P98160 4391 aa6.74□□□□□ -1.33
CCDC88B-204ENST00000463837 MT1BP07438 61 aa6.73□□□□□ -1.33
CCDC88B-204ENST00000463837 SPRR2EP22531 72 aa6.72□□□□□ -1.33
CCDC88B-204ENST00000463837 SPRR2BP35325 72 aa6.72□□□□□ -1.33
CCDC88B-204ENST00000463837 SPRR2AP35326 72 aa6.72□□□□□ -1.33
CCDC88B-204ENST00000463837 HERC1Q15751 4861 aa6.66□□□□□ -1.34
CCDC88B-204ENST00000463837 KRTAP9-8Q9BYQ0 159 aa6.63□□□□□ -1.35
CCDC88B-204ENST00000463837 KRTAP12-4P60329 112 aa6.6□□□□□ -1.35
CCDC88B-204ENST00000463837 HERC2O95714 4834 aa6.59□□□□□ -1.35
CCDC88B-204ENST00000463837 HYDINQ4G0P3 5121 aa6.57□□□□□ -1.36
CCDC88B-204ENST00000463837 LCE3BQ5TA77 95 aa6.57□□□□□ -1.36
CCDC88B-204ENST00000463837 LCE2CQ5TA81 110 aa6.55□□□□□ -1.36
CCDC88B-204ENST00000463837 SPRR2DP22532 72 aa6.52□□□□□ -1.37
CCDC88B-204ENST00000463837 MT1GP13640 62 aa6.52□□□□□ -1.37
CCDC88B-204ENST00000463837 LCE2BO14633 110 aa6.5□□□□□ -1.37
CCDC88B-204ENST00000463837 KRTAP4-8A0A0G2JLE6 195 aa6.49□□□□□ -1.37
CCDC88B-204ENST00000463837 KRTAP4-8Q9BYQ9 185 aa6.49□□□□□ -1.37
CCDC88B-204ENST00000463837 KRTAP9-3Q9BYQ3 159 aa6.48□□□□□ -1.37
CCDC88B-204ENST00000463837 LRP2P98164 4655 aa6.47□□□□□ -1.37
CCDC88B-204ENST00000463837 PKD1P98161 4303 aa6.45□□□□□ -1.38
CCDC88B-204ENST00000463837 PKHD1P08F94 4074 aa6.43□□□□□ -1.38
CCDC88B-204ENST00000463837 PKHD1L1Q86WI1 4243 aa6.39□□□□□ -1.39
CCDC88B-204ENST00000463837 PCLOQ9Y6V0 5065 aa6.37□□□□□ -1.39
CCDC88B-204ENST00000463837 KRTAP19-2Q3LHN2 52 aa6.36□□□□□ -1.39
CCDC88B-204ENST00000463837 KRTAP4-7Q9BYR0 210 aa6.25□□□□□ -1.41
CCDC88B-204ENST00000463837 LCE3DQ9BYE3 92 aa6.24□□□□□ -1.41
CCDC88B-204ENST00000463837 KMT2CQ8NEZ4 4911 aaKnown RBP6.23□□□□□ -1.41
CCDC88B-204ENST00000463837 MT1LQ93083 61 aa6.22□□□□□ -1.41
CCDC88B-204ENST00000463837 LPAP08519 4548 aa6.22□□□□□ -1.41
CCDC88B-204ENST00000463837 LCE3EQ5T5B0 92 aa6.19□□□□□ -1.42
CCDC88B-204ENST00000463837 TNXBP22105 4242 aa6.18□□□□□ -1.42
CCDC88B-204ENST00000463837 KRTAP19-3Q7Z4W3 81 aa6.16□□□□□ -1.42
CCDC88B-204ENST00000463837 MUC17Q685J3 4493 aa6.14□□□□□ -1.43
CCDC88B-204ENST00000463837 MT1EP04732 61 aa6.13□□□□□ -1.43
CCDC88B-204ENST00000463837 FLGP20930 4061 aaPredicted RBP6.12□□□□□ -1.43
CCDC88B-204ENST00000463837 KRTAP9-2Q9BYQ4 174 aa6.12□□□□□ -1.43
CCDC88B-204ENST00000463837 EPPK1P58107 5090 aaKnown RBP6.11□□□□□ -1.43
CCDC88B-204ENST00000463837 LCE2DQ5TA82 110 aaPredicted RBP5.99□□□□□ -1.45
CCDC88B-204ENST00000463837 ABCA13Q86UQ4 5058 aa5.99□□□□□ -1.45
CCDC88B-204ENST00000463837 KRTAP19-6Q3LI70 58 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms