RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 SPINK1P00995 79 aa3.07□□□□□ -1.92
HMGB4-202ENST00000458277 PLAC4Q8WY50 150 aa3.06□□□□□ -1.92
HMGB4-202ENST00000458277 NBEAL1Q6ZS30 2694 aa3.06□□□□□ -1.92
HMGB4-202ENST00000458277 MGAM2Q2M2H8 2515 aa3.04□□□□□ -1.92
HMGB4-202ENST00000458277 DEFB4AO15263 64 aa3.04□□□□□ -1.92
HMGB4-202ENST00000458277 SPINK6Q6UWN8 80 aa3.04□□□□□ -1.92
HMGB4-202ENST00000458277 LCE1FQ5T754 118 aa3.02□□□□□ -1.93
HMGB4-202ENST00000458277 TRRAPQ9Y4A5 3859 aa3□□□□□ -1.93
HMGB4-202ENST00000458277 TYMSOSQ8TAI1 123 aa3□□□□□ -1.93
HMGB4-202ENST00000458277 PRO2289Q9P1D8 64 aa3□□□□□ -1.93
HMGB4-202ENST00000458277 NOTCH1P46531 2555 aa2.99□□□□□ -1.93
HMGB4-202ENST00000458277 LCE3AQ5TA76 89 aa2.99□□□□□ -1.93
HMGB4-202ENST00000458277 CMYA5Q8N3K9 4069 aa2.96□□□□□ -1.94
HMGB4-202ENST00000458277 COL7A1Q02388 2944 aa2.96□□□□□ -1.94
HMGB4-202ENST00000458277 UBE2DNLQ8IWF7 75 aa2.95□□□□□ -1.94
HMGB4-202ENST00000458277 INE1O15225 51 aa2.94□□□□□ -1.94
HMGB4-202ENST00000458277 DNAH3Q8TD57 4116 aa2.94□□□□□ -1.94
HMGB4-202ENST00000458277 TGP01266 2768 aa2.93□□□□□ -1.94
HMGB4-202ENST00000458277 A0A1B0GVY2 172 aa2.93□□□□□ -1.94
HMGB4-202ENST00000458277 LCE3CQ5T5A8 94 aa2.93□□□□□ -1.94
HMGB4-202ENST00000458277 PP632Q6XCG6 107 aa2.93□□□□□ -1.94
HMGB4-202ENST00000458277 APLNQ9ULZ1 77 aa2.93□□□□□ -1.94
HMGB4-202ENST00000458277 S4R3F8 94 aa2.93□□□□□ -1.94
HMGB4-202ENST00000458277 PRKDCP78527 4128 aaKnown RBP2.92□□□□□ -1.94
HMGB4-202ENST00000458277 C10orf95Q9H7T3 257 aa2.92□□□□□ -1.94
HMGB4-202ENST00000458277 Q6ZRN7 208 aaPredicted RBP2.91□□□□□ -1.94
HMGB4-202ENST00000458277 SPACA4Q8TDM5 124 aa2.91□□□□□ -1.94
HMGB4-202ENST00000458277 STAB2Q8WWQ8 2551 aa2.9□□□□□ -1.94
HMGB4-202ENST00000458277 TENM2Q9NT68 2774 aa2.9□□□□□ -1.95
HMGB4-202ENST00000458277 TENM3Q9P273 2699 aa2.88□□□□□ -1.95
HMGB4-202ENST00000458277 DNAH9Q9NYC9 4486 aa2.87□□□□□ -1.95
HMGB4-202ENST00000458277 M0QZ58 72 aa2.87□□□□□ -1.95
HMGB4-202ENST00000458277 RPS29P62273 56 aaKnown RBP2.87□□□□□ -1.95
HMGB4-202ENST00000458277 A0A0D9SG42 100 aa2.86□□□□□ -1.95
HMGB4-202ENST00000458277 NBEAL2Q6ZNJ1 2754 aa2.84□□□□□ -1.95
HMGB4-202ENST00000458277 KRTAP10-8P60410 259 aa2.84□□□□□ -1.95
HMGB4-202ENST00000458277 R4GN34 69 aa2.84□□□□□ -1.95
HMGB4-202ENST00000458277 HUWE1Q7Z6Z7 4374 aaKnown RBP2.83□□□□□ -1.96
HMGB4-202ENST00000458277 FLG2Q5D862 2391 aaPredicted RBP2.81□□□□□ -1.96
HMGB4-202ENST00000458277 KRTAP12-1P59990 96 aa2.8□□□□□ -1.96
HMGB4-202ENST00000458277 KRTAP12-2P59991 146 aa2.8□□□□□ -1.96
HMGB4-202ENST00000458277 CSMD3Q7Z407 3707 aa2.79□□□□□ -1.96
HMGB4-202ENST00000458277 DNAH7Q8WXX0 4024 aa2.77□□□□□ -1.97
HMGB4-202ENST00000458277 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
HMGB4-202ENST00000458277 KRTAP13-4Q3LI77 160 aa2.77□□□□□ -1.97
HMGB4-202ENST00000458277 KMT2CQ8NEZ4 4911 aaKnown RBP2.77□□□□□ -1.97
HMGB4-202ENST00000458277 DYNC2H1Q8NCM8 4307 aaKnown RBP2.76□□□□□ -1.97
HMGB4-202ENST00000458277 DNAH1Q9P2D7 4330 aa2.73□□□□□ -1.97
HMGB4-202ENST00000458277 STARD9Q9P2P6 4700 aa2.73□□□□□ -1.97
HMGB4-202ENST00000458277 SACSQ9NZJ4 4579 aa2.72□□□□□ -1.97
HMGB4-202ENST00000458277 RYR3Q15413 4870 aa2.72□□□□□ -1.97
HMGB4-202ENST00000458277 LYSTQ99698 3801 aa2.71□□□□□ -1.98
HMGB4-202ENST00000458277 VPS13DQ5THJ4 4388 aa2.71□□□□□ -1.98
HMGB4-202ENST00000458277 SPRR5A0A1B0GTR4 108 aa2.71□□□□□ -1.98
HMGB4-202ENST00000458277 KRTAP13-2Q52LG2 175 aa2.71□□□□□ -1.98
HMGB4-202ENST00000458277 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
HMGB4-202ENST00000458277 PLECQ15149 4684 aaKnown RBP2.7□□□□□ -1.98
HMGB4-202ENST00000458277 RYR2Q92736 4967 aa2.69□□□□□ -1.98
HMGB4-202ENST00000458277 Q5VSD8 79 aa2.68□□□□□ -1.98
HMGB4-202ENST00000458277 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
HMGB4-202ENST00000458277 HYDINQ4G0P3 5121 aa2.66□□□□□ -1.98
HMGB4-202ENST00000458277 DNAH2Q9P225 4427 aa2.65□□□□□ -1.99
HMGB4-202ENST00000458277 DNAH6Q9C0G6 4158 aa2.64□□□□□ -1.99
HMGB4-202ENST00000458277 FAT2Q9NYQ8 4349 aa2.64□□□□□ -1.99
HMGB4-202ENST00000458277 KMT2AQ03164 3969 aa2.63□□□□□ -1.99
HMGB4-202ENST00000458277 PKD1P98161 4303 aa2.63□□□□□ -1.99
HMGB4-202ENST00000458277 DNAH10Q8IVF4 4471 aa2.63□□□□□ -1.99
HMGB4-202ENST00000458277 FRAS1Q86XX4 4008 aa2.63□□□□□ -1.99
HMGB4-202ENST00000458277 HECTD4Q9Y4D8 3996 aa2.62□□□□□ -1.99
HMGB4-202ENST00000458277 KRTAP10-1P60331 282 aa2.62□□□□□ -1.99
HMGB4-202ENST00000458277 DNAH17Q9UFH2 4485 aa2.62□□□□□ -1.99
HMGB4-202ENST00000458277 EPPK1P58107 5090 aaKnown RBP2.62□□□□□ -1.99
HMGB4-202ENST00000458277 KRTAP1-4P0C5Y4 121 aa2.61□□□□□ -1.99
HMGB4-202ENST00000458277 LCE1CQ5T751 118 aa2.61□□□□□ -1.99
HMGB4-202ENST00000458277 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
HMGB4-202ENST00000458277 PKHD1P08F94 4074 aa2.58□□□□□ -2
HMGB4-202ENST00000458277 DNAH11Q96DT5 4516 aa2.58□□□□□ -2
HMGB4-202ENST00000458277 C9orf92A6NGG3 77 aa2.58□□□□□ -2
HMGB4-202ENST00000458277 TNP1P09430 55 aa2.55□□□□□ -2
HMGB4-202ENST00000458277 DYNC1H1Q14204 4646 aaKnown RBP2.55□□□□□ -2
HMGB4-202ENST00000458277 BIRC6Q9NR09 4857 aa2.54□□□□□ -2
HMGB4-202ENST00000458277 KIAA1109Q2LD37 5005 aa2.53□□□□□ -2
HMGB4-202ENST00000458277 HERC2O95714 4834 aa2.52□□□□□ -2.01
HMGB4-202ENST00000458277 HSPG2P98160 4391 aa2.51□□□□□ -2.01
HMGB4-202ENST00000458277 SRRM2Q9UQ35 2752 aaKnown RBP2.51□□□□□ -2.01
HMGB4-202ENST00000458277 LRP1BQ9NZR2 4599 aa2.51□□□□□ -2.01
HMGB4-202ENST00000458277 APOBP04114 4563 aaKnown RBP2.51□□□□□ -2.01
HMGB4-202ENST00000458277 DNAH5Q8TE73 4624 aa2.5□□□□□ -2.01
HMGB4-202ENST00000458277 KRTAP10-4P60372 401 aaPredicted RBP2.49□□□□□ -2.01
HMGB4-202ENST00000458277 RYR1P21817 5038 aa2.47□□□□□ -2.01
HMGB4-202ENST00000458277 PCLOQ9Y6V0 5065 aa2.47□□□□□ -2.01
HMGB4-202ENST00000458277 DNAH8Q96JB1 4490 aa2.46□□□□□ -2.02
HMGB4-202ENST00000458277 FAT1Q14517 4588 aa2.45□□□□□ -2.02
HMGB4-202ENST00000458277 SMR3BP02814 79 aaPredicted RBP2.45□□□□□ -2.02
HMGB4-202ENST00000458277 ABCA13Q86UQ4 5058 aa2.43□□□□□ -2.02
HMGB4-202ENST00000458277 DMBT1Q9UGM3 2413 aaPredicted RBP2.42□□□□□ -2.02
HMGB4-202ENST00000458277 VPS13BQ7Z7G8 4022 aa2.42□□□□□ -2.02
HMGB4-202ENST00000458277 MYCBP2O75592 4640 aa2.4□□□□□ -2.03
HMGB4-202ENST00000458277 PKHD1L1Q86WI1 4243 aa2.36□□□□□ -2.03
HMGB4-202ENST00000458277 MT1HL1P0DM35 61 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms