RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 SPINK6Q6UWN8 80 aa3.4□□□□□ -1.87
MCF2-206ENST00000446225 LINC00308Q8TCZ7 52 aa3.39□□□□□ -1.87
MCF2-206ENST00000446225 PRR15LQ9BU68 103 aa3.39□□□□□ -1.87
MCF2-206ENST00000446225 TRBV7-4A0A0J9YYF1 115 aa3.38□□□□□ -1.87
MCF2-206ENST00000446225 IGLV6-57P01721 117 aa3.37□□□□□ -1.87
MCF2-206ENST00000446225 SNURFQ9Y675 71 aa3.37□□□□□ -1.87
MCF2-206ENST00000446225 KRTAP13-1Q8IUC0 172 aa3.36□□□□□ -1.87
MCF2-206ENST00000446225 KCNQ1DNQ9H478 68 aa3.36□□□□□ -1.87
MCF2-206ENST00000446225 HERC1Q15751 4861 aa3.36□□□□□ -1.87
MCF2-206ENST00000446225 MT1HL1P0DM35 61 aa3.36□□□□□ -1.87
MCF2-206ENST00000446225 PRLHP81277 87 aa3.36□□□□□ -1.87
MCF2-206ENST00000446225 DMBT1Q9UGM3 2413 aaPredicted RBP3.36□□□□□ -1.87
MCF2-206ENST00000446225 SPRR1AP35321 89 aa3.34□□□□□ -1.87
MCF2-206ENST00000446225 KRTAP10-8P60410 259 aa3.34□□□□□ -1.87
MCF2-206ENST00000446225 TNXBP22105 4242 aa3.34□□□□□ -1.87
MCF2-206ENST00000446225 PDE6GP18545 87 aa3.34□□□□□ -1.88
MCF2-206ENST00000446225 ETDCA0A1B0GVM5 59 aa3.33□□□□□ -1.88
MCF2-206ENST00000446225 LINC01558Q9Y6Z2 57 aa3.33□□□□□ -1.88
MCF2-206ENST00000446225 LCE3CQ5T5A8 94 aa3.32□□□□□ -1.88
MCF2-206ENST00000446225 A0A087WVE0 104 aa3.31□□□□□ -1.88
MCF2-206ENST00000446225 IGKV3D-7A0A0C4DH55 119 aa3.31□□□□□ -1.88
MCF2-206ENST00000446225 A0A0G2JQZ4 141 aa3.31□□□□□ -1.88
MCF2-206ENST00000446225 DNAL4O96015 105 aa3.31□□□□□ -1.88
MCF2-206ENST00000446225 KRTAP10-12P60413 245 aa3.31□□□□□ -1.88
MCF2-206ENST00000446225 Q6ZRX8 168 aa3.31□□□□□ -1.88
MCF2-206ENST00000446225 SPRR4Q96PI1 79 aa3.3□□□□□ -1.88
MCF2-206ENST00000446225 COX7BP24311 80 aa3.29□□□□□ -1.88
MCF2-206ENST00000446225 IGFL1Q6UW32 110 aa3.29□□□□□ -1.88
MCF2-206ENST00000446225 SMIM11BQ8TCY0 68 aa3.29□□□□□ -1.88
MCF2-206ENST00000446225 JMJD7-PLA2G4BH0Y9G9 81 aa3.29□□□□□ -1.88
MCF2-206ENST00000446225 LINC00846Q9NV44 126 aa3.28□□□□□ -1.88
MCF2-206ENST00000446225 UQCR11O14957 56 aa3.27□□□□□ -1.89
MCF2-206ENST00000446225 HMCN2Q8NDA2 5059 aa3.27□□□□□ -1.89
MCF2-206ENST00000446225 TPRXLQ17RH7 258 aa3.26□□□□□ -1.89
MCF2-206ENST00000446225 DEFB105AQ8NG35 78 aa3.26□□□□□ -1.89
MCF2-206ENST00000446225 NDUFB1O75438 58 aa3.25□□□□□ -1.89
MCF2-206ENST00000446225 LINC00575Q6W349 94 aa3.25□□□□□ -1.89
MCF2-206ENST00000446225 SPRR1BP22528 89 aa3.24□□□□□ -1.89
MCF2-206ENST00000446225 LINC00304Q8N9R0 145 aa3.23□□□□□ -1.89
MCF2-206ENST00000446225 NREPQ16612 68 aa3.23□□□□□ -1.89
MCF2-206ENST00000446225 IGLV5-48A0A075B6I7 105 aa3.22□□□□□ -1.89
MCF2-206ENST00000446225 SSBP3-AS1Q7Z2R9 100 aa3.22□□□□□ -1.89
MCF2-206ENST00000446225 H0YGX0 51 aa3.21□□□□□ -1.9
MCF2-206ENST00000446225 Q6ZQY7 126 aa3.21□□□□□ -1.9
MCF2-206ENST00000446225 H0Y9P7 68 aa3.21□□□□□ -1.9
MCF2-206ENST00000446225 LINC00208Q96KT6 92 aa3.21□□□□□ -1.9
MCF2-206ENST00000446225 SPATA8Q6RVD6 105 aa3.2□□□□□ -1.9
MCF2-206ENST00000446225 SPINK7P58062 85 aa3.19□□□□□ -1.9
MCF2-206ENST00000446225 SPINK1P00995 79 aa3.18□□□□□ -1.9
MCF2-206ENST00000446225 LRP2P98164 4655 aa3.17□□□□□ -1.9
MCF2-206ENST00000446225 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.17□□□□□ -1.9
MCF2-206ENST00000446225 LPAP08519 4548 aa3.17□□□□□ -1.9
MCF2-206ENST00000446225 UBR4Q5T4S7 5183 aa3.17□□□□□ -1.9
MCF2-206ENST00000446225 OBSCN-AS1Q96MR7 158 aa3.16□□□□□ -1.9
MCF2-206ENST00000446225 ZCCHC13Q8WW36 166 aaKnown RBP3.15□□□□□ -1.9
MCF2-206ENST00000446225 RPS29P62273 56 aaKnown RBP3.15□□□□□ -1.91
MCF2-206ENST00000446225 UBL5Q9BZL1 73 aa3.15□□□□□ -1.91
MCF2-206ENST00000446225 Q96NJ1 140 aa3.14□□□□□ -1.91
MCF2-206ENST00000446225 LOC110117498A0A087WWA1 95 aa3.13□□□□□ -1.91
MCF2-206ENST00000446225 LINC00472Q9H8W2 130 aa3.13□□□□□ -1.91
MCF2-206ENST00000446225 IGKV4-1P06312 121 aa3.11□□□□□ -1.91
MCF2-206ENST00000446225 RNF213Q63HN8 5207 aa3.11□□□□□ -1.91
MCF2-206ENST00000446225 INE1O15225 51 aa3.11□□□□□ -1.91
MCF2-206ENST00000446225 KRTAP13-3Q3SY46 172 aa3.1□□□□□ -1.91
MCF2-206ENST00000446225 KRTAP10-6P60371 365 aaPredicted RBP3.09□□□□□ -1.91
MCF2-206ENST00000446225 C9orf92A6NGG3 77 aa3.07□□□□□ -1.92
MCF2-206ENST00000446225 MUC17Q685J3 4493 aa3.06□□□□□ -1.92
MCF2-206ENST00000446225 COA5Q86WW8 74 aa3.06□□□□□ -1.92
MCF2-206ENST00000446225 ACYP2P14621 99 aa3.05□□□□□ -1.92
MCF2-206ENST00000446225 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
MCF2-206ENST00000446225 SPRR5A0A1B0GTR4 108 aa3.04□□□□□ -1.92
MCF2-206ENST00000446225 MUC2Q02817 5179 aa3.03□□□□□ -1.92
MCF2-206ENST00000446225 A0A1B0GU69 56 aa3.02□□□□□ -1.93
MCF2-206ENST00000446225 KRTAP4-1Q9BYQ7 146 aa3.01□□□□□ -1.93
MCF2-206ENST00000446225 PCOTHQ58A44 107 aa3□□□□□ -1.93
MCF2-206ENST00000446225 RPL37P61927 97 aaKnown RBP2.99□□□□□ -1.93
MCF2-206ENST00000446225 KRTAP12-2P59991 146 aa2.98□□□□□ -1.93
MCF2-206ENST00000446225 FAT4Q6V0I7 4981 aa2.96□□□□□ -1.94
MCF2-206ENST00000446225 PLAC4Q8WY50 150 aa2.92□□□□□ -1.94
MCF2-206ENST00000446225 K7EQZ3 153 aa2.91□□□□□ -1.94
MCF2-206ENST00000446225 KRTAP10-5P60370 271 aa2.91□□□□□ -1.94
MCF2-206ENST00000446225 MMP24-AS1A0A0U1RRL7 71 aa2.9□□□□□ -1.95
MCF2-206ENST00000446225 KRTAP19-2Q3LHN2 52 aa2.9□□□□□ -1.95
MCF2-206ENST00000446225 PP632Q6XCG6 107 aa2.87□□□□□ -1.95
MCF2-206ENST00000446225 MRPL34Q9BQ48 92 aaKnown RBP2.87□□□□□ -1.95
MCF2-206ENST00000446225 WFDC13Q8IUB5 93 aa2.87□□□□□ -1.95
MCF2-206ENST00000446225 COX6B2Q6YFQ2 88 aa2.85□□□□□ -1.95
MCF2-206ENST00000446225 MT1HP80294 61 aa2.84□□□□□ -1.95
MCF2-206ENST00000446225 KRTAP13-4Q3LI77 160 aa2.83□□□□□ -1.96
MCF2-206ENST00000446225 FLGP20930 4061 aaPredicted RBP2.83□□□□□ -1.96
MCF2-206ENST00000446225 KRTAP5-9P26371 169 aa2.82□□□□□ -1.96
MCF2-206ENST00000446225 M0R2T5 61 aa2.8□□□□□ -1.96
MCF2-206ENST00000446225 TP53AIP1Q9HCN2 124 aa2.78□□□□□ -1.97
MCF2-206ENST00000446225 LCE1EQ5T753 118 aa2.77□□□□□ -1.97
MCF2-206ENST00000446225 KRTAP10-7P60409 375 aaPredicted RBP2.74□□□□□ -1.97
MCF2-206ENST00000446225 KRTAP10-10P60014 251 aa2.72□□□□□ -1.97
MCF2-206ENST00000446225 H1FX-AS1Q4G0G2 97 aa2.72□□□□□ -1.97
MCF2-206ENST00000446225 KRTAP5-11Q6L8G4 156 aa2.72□□□□□ -1.97
MCF2-206ENST00000446225 LCE3DQ9BYE3 92 aa2.72□□□□□ -1.97
MCF2-206ENST00000446225 CRIPTQ9P021 101 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms