RNA–Protein interactions for RNA: ENST00000461221.5

BRCA1-205, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 5,693 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-205ENST00000461221 DNAH9Q9NYC9 4486 aa3.67□□□□□ -1.82
BRCA1-205ENST00000461221 LORP23490 312 aaPredicted RBP3.65□□□□□ -1.82
BRCA1-205ENST00000461221 ZANQ9Y493 2812 aa3.65□□□□□ -1.82
BRCA1-205ENST00000461221 FRAS1Q86XX4 4008 aa3.64□□□□□ -1.83
BRCA1-205ENST00000461221 OTOGQ6ZRI0 2925 aa3.64□□□□□ -1.83
BRCA1-205ENST00000461221 MXRA5Q9NR99 2828 aa3.62□□□□□ -1.83
BRCA1-205ENST00000461221 KRTAP4-5Q9BYR2 181 aa3.61□□□□□ -1.83
BRCA1-205ENST00000461221 PKD1L1Q8TDX9 2849 aa3.61□□□□□ -1.83
BRCA1-205ENST00000461221 VWFP04275 2813 aa3.6□□□□□ -1.83
BRCA1-205ENST00000461221 DNAH10Q8IVF4 4471 aa3.59□□□□□ -1.83
BRCA1-205ENST00000461221 DNAH6Q9C0G6 4158 aa3.59□□□□□ -1.83
BRCA1-205ENST00000461221 FBN1P35555 2871 aaKnown RBP3.57□□□□□ -1.84
BRCA1-205ENST00000461221 PRKDCP78527 4128 aaKnown RBP3.57□□□□□ -1.84
BRCA1-205ENST00000461221 FBN3Q75N90 2809 aa3.57□□□□□ -1.84
BRCA1-205ENST00000461221 DYNC2H1Q8NCM8 4307 aaKnown RBP3.56□□□□□ -1.84
BRCA1-205ENST00000461221 KMT2AQ03164 3969 aa3.55□□□□□ -1.84
BRCA1-205ENST00000461221 HUWE1Q7Z6Z7 4374 aaKnown RBP3.55□□□□□ -1.84
BRCA1-205ENST00000461221 KRTAP10-7P60409 375 aaPredicted RBP3.54□□□□□ -1.84
BRCA1-205ENST00000461221 MEGF8Q7Z7M0 2845 aa3.53□□□□□ -1.84
BRCA1-205ENST00000461221 VPS13DQ5THJ4 4388 aa3.52□□□□□ -1.85
BRCA1-205ENST00000461221 HECTD4Q9Y4D8 3996 aa3.52□□□□□ -1.85
BRCA1-205ENST00000461221 KRTAP19-4Q3LI73 84 aa3.49□□□□□ -1.85
BRCA1-205ENST00000461221 FAT2Q9NYQ8 4349 aa3.49□□□□□ -1.85
BRCA1-205ENST00000461221 ALMS1Q8TCU4 4167 aa3.48□□□□□ -1.85
BRCA1-205ENST00000461221 DNAH2Q9P225 4427 aa3.45□□□□□ -1.86
BRCA1-205ENST00000461221 SPRR2GQ9BYE4 73 aa3.45□□□□□ -1.86
BRCA1-205ENST00000461221 MT1HP80294 61 aa3.44□□□□□ -1.86
BRCA1-205ENST00000461221 LCE3CQ5T5A8 94 aa3.44□□□□□ -1.86
BRCA1-205ENST00000461221 SPRR2FQ96RM1 72 aa3.44□□□□□ -1.86
BRCA1-205ENST00000461221 KRTAP19-5Q3LI72 72 aa3.43□□□□□ -1.86
BRCA1-205ENST00000461221 VPS13BQ7Z7G8 4022 aa3.42□□□□□ -1.86
BRCA1-205ENST00000461221 MT2AP02795 61 aa3.42□□□□□ -1.86
BRCA1-205ENST00000461221 DNAH8Q96JB1 4490 aa3.41□□□□□ -1.86
BRCA1-205ENST00000461221 PKD1P98161 4303 aa3.39□□□□□ -1.87
BRCA1-205ENST00000461221 SRRM2Q9UQ35 2752 aaKnown RBP3.38□□□□□ -1.87
BRCA1-205ENST00000461221 KRTAP4-1Q9BYQ7 146 aa3.36□□□□□ -1.87
BRCA1-205ENST00000461221 PKHD1P08F94 4074 aa3.35□□□□□ -1.87
BRCA1-205ENST00000461221 DNAH17Q9UFH2 4485 aa3.34□□□□□ -1.87
BRCA1-205ENST00000461221 MT1FP04733 61 aa3.31□□□□□ -1.88
BRCA1-205ENST00000461221 STARD9Q9P2P6 4700 aa3.29□□□□□ -1.88
BRCA1-205ENST00000461221 DNAH11Q96DT5 4516 aa3.29□□□□□ -1.88
BRCA1-205ENST00000461221 PLECQ15149 4684 aaKnown RBP3.29□□□□□ -1.88
BRCA1-205ENST00000461221 HYDINQ4G0P3 5121 aa3.28□□□□□ -1.89
BRCA1-205ENST00000461221 SPRR2EP22531 72 aa3.25□□□□□ -1.89
BRCA1-205ENST00000461221 SPRR2BP35325 72 aa3.25□□□□□ -1.89
BRCA1-205ENST00000461221 SPRR2AP35326 72 aa3.25□□□□□ -1.89
BRCA1-205ENST00000461221 DNAH5Q8TE73 4624 aa3.23□□□□□ -1.89
BRCA1-205ENST00000461221 LCE3BQ5TA77 95 aa3.23□□□□□ -1.89
BRCA1-205ENST00000461221 SACSQ9NZJ4 4579 aa3.2□□□□□ -1.9
BRCA1-205ENST00000461221 MYCBP2O75592 4640 aa3.2□□□□□ -1.9
BRCA1-205ENST00000461221 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
BRCA1-205ENST00000461221 PKHD1L1Q86WI1 4243 aa3.16□□□□□ -1.9
BRCA1-205ENST00000461221 SPRR2DP22532 72 aa3.16□□□□□ -1.9
BRCA1-205ENST00000461221 KRTAP19-8Q3LI54 63 aa3.16□□□□□ -1.9
BRCA1-205ENST00000461221 DNHD1Q96M86 4753 aa3.15□□□□□ -1.91
BRCA1-205ENST00000461221 FAT3Q8TDW7 4589 aa3.15□□□□□ -1.91
BRCA1-205ENST00000461221 LCE2BO14633 110 aa3.13□□□□□ -1.91
BRCA1-205ENST00000461221 MT1GP13640 62 aa3.13□□□□□ -1.91
BRCA1-205ENST00000461221 TNXBP22105 4242 aa3.11□□□□□ -1.91
BRCA1-205ENST00000461221 LCE3DQ9BYE3 92 aa3.11□□□□□ -1.91
BRCA1-205ENST00000461221 FAT1Q14517 4588 aa3.08□□□□□ -1.92
BRCA1-205ENST00000461221 LCE3EQ5T5B0 92 aa3.08□□□□□ -1.92
BRCA1-205ENST00000461221 MT1XP80297 61 aa3.06□□□□□ -1.92
BRCA1-205ENST00000461221 HSPG2P98160 4391 aa3.06□□□□□ -1.92
BRCA1-205ENST00000461221 KRTAP19-1Q8IUB9 90 aa3.05□□□□□ -1.92
BRCA1-205ENST00000461221 LRP1Q07954 4544 aaKnown RBP3.03□□□□□ -1.92
BRCA1-205ENST00000461221 LRP1BQ9NZR2 4599 aa3.03□□□□□ -1.92
BRCA1-205ENST00000461221 LPAP08519 4548 aa3.02□□□□□ -1.93
BRCA1-205ENST00000461221 SPRR5A0A1B0GTR4 108 aa3.01□□□□□ -1.93
BRCA1-205ENST00000461221 APOBP04114 4563 aaKnown RBP3□□□□□ -1.93
BRCA1-205ENST00000461221 DYNC1H1Q14204 4646 aaKnown RBP2.98□□□□□ -1.93
BRCA1-205ENST00000461221 MT1BP07438 61 aa2.98□□□□□ -1.93
BRCA1-205ENST00000461221 HERC1Q15751 4861 aa2.97□□□□□ -1.93
BRCA1-205ENST00000461221 LCE2CQ5TA81 110 aa2.94□□□□□ -1.94
BRCA1-205ENST00000461221 KMT2CQ8NEZ4 4911 aaKnown RBP2.92□□□□□ -1.94
BRCA1-205ENST00000461221 KRTAP4-8A0A0G2JLE6 195 aa2.91□□□□□ -1.94
BRCA1-205ENST00000461221 KRTAP4-8Q9BYQ9 185 aa2.91□□□□□ -1.94
BRCA1-205ENST00000461221 KRTAP19-3Q7Z4W3 81 aa2.91□□□□□ -1.94
BRCA1-205ENST00000461221 LCE2DQ5TA82 110 aaPredicted RBP2.9□□□□□ -1.95
BRCA1-205ENST00000461221 MT1LQ93083 61 aa2.89□□□□□ -1.95
BRCA1-205ENST00000461221 RYR3Q15413 4870 aa2.89□□□□□ -1.95
BRCA1-205ENST00000461221 KRTAP9-8Q9BYQ0 159 aa2.88□□□□□ -1.95
BRCA1-205ENST00000461221 MT3P25713 68 aa2.86□□□□□ -1.95
BRCA1-205ENST00000461221 KRTAP9-3Q9BYQ3 159 aa2.85□□□□□ -1.95
BRCA1-205ENST00000461221 PRM1P04553 51 aa2.82□□□□□ -1.96
BRCA1-205ENST00000461221 RYR1P21817 5038 aa2.81□□□□□ -1.96
BRCA1-205ENST00000461221 RYR2Q92736 4967 aa2.81□□□□□ -1.96
BRCA1-205ENST00000461221 ABCA13Q86UQ4 5058 aa2.81□□□□□ -1.96
BRCA1-205ENST00000461221 MT1EP04732 61 aa2.8□□□□□ -1.96
BRCA1-205ENST00000461221 KRTAP4-7Q9BYR0 210 aa2.76□□□□□ -1.97
BRCA1-205ENST00000461221 MT4P47944 62 aa2.75□□□□□ -1.97
BRCA1-205ENST00000461221 LCE1BQ5T7P3 118 aa2.75□□□□□ -1.97
BRCA1-205ENST00000461221 MT1MQ8N339 61 aa2.74□□□□□ -1.97
BRCA1-205ENST00000461221 FLGP20930 4061 aaPredicted RBP2.73□□□□□ -1.97
BRCA1-205ENST00000461221 LCE1DQ5T752 114 aa2.72□□□□□ -1.97
BRCA1-205ENST00000461221 MUC17Q685J3 4493 aa2.71□□□□□ -1.98
BRCA1-205ENST00000461221 EPPK1P58107 5090 aaKnown RBP2.67□□□□□ -1.98
BRCA1-205ENST00000461221 PCLOQ9Y6V0 5065 aa2.66□□□□□ -1.98
BRCA1-205ENST00000461221 KRTAP17-1Q9BYP8 105 aa2.64□□□□□ -1.99
BRCA1-205ENST00000461221 LOC100996750A0A140TA64 210 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms