RNA–Protein interactions for RNA: ENST00000461074.1

MCF2L2-205, Transcript of MCF.2 cell line derived transforming sequence-like 2, humanhuman

TSL 1 (best)

Gene MCF2L2, Length 7,666 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L2-205ENST00000461074 MT1HP80294 61 aa3.38□□□□□ -1.87
MCF2L2-205ENST00000461074 SVEP1Q4LDE5 3571 aa3.36□□□□□ -1.87
MCF2L2-205ENST00000461074 LORP23490 312 aaPredicted RBP3.35□□□□□ -1.87
MCF2L2-205ENST00000461074 CSMD2Q7Z408 3487 aa3.35□□□□□ -1.87
MCF2L2-205ENST00000461074 BSNQ9UPA5 3926 aa3.35□□□□□ -1.87
MCF2L2-205ENST00000461074 KRTAP10-5P60370 271 aa3.34□□□□□ -1.88
MCF2L2-205ENST00000461074 MT2AP02795 61 aa3.33□□□□□ -1.88
MCF2L2-205ENST00000461074 DNAH10Q8IVF4 4471 aa3.33□□□□□ -1.88
MCF2L2-205ENST00000461074 KRTAP10-7P60409 375 aaPredicted RBP3.32□□□□□ -1.88
MCF2L2-205ENST00000461074 CUBNO60494 3623 aa3.27□□□□□ -1.89
MCF2L2-205ENST00000461074 DNAH11Q96DT5 4516 aa3.26□□□□□ -1.89
MCF2L2-205ENST00000461074 TRRAPQ9Y4A5 3859 aa3.26□□□□□ -1.89
MCF2L2-205ENST00000461074 KRTAP4-1Q9BYQ7 146 aa3.25□□□□□ -1.89
MCF2L2-205ENST00000461074 LCE3CQ5T5A8 94 aa3.22□□□□□ -1.89
MCF2L2-205ENST00000461074 DNAH9Q9NYC9 4486 aa3.22□□□□□ -1.89
MCF2L2-205ENST00000461074 KRTAP19-8Q3LI54 63 aa3.2□□□□□ -1.9
MCF2L2-205ENST00000461074 VPS13CQ709C8 3753 aa3.2□□□□□ -1.9
MCF2L2-205ENST00000461074 MT1FP04733 61 aa3.2□□□□□ -1.9
MCF2L2-205ENST00000461074 SPRR2FQ96RM1 72 aa3.2□□□□□ -1.9
MCF2L2-205ENST00000461074 DNAH5Q8TE73 4624 aa3.19□□□□□ -1.9
MCF2L2-205ENST00000461074 KRTAP19-5Q3LI72 72 aa3.18□□□□□ -1.9
MCF2L2-205ENST00000461074 DYNC1H1Q14204 4646 aaKnown RBP3.15□□□□□ -1.91
MCF2L2-205ENST00000461074 DNAH17Q9UFH2 4485 aa3.12□□□□□ -1.91
MCF2L2-205ENST00000461074 DNAH6Q9C0G6 4158 aa3.12□□□□□ -1.91
MCF2L2-205ENST00000461074 VPS13DQ5THJ4 4388 aa3.12□□□□□ -1.91
MCF2L2-205ENST00000461074 PLECQ15149 4684 aaKnown RBP3.12□□□□□ -1.91
MCF2L2-205ENST00000461074 ZNF469Q96JG9 3925 aaPredicted RBP3.12□□□□□ -1.91
MCF2L2-205ENST00000461074 DNAH3Q8TD57 4116 aa3.1□□□□□ -1.91
MCF2L2-205ENST00000461074 DYNC2H1Q8NCM8 4307 aaKnown RBP3.1□□□□□ -1.91
MCF2L2-205ENST00000461074 AKAP9Q99996 3911 aa3.1□□□□□ -1.91
MCF2L2-205ENST00000461074 FAT2Q9NYQ8 4349 aa3.08□□□□□ -1.92
MCF2L2-205ENST00000461074 RYR1P21817 5038 aa3.08□□□□□ -1.92
MCF2L2-205ENST00000461074 LRP1Q07954 4544 aaKnown RBP3.05□□□□□ -1.92
MCF2L2-205ENST00000461074 SPRR2EP22531 72 aa3.05□□□□□ -1.92
MCF2L2-205ENST00000461074 SPRR2BP35325 72 aa3.05□□□□□ -1.92
MCF2L2-205ENST00000461074 SPRR2AP35326 72 aa3.05□□□□□ -1.92
MCF2L2-205ENST00000461074 KRTAP19-1Q8IUB9 90 aa3.03□□□□□ -1.92
MCF2L2-205ENST00000461074 KRTAP12-4P60329 112 aa3.03□□□□□ -1.93
MCF2L2-205ENST00000461074 DNAH8Q96JB1 4490 aa3.02□□□□□ -1.93
MCF2L2-205ENST00000461074 MYCBP2O75592 4640 aa3.02□□□□□ -1.93
MCF2L2-205ENST00000461074 MT1GP13640 62 aa3.01□□□□□ -1.93
MCF2L2-205ENST00000461074 DNAH7Q8WXX0 4024 aa3□□□□□ -1.93
MCF2L2-205ENST00000461074 SACSQ9NZJ4 4579 aa2.99□□□□□ -1.93
MCF2L2-205ENST00000461074 LCE2BO14633 110 aa2.99□□□□□ -1.93
MCF2L2-205ENST00000461074 CSMD3Q7Z407 3707 aa2.99□□□□□ -1.93
MCF2L2-205ENST00000461074 CMYA5Q8N3K9 4069 aa2.99□□□□□ -1.93
MCF2L2-205ENST00000461074 HSPG2P98160 4391 aa2.98□□□□□ -1.93
MCF2L2-205ENST00000461074 SPRR2DP22532 72 aa2.98□□□□□ -1.93
MCF2L2-205ENST00000461074 MT1XP80297 61 aa2.97□□□□□ -1.93
MCF2L2-205ENST00000461074 LRP1BQ9NZR2 4599 aa2.96□□□□□ -1.94
MCF2L2-205ENST00000461074 HERC1Q15751 4861 aa2.96□□□□□ -1.94
MCF2L2-205ENST00000461074 MT1BP07438 61 aa2.93□□□□□ -1.94
MCF2L2-205ENST00000461074 FAT1Q14517 4588 aa2.93□□□□□ -1.94
MCF2L2-205ENST00000461074 APOBP04114 4563 aaKnown RBP2.92□□□□□ -1.94
MCF2L2-205ENST00000461074 SPRR5A0A1B0GTR4 108 aa2.92□□□□□ -1.94
MCF2L2-205ENST00000461074 KRTAP9-8Q9BYQ0 159 aa2.92□□□□□ -1.94
MCF2L2-205ENST00000461074 FRAS1Q86XX4 4008 aa2.91□□□□□ -1.94
MCF2L2-205ENST00000461074 ANK2Q01484 3957 aa2.89□□□□□ -1.95
MCF2L2-205ENST00000461074 KRTAP9-3Q9BYQ3 159 aa2.89□□□□□ -1.95
MCF2L2-205ENST00000461074 FAT3Q8TDW7 4589 aa2.88□□□□□ -1.95
MCF2L2-205ENST00000461074 PRKDCP78527 4128 aaKnown RBP2.87□□□□□ -1.95
MCF2L2-205ENST00000461074 LCE3BQ5TA77 95 aa2.85□□□□□ -1.95
MCF2L2-205ENST00000461074 MT1LQ93083 61 aa2.85□□□□□ -1.95
MCF2L2-205ENST00000461074 KRTAP19-3Q7Z4W3 81 aa2.84□□□□□ -1.96
MCF2L2-205ENST00000461074 LCE3DQ9BYE3 92 aa2.84□□□□□ -1.96
MCF2L2-205ENST00000461074 VPS13BQ7Z7G8 4022 aa2.83□□□□□ -1.96
MCF2L2-205ENST00000461074 STARD9Q9P2P6 4700 aa2.83□□□□□ -1.96
MCF2L2-205ENST00000461074 PKHD1L1Q86WI1 4243 aa2.83□□□□□ -1.96
MCF2L2-205ENST00000461074 LCE3EQ5T5B0 92 aa2.82□□□□□ -1.96
MCF2L2-205ENST00000461074 LCE2CQ5TA81 110 aa2.82□□□□□ -1.96
MCF2L2-205ENST00000461074 RYR2Q92736 4967 aa2.79□□□□□ -1.96
MCF2L2-205ENST00000461074 HECTD4Q9Y4D8 3996 aa2.79□□□□□ -1.96
MCF2L2-205ENST00000461074 RYR3Q15413 4870 aa2.79□□□□□ -1.96
MCF2L2-205ENST00000461074 DNHD1Q96M86 4753 aa2.78□□□□□ -1.97
MCF2L2-205ENST00000461074 PKD1P98161 4303 aa2.78□□□□□ -1.97
MCF2L2-205ENST00000461074 KMT2AQ03164 3969 aa2.75□□□□□ -1.97
MCF2L2-205ENST00000461074 KRTAP19-6Q3LI70 58 aa2.74□□□□□ -1.97
MCF2L2-205ENST00000461074 MT1EP04732 61 aa2.74□□□□□ -1.97
MCF2L2-205ENST00000461074 MT3P25713 68 aa2.73□□□□□ -1.97
MCF2L2-205ENST00000461074 LCE2DQ5TA82 110 aaPredicted RBP2.71□□□□□ -1.98
MCF2L2-205ENST00000461074 KRTAP17-1Q9BYP8 105 aa2.68□□□□□ -1.98
MCF2L2-205ENST00000461074 BIRC6Q9NR09 4857 aa2.68□□□□□ -1.98
MCF2L2-205ENST00000461074 KRTAP4-8A0A0G2JLE6 195 aa2.68□□□□□ -1.98
MCF2L2-205ENST00000461074 KRTAP4-8Q9BYQ9 185 aa2.68□□□□□ -1.98
MCF2L2-205ENST00000461074 PCLOQ9Y6V0 5065 aa2.67□□□□□ -1.98
MCF2L2-205ENST00000461074 LYSTQ99698 3801 aa2.67□□□□□ -1.98
MCF2L2-205ENST00000461074 MT1MQ8N339 61 aa2.65□□□□□ -1.98
MCF2L2-205ENST00000461074 KRTAP19-2Q3LHN2 52 aa2.65□□□□□ -1.98
MCF2L2-205ENST00000461074 FLGP20930 4061 aaPredicted RBP2.64□□□□□ -1.99
MCF2L2-205ENST00000461074 HERC2O95714 4834 aa2.57□□□□□ -2
MCF2L2-205ENST00000461074 LCE1AQ5T7P2 110 aa2.57□□□□□ -2
MCF2L2-205ENST00000461074 KRTAP9-2Q9BYQ4 174 aa2.56□□□□□ -2
MCF2L2-205ENST00000461074 MUC17Q685J3 4493 aa2.56□□□□□ -2
MCF2L2-205ENST00000461074 MT1AP04731 61 aa2.55□□□□□ -2
MCF2L2-205ENST00000461074 LRP2P98164 4655 aa2.54□□□□□ -2
MCF2L2-205ENST00000461074 PKHD1P08F94 4074 aa2.53□□□□□ -2
MCF2L2-205ENST00000461074 LCE2AQ5TA79 106 aaPredicted RBP2.51□□□□□ -2.01
MCF2L2-205ENST00000461074 KIAA1109Q2LD37 5005 aa2.51□□□□□ -2.01
MCF2L2-205ENST00000461074 KRTAP9-6A0A140TA67 174 aa2.49□□□□□ -2.01
MCF2L2-205ENST00000461074 MT4P47944 62 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms